BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0028.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001755676.1| TRAP dicarboxylate transporter subunit DctP ... 368 e-99 ref|YP_002947525.1| TRAP dicarboxylate transporter, DctP subunit... 365 8e-99 ref|YP_002498323.1| TRAP dicarboxylate transporter subunit DctP ... 362 4e-98 ref|XP_002945008.1| PREDICTED: uncharacterized protein y4mM-like... 358 8e-97 ref|YP_001240066.1| putative TRAP-type C4-dicarboxylate transpor... 356 3e-96 >ref|YP_001755676.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium radiotolerans JCM 2831] gb|ACB24993.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium radiotolerans JCM 2831] Length = 344 Score = 368 bits (944), Expect = e-99, Method: Compositional matrix adjust. Identities = 175/338 (51%), Positives = 232/338 (68%), Gaps = 4/338 (1%) Query: 6 MTRRRVLGTGSAAVAATMFGKPALA---AVEFDLKLGVNTPETHPLTMRLTEAAKAVGAQ 62 ++RRR L TGS A+ A P +A EF K N P+THP+ +R E A+A+ + Sbjct: 8 LSRRRFLVTGSTALVAGTLAAPHVARAQKAEFTYKYANNLPDTHPMNIRAREMAEALRTE 67 Query: 63 SSGRVNITVFSNSQLGGDPEMLSQVRAGGIELLAAPSMTLSTLVPLSGLPSIGFAFQSYD 122 + GR ++ +F SQLG D + LSQ+R+G +E + LSTLVP + + IG+AF SYD Sbjct: 68 TGGRFDLKIFPTSQLGSDTDTLSQLRSGSVEFFTMSPLILSTLVPNASINGIGYAFPSYD 127 Query: 123 QVWAAMDGGVGDLVREAITKTGVVPLKKVWDNGFRQITSSSSRQLNSVDDLKGFKIRVPV 182 VW AMDG +G VR+ I K G+V ++K+WDNG+RQ T+SS+R + + DD KGF+IRVPV Sbjct: 128 AVWPAMDGELGAWVRQQIAKAGLVAMEKIWDNGYRQ-TTSSTRPIATPDDFKGFRIRVPV 186 Query: 183 TALLTSLFSGLGALPSSISYSELYSALQTHIVEGQENPLAQVSTGKLYEVQKFCALSNHC 242 + L TS+F A P+SI+ +E YSALQT IVEGQENPLA +ST K YEVQK+C+L+NH Sbjct: 187 SPLWTSMFKAFDAAPASINLNETYSALQTKIVEGQENPLAVISTTKFYEVQKYCSLTNHM 246 Query: 243 WSGYWILGNRRAMAGLPPDLLELINAAFDAAAVKERADLVEMDRSLQAELTEKGMTFNKP 302 W GYW L NRRA LPPDL E + +AA +KERAD+ +++ +LQAEL++ GM FNKP Sbjct: 247 WDGYWFLANRRAWERLPPDLRETVARHINAAGMKERADVAQLNANLQAELSKNGMVFNKP 306 Query: 303 DPVQFRAALVKAGFYTQWQKTYGADAWAALEKYTGKLT 340 DP FR L KAGFY +W+ YG + W+ LEK GKLT Sbjct: 307 DPEPFRDKLRKAGFYAEWKGRYGEEGWSLLEKACGKLT 344 >ref|YP_002947525.1| TRAP dicarboxylate transporter, DctP subunit [Variovorax paradoxus S110] gb|ACS22259.1| TRAP dicarboxylate transporter, DctP subunit [Variovorax paradoxus S110] Length = 337 Score = 365 bits (936), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 175/337 (51%), Positives = 231/337 (68%), Gaps = 2/337 (0%) Query: 4 MRMTRRRVL-GTGSAAVAATMFGKPALAAVEFDLKLGVNTPETHPLTMRLTEAAKAVGAQ 62 M +TRR VL T AA A + EF+ K N P THPL +R E A A+ A+ Sbjct: 1 MSITRRTVLRSTALAASLAVPMHRAFAQKAEFNYKYANNLPVTHPLNIRAKEMADAIRAE 60 Query: 63 SSGRVNITVFSNSQLGGDPEMLSQVRAGGIELLAAPSMTLSTLVPLSGLPSIGFAFQSYD 122 + GRV+I +F ++QLG D ++LSQ+R+GG+E + LSTLVP + + +GFAF Y Sbjct: 61 TGGRVDIQIFPSNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFNDYA 120 Query: 123 QVWAAMDGGVGDLVREAITKTGVVPLKKVWDNGFRQITSSSSRQLNSVDDLKGFKIRVPV 182 VW AMDG +G +R+ I K +VP++K+WDNGFRQITSSS R + + D+KGFKIRVPV Sbjct: 121 SVWKAMDGELGAHIRQQIAKANIVPMEKIWDNGFRQITSSS-RAIAAPQDMKGFKIRVPV 179 Query: 183 TALLTSLFSGLGALPSSISYSELYSALQTHIVEGQENPLAQVSTGKLYEVQKFCALSNHC 242 + L TS+F L A P+SI+++E+YSALQT IV+GQENPLA ++T KLYEVQK+C+LSNH Sbjct: 180 SPLWTSMFKALDAAPTSINFAEVYSALQTKIVDGQENPLAIIATAKLYEVQKYCSLSNHM 239 Query: 243 WSGYWILGNRRAMAGLPPDLLELINAAFDAAAVKERADLVEMDRSLQAELTEKGMTFNKP 302 W G+W L NRRA LP DL ++ +AA +KERAD+ E++ LQ EL KGM FN+P Sbjct: 240 WDGFWFLANRRAWDKLPADLRTVVARHINAAGMKERADVAELNAGLQKELAAKGMAFNQP 299 Query: 303 DPVQFRAALVKAGFYTQWQKTYGADAWAALEKYTGKL 339 D FR L KAGFY++W+ YG +AWA LE+ GKL Sbjct: 300 DAAAFRDQLRKAGFYSEWKAKYGDEAWALLERSAGKL 336 >ref|YP_002498323.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL58020.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 339 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 169/339 (49%), Positives = 233/339 (68%), Gaps = 4/339 (1%) Query: 4 MRMTRRRVLGTGSAAVAATMFGKPALA---AVEFDLKLGVNTPETHPLTMRLTEAAKAVG 60 M ++RRR+L GS+AV ++ G P + A EF K N P+THP+ +R E A A+ Sbjct: 1 MHLSRRRLLAFGSSAVVGSLIGAPRIVRAQAAEFTYKYANNLPDTHPMNVRAREMAAAIK 60 Query: 61 AQSSGRVNITVFSNSQLGGDPEMLSQVRAGGIELLAAPSMTLSTLVPLSGLPSIGFAFQS 120 A+++GR ++ +F +SQLG D + LSQ+RAGG+E + LS LVP + + +GFAF Sbjct: 61 AETNGRFDLQIFPSSQLGSDTDTLSQLRAGGVEFFTLSPLILSILVPAASISGMGFAFPD 120 Query: 121 YDQVWAAMDGGVGDLVREAITKTGVVPLKKVWDNGFRQITSSSSRQLNSVDDLKGFKIRV 180 YD VW AMDG +G VR+ I K+G+ ++K+WDNGFRQ T+SSSRQ+N+ DDL+GFKIRV Sbjct: 121 YDAVWKAMDGDLGAHVRQQIAKSGLFAMEKIWDNGFRQ-TTSSSRQINTPDDLRGFKIRV 179 Query: 181 PVTALLTSLFSGLGALPSSISYSELYSALQTHIVEGQENPLAQVSTGKLYEVQKFCALSN 240 P + L TS++ A P+SI+++E+YS+LQT IV+GQENPLA ++T KL EVQK+C+L+N Sbjct: 180 PPSPLWTSMYKAFEAAPTSINFNEVYSSLQTKIVDGQENPLAIIATAKLNEVQKYCSLTN 239 Query: 241 HCWSGYWILGNRRAMAGLPPDLLELINAAFDAAAVKERADLVEMDRSLQAELTEKGMTFN 300 H W G+W L NRRA LP D+ ++ + A KER D+ +++ LQ ELT KG+ FN Sbjct: 240 HMWDGFWFLANRRAWERLPKDVQTVVAKHINEAGQKEREDVAQLNAKLQQELTAKGLVFN 299 Query: 301 KPDPVQFRAALVKAGFYTQWQKTYGADAWAALEKYTGKL 339 PD FR L KAGFY +W+ YG +AW LEK TGKL Sbjct: 300 SPDQAPFRDKLRKAGFYAEWKGRYGQEAWTILEKTTGKL 338 >ref|XP_002945008.1| PREDICTED: uncharacterized protein y4mM-like [Xenopus (Silurana) tropicalis] Length = 336 Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 171/336 (50%), Positives = 227/336 (67%), Gaps = 1/336 (0%) Query: 4 MRMTRRRVLGTGSAAVAATMFGKPALAAVEFDLKLGVNTPETHPLTMRLTEAAKAVGAQS 63 M TRR VL T +AA A + EF LK N P THP+ +R E A A+ A++ Sbjct: 1 MNFTRRNVLTTVAAAPLALHLPCVRAQSAEFTLKYANNLPVTHPMNVRAKEMASAIAAET 60 Query: 64 SGRVNITVFSNSQLGGDPEMLSQVRAGGIELLAAPSMTLSTLVPLSGLPSIGFAFQSYDQ 123 GRV++ +F N+QLG D +MLSQVR+GGIE + LSTLVP + + +GFAF++YD Sbjct: 61 KGRVDLQLFPNNQLGSDTDMLSQVRSGGIEFFTLSGLILSTLVPAAAITGVGFAFENYDA 120 Query: 124 VWAAMDGGVGDLVREAITKTGVVPLKKVWDNGFRQITSSSSRQLNSVDDLKGFKIRVPVT 183 VW A+DG +G VR I K +V + +WDNGFRQITSS + + S DDLKGFKIRVPV+ Sbjct: 121 VWKALDGDLGAYVRAQIAKANLVVMDSIWDNGFRQITSSI-KPIQSADDLKGFKIRVPVS 179 Query: 184 ALLTSLFSGLGALPSSISYSELYSALQTHIVEGQENPLAQVSTGKLYEVQKFCALSNHCW 243 L TS+F GA P+SI++SE+YSALQT IV+GQENPLA +ST KL EVQ+FC+L+NH W Sbjct: 180 PLWTSMFKAFGAAPASINFSEVYSALQTKIVDGQENPLAIISTAKLNEVQRFCSLTNHMW 239 Query: 244 SGYWILGNRRAMAGLPPDLLELINAAFDAAAVKERADLVEMDRSLQAELTEKGMTFNKPD 303 G+W L N+RA LP D+ ++ + A +KER D+ ++ S Q L+EKGM FN+P Sbjct: 240 DGFWFLANKRAWERLPADVRVIVAKHINDAGIKERTDVAALNASTQKALSEKGMAFNQPK 299 Query: 304 PVQFRAALVKAGFYTQWQKTYGADAWAALEKYTGKL 339 FRA L +AGFY++W+ +G +AW LE+ TGKL Sbjct: 300 SDSFRAKLREAGFYSEWKAKFGDEAWTILERSTGKL 335 >ref|YP_001240066.1| putative TRAP-type C4-dicarboxylate transport system periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ36160.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Bradyrhizobium sp. BTAi1] Length = 331 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 163/310 (52%), Positives = 220/310 (70%), Gaps = 1/310 (0%) Query: 31 AVEFDLKLGVNTPETHPLTMRLTEAAKAVGAQSSGRVNITVFSNSQLGGDPEMLSQVRAG 90 + EF K N P+THPL +R E A A+ A+++G+ ++ +F N+QLG D +MLSQ+R+G Sbjct: 23 SAEFTYKYANNLPDTHPLNVRAKEMAAAIKAETNGKFDLQIFPNNQLGSDTDMLSQIRSG 82 Query: 91 GIELLAAPSMTLSTLVPLSGLPSIGFAFQSYDQVWAAMDGGVGDLVREAITKTGVVPLKK 150 G+E + L+TLVP + + IGFAF YD VW AMDG +G VR I K G++ + K Sbjct: 83 GVEFFTLSGLILATLVPAASINGIGFAFPDYDTVWKAMDGDLGAYVRGQINKAGLMVMDK 142 Query: 151 VWDNGFRQITSSSSRQLNSVDDLKGFKIRVPVTALLTSLFSGLGALPSSISYSELYSALQ 210 +WDNGFRQ T+SS++ +N DDLKGFKIRVPV+ L TS+F A P+SI++SE+YSALQ Sbjct: 143 IWDNGFRQ-TTSSTKPINGPDDLKGFKIRVPVSPLWTSMFKAFEAAPASINFSEVYSALQ 201 Query: 211 THIVEGQENPLAQVSTGKLYEVQKFCALSNHCWSGYWILGNRRAMAGLPPDLLELINAAF 270 T +VEGQENPLA +ST KLYEVQK+C+L+NH W G+W L NRRA +P D+ ++ Sbjct: 202 TKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGFWFLANRRAWEAVPADMRAIVAKHI 261 Query: 271 DAAAVKERADLVEMDRSLQAELTEKGMTFNKPDPVQFRAALVKAGFYTQWQKTYGADAWA 330 +AAAVKER D+ +++ LQAEL KG+TFN+P+ FR L AGFY +W+ YG +AWA Sbjct: 262 NAAAVKEREDVAKLNAGLQAELASKGLTFNQPNVAPFRDKLRSAGFYAEWKGKYGDEAWA 321 Query: 331 ALEKYTGKLT 340 LEK GKL+ Sbjct: 322 LLEKAVGKLS 331