BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0010.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX... 856 0.0 ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit C... 854 0.0 ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX... 854 0.0 ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX... 853 0.0 ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subu... 852 0.0 >ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] sp|Q07NN5.1|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX sp|Q215J1.1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] Length = 424 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/424 (98%), Positives = 420/424 (99%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 MSKVGTSD+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR Sbjct: 1 MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT Sbjct: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQ+ADYNVERAQRGIV Sbjct: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE Sbjct: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 FVGRLPVVATLEDLDE SLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI Sbjct: 301 FVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDR ES Sbjct: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRTAES 420 Query: 421 SASA 424 SASA Sbjct: 421 SASA 424 >ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] sp|A5EKA7.1|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] Length = 424 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/424 (98%), Positives = 422/424 (99%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 MSKVGTSD+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR Sbjct: 1 MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DGIPTPKEICKVLDDYVIGQ+HAKKVLSVAVHNHYKRLNHQTKH+DVELAKSNILLIGPT Sbjct: 61 DGIPTPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV Sbjct: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE Sbjct: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 FVGRLPVVATLEDLDE SLKKILT+PKNALVKQYQRLFEMENIELTFADEALGAVARKAI Sbjct: 301 FVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES Sbjct: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 Query: 421 SASA 424 SASA Sbjct: 421 SASA 424 >ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] sp|Q2IWZ3.1|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] Length = 424 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/424 (98%), Positives = 421/424 (99%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 MSKVGTSD+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR Sbjct: 1 MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DGIPTPKEICKVLDDYVIGQ+HAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT Sbjct: 61 DGIPTPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV Sbjct: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAF+GLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE Sbjct: 241 NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 FVGRLPVVATLEDLDE SLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI Sbjct: 301 FVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVV+GTARPLYIYADRSDRA ES Sbjct: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVDGTARPLYIYADRSDRAAES 420 Query: 421 SASA 424 SASA Sbjct: 421 SASA 424 >ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] sp|Q135W8.1|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] Length = 424 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/424 (98%), Positives = 420/424 (99%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 MSKVGTSD+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR Sbjct: 1 MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DGIPTPKEICKVLDDYVIGQ HAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT Sbjct: 61 DGIPTPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV Sbjct: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAF+GLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE Sbjct: 241 NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 FVGRLPVVATLEDLDE SLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI Sbjct: 301 FVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVV+GTARPLYIYADRSDRA ES Sbjct: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVDGTARPLYIYADRSDRAAES 420 Query: 421 SASA 424 SASA Sbjct: 421 SASA 424 >ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] Length = 424 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/424 (98%), Positives = 420/424 (99%) Query: 1 MSKVGTSDAKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 MSKVGTSD+KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR Sbjct: 1 MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSR 60 Query: 61 DGIPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 DGIPTPKEICKVLDDYVIGQ HAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT Sbjct: 61 DGIPTPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPT 120 Query: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV Sbjct: 121 GSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 180 Query: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPHGGRKHPQQEFLQVDTT 240 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPP GGRKHPQQEFLQVDTT Sbjct: 181 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT 240 Query: 241 NILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 NILFICGGAF+GLEKIIS RGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE Sbjct: 241 NILFICGGAFAGLEKIISGRGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPE 300 Query: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI Sbjct: 301 FVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVARKAI 360 Query: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRSDRAVES 420 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADR+DRA E+ Sbjct: 361 ERKTGARGLRSILESILLETMFDLPGLEGVEEVVISREVVEGTARPLYIYADRTDRAAET 420 Query: 421 SASA 424 SASA Sbjct: 421 SASA 424