BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0053.0032.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771561.1| transcriptional regulator [Bradyrhizobium japon...   220   7e-56
ref|YP_487218.1| MarR family transcriptional regulator [Rhodopse...    74   8e-12
ref|ZP_05915635.1| transcriptional regulator, MarR family protei...    74   9e-12
ref|NP_947215.1| MarR family transcriptional regulator [Rhodopse...    74   1e-11
ref|NP_767687.1| transcriptional regulator [Bradyrhizobium japon...    73   1e-11

>ref|NP_771561.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50186.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 169

 Score =  220 bits (560), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 133/157 (84%), Gaps = 2/157 (1%)

Query: 3   PEAVVDSELAPITAMMSSRLMVLANLLRRGAMLRYKRLTGLSSVEFGLVASLGRRP-MSV 61
           PEA  +SE APIT M+SSRLMVLANLL+RGA+LRYKRL GLSSVEFGLVASLGRRP MSV
Sbjct: 12  PEAG-ESEAAPITVMLSSRLMVLANLLKRGAILRYKRLAGLSSVEFGLVASLGRRPPMSV 70

Query: 62  VRLAEAVGMDKGQISRALAELVARKLVTKAANPRDNRETLVSLTKAGLAAHDAIVAGAQE 121
            RLAEAVG DKGQISRALAELV+RKL+ K+ANP+D+RE LVSLT AGLAAHD IV GAQ+
Sbjct: 71  ARLAEAVGQDKGQISRALAELVSRKLIAKSANPKDSREVLVSLTAAGLAAHDVIVEGAQD 130

Query: 122 RNRRLLEQLAPGDLELLLGHIDRLTLTAAEMLAAERG 158
           RNRRLLE L+  + + LL  +D+LT  AAEML AE+ 
Sbjct: 131 RNRRLLESLSEAEFDTLLRQVDQLTAIAAEMLEAEKN 167


>ref|YP_487218.1| MarR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gb|ABD08307.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris
           HaA2]
          Length = 171

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 22  LMVLANLLRRGAMLRYKRLTGLSSVEFGLVASLGRRP-MSVVRLAEAVGMDKGQISRALA 80
           +  +AN L   A   Y+   G++  E+ +++ L   P +S  R+ E +G +KG +SR LA
Sbjct: 35  ITFIANKLSNSATAFYQGHFGVNVTEWRMMSLLAIEPGISAARICEVIGFNKGPVSRTLA 94

Query: 81  ELVARKLVTKAANPRDNRETLVSLTKAGLAAHDAIVAGAQERNRRLLEQLAPGDLELLLG 140
           ++  R L+    +P D R   +SLT  G A HD ++  A ER RRL+  L   + E+L+ 
Sbjct: 95  DMQQRGLIAIRTDPDDGRTHSISLTAKGRATHDKVIVAALERERRLMSCLNKSEQEVLID 154

Query: 141 HIDRL 145
            + RL
Sbjct: 155 LLRRL 159


>ref|ZP_05915635.1| transcriptional regulator, MarR family protein [Brevibacterium
           linens BL2]
          Length = 164

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 9   SELAPITAMMSSRLMVLANLLRRGAMLRYKRLTGLSSVEFGLVASLGR-RPMSVVRLAEA 67
           +E   IT ++S R+  LANLL   A  R++R   +S  E+  +A LG+ +PM+V +LA  
Sbjct: 14  AETLQITELLSFRVRRLANLLSASAGPRFRREFEVSLPEWRTLALLGQTQPMTVNKLARL 73

Query: 68  VGMDKGQISRALAELVARKLVTKAANPRDNRETLVSLTKAGLAAHDAIVAGAQERNRRLL 127
             +DK Q+SR L+ LV R LV K+  PR  R + ++LT  G A  + I+A A ER+R +L
Sbjct: 74  AALDKAQMSRVLSGLVERDLVAKSLGPR--RSSQLTLTDTGQALFERIIAAANERDRTVL 131

Query: 128 EQLAPGDLELLLGHIDRL 145
             L   + E+L   +++L
Sbjct: 132 AALDDEEKEVLDRALNKL 149


>ref|NP_947215.1| MarR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 emb|CAE27311.1| possible transcriptional regulator, MarR/EmrR family
           [Rhodopseudomonas palustris CGA009]
          Length = 171

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 22  LMVLANLLRRGAMLRYKRLTGLSSVEFGLVASLGRRP-MSVVRLAEAVGMDKGQISRALA 80
           +  +AN L   A   Y+   G++  E+ +++ L   P +S  R+ + +G +KG +SR L+
Sbjct: 35  ITFIANKLSNSATAFYQGNFGVNVTEWRIMSLLAIEPGISAARICQVIGFNKGPVSRTLS 94

Query: 81  ELVARKLVTKAANPRDNRETLVSLTKAGLAAHDAIVAGAQERNRRLLEQLAPGDLELLLG 140
           ++ +R L+T   +P D R   +SLT  G A HD ++  A ER R+L+  L+  + E+L+ 
Sbjct: 95  DMQSRGLITIRVDPNDARTHSISLTGKGRATHDKVIVAALERERKLMSCLSADEQEVLID 154

Query: 141 HIDRL 145
            + RL
Sbjct: 155 LLRRL 159


>ref|NP_767687.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46312.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 168

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 22  LMVLANLLRRGAMLRYKRLTGLSSVEFGLVASLGRRP-MSVVRLAEAVGMDKGQISRALA 80
           +  +AN L   A   Y+R  G++  E+ +++ L   P +   R+   +G DKG +SR LA
Sbjct: 31  ITFIANKLSNSATAFYQREFGVNVTEWRIMSLLAIEPGIPASRICHVIGFDKGPVSRTLA 90

Query: 81  ELVARKLVTKAANPRDNRETLVSLTKAGLAAHDAIVAGAQERNRRLLEQLAPGDLELLLG 140
            L  R LV+   +P D R   ++LT  G A HD ++  A ER RRLL  L+  + ++L+ 
Sbjct: 91  GLEKRGLVSIRTDPNDGRTHSIALTARGRATHDKVIVAAFERERRLLSCLSKDERDVLID 150

Query: 141 HIDRL 145
            + RL
Sbjct: 151 LLRRL 155