BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0006.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771586.1| hypothetical protein blr4946 [Bradyrhizobium ja... 246 4e-63 ref|ZP_08629604.1| multicopper oxidase [Bradyrhizobiaceae bacter... 223 4e-56 ref|YP_532261.1| twin-arginine translocation pathway signal [Rho... 214 1e-53 ref|YP_001206178.1| putative multicopper oxidase [Bradyrhizobium... 213 2e-53 ref|YP_004108801.1| multicopper oxidase type 2 [Rhodopseudomonas... 212 7e-53 >ref|NP_771586.1| hypothetical protein blr4946 [Bradyrhizobium japonicum USDA 110] dbj|BAC50211.1| blr4946 [Bradyrhizobium japonicum USDA 110] Length = 434 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 183/302 (60%), Gaps = 24/302 (7%) Query: 4 RPARPRPLIVTGTSPVAVDRDEVLLIEEWRLRPDGSAIPAGNDPKDSTQIHTINGKTS-- 61 +PARP P+I TS +AVDRDEVLLIEEWRLRPDG+A+P G DPKD+T ++TING+TS Sbjct: 142 QPARPLPIIAEETSRIAVDRDEVLLIEEWRLRPDGTALPPGRDPKDATPLYTINGQTSCE 201 Query: 62 ------------YXAGQCPPQTPLYQRQPTQRAGGQAGEPRRPGDGHRRPASRTVSGPQR 109 + G + R G+P P V P Sbjct: 202 LAAAANERLRLRFINGSQRTVLAIKLENHDVRVMALDGQPAEPFPARN---GALVLAPGG 258 Query: 110 CAGTXLPAAAPMSSSTRPDLPEPASRSCXVGKLAISNDPPVRPAPFPPAPPLPGNDMPAQ 169 A + AA ++ L + +G L+IS R AP P PLP N +P Q Sbjct: 259 RADAFVDAA-----TSAQFLLHDGKEARPIGNLSISGRLE-RRAPLLPPQPLPANALPDQ 312 Query: 170 LDLKSAARFELTLGTP-TEWFRPADFKPSAAPAFQAKAGRSVVLALTNRGAIASVFHLHG 228 LDLK A RF++ LG P T W RPADF S+APAF+ + GR+VVL L N + +VFHLHG Sbjct: 313 LDLKGALRFDVALGAPDTGWTRPADFSTSSAPAFRTRTGRTVVLTLKNPAPLTAVFHLHG 372 Query: 229 HHFRLLDRLDDGWKPFWLDTLAIEPGQTQRIAFLAEYPGRYLIEQVATDWAAPRLVRWYS 288 H FRLLD+LDDGWKP+WLDTLAIE GQTQRIAF A PGR+LIE V TDWAAPRLVRWY+ Sbjct: 373 HPFRLLDKLDDGWKPYWLDTLAIESGQTQRIAFAATSPGRWLIESVVTDWAAPRLVRWYA 432 Query: 289 VQ 290 V+ Sbjct: 433 VE 434 >ref|ZP_08629604.1| multicopper oxidase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08097.1| multicopper oxidase [Bradyrhizobiaceae bacterium SG-6C] Length = 433 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 173/308 (56%), Gaps = 32/308 (10%) Query: 4 RPARPRPLIVTGTSPVAVDRDEVLLIEEWRLRPDGSAIPAGNDPKDSTQIHTINGKTSYX 63 RP+ R LIV P+AVDRDEVLLIE+WR++ DG+AI G+ P +T +T+NG+ + Sbjct: 137 RPSAGRALIVEDAPPIAVDRDEVLLIEDWRVKADGTAIAPGSAPDGTTATYTVNGQAALN 196 Query: 64 AG------------QCPPQTPLYQRQPTQRA-----GGQAGEPRRPGDGHR--RPASRT- 103 ++PL + G EP DG P SR Sbjct: 197 IAAKLNERLRLRFINGCARSPLGLKIENHDVRVMAIDGLPAEPFLARDGQLVLAPGSRID 256 Query: 104 -VSGPQRCAGTXLPAAAPMSSSTRPDLPEPASRSCXVGKLAISNDPPVRPAPFPPAPPLP 162 R GT +S D P + + ++ +SND PVRPA P A P Sbjct: 257 AFIDATRAPGT-------VSKIILHDGTGPRT----IAQITMSNDAPVRPATLPAASAFP 305 Query: 163 GNDMPAQLDLKSAARFELTLGTPTEWFRPADFKPSAAPAFQAKAGRSVVLALTNRGAIAS 222 N +P +L+L+ A R +L+L +W P+ F +A PA+ K GR+VV+A++N A Sbjct: 306 LNGLPERLNLQGALRSDLSLDPNAQWIAPSTFDAAAKPAYSVKRGRTVVMAISNPTATPI 365 Query: 223 VFHLHGHHFRLLDRLDDGWKPFWLDTLAIEPGQTQRIAFLAEYPGRYLIEQVATDWAAPR 282 F LHGHHFRLLDRLDDGWKPFWLDTL ++ GQTQRIAFLAEYPGR+L+E A +WAAP+ Sbjct: 366 AFRLHGHHFRLLDRLDDGWKPFWLDTLMLDKGQTQRIAFLAEYPGRWLMESAAINWAAPK 425 Query: 283 LVRWYSVQ 290 LVR Y V+ Sbjct: 426 LVRTYVVE 433 >ref|YP_532261.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] gb|ABD87942.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 441 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 174/302 (57%), Gaps = 33/302 (10%) Query: 9 RPLIVTGTSPVAVDRDEVLLIEEWRLRPDGSAIPAGNDPKDSTQIHTINGKTSYX----A 64 R +IV PVAVDRDEVLLIE+WR+ PDG A+ G D KD+ ++T+NG T++ A Sbjct: 151 RAVIVEEAEPVAVDRDEVLLIEDWRVAPDGRALAPGRDAKDAATVYTVNGATAFELKIRA 210 Query: 65 GQ---------CPPQTPLYQ----RQPTQRAGGQAGEP--RRPGDGHRRPASRT--VSGP 107 GQ C + GQ EP R G P +R Sbjct: 211 GQRLRLRFINGCQRSVAAVKIADHECQVMAIDGQPCEPFPARGGQLLLAPGTRVDGFVDA 270 Query: 108 QRCAGTXLPAAAPMSSSTRPDLPEPASRSCXVGKLAISNDPPVRPAPFPPAPPLPGNDMP 167 QR G+ ++ RP + +L S +PPVR PPA PLP N +P Sbjct: 271 QRPPGSSAAILLHDGATARP-----------IARLVYSEEPPVRAGSLPPAAPLPSNGLP 319 Query: 168 AQLDLKSAARFELTLGTPTEWFRPADFKPSAAPAFQAKAGRSVVLALTNRGAIASVFHLH 227 AQLDLK+A R +L L W RPA F P+AAPAF+ K GR+VVLAL++R A VFHLH Sbjct: 320 AQLDLKAAQRVDLAL-DGAAWQRPAAFNPAAAPAFRTKRGRTVVLALSHRAAGPMVFHLH 378 Query: 228 GHHFRLLDRLDDGWKPFWLDTLAIEPGQTQRIAFLAEYPGRYLIEQVATDWAAPRLVRWY 287 GHHFRLLDRLDDGWKPFWLDTL + PGQTQR+AF AE G +L+E +A DW+APR+V Y Sbjct: 379 GHHFRLLDRLDDGWKPFWLDTLVVGPGQTQRVAFAAETAGPWLLEAMAADWSAPRMVSTY 438 Query: 288 SV 289 V Sbjct: 439 LV 440 >ref|YP_001206178.1| putative multicopper oxidase [Bradyrhizobium sp. ORS 278] emb|CAL77953.1| conserved hypothetical protein; Putative multicopper oxidase [Bradyrhizobium sp. ORS 278] Length = 435 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/305 (45%), Positives = 173/305 (56%), Gaps = 32/305 (10%) Query: 5 PARPRPLIVTGTSPVAVDRDEVLLIEEWRLRPDGSAIPAGNDPKDSTQIHTINGKTS-YX 63 P RP P+IV PV DRDEV L+E++R++PDG AI G +DS ++++NG+ Sbjct: 142 PIRPLPVIVDEVLPVTFDRDEVFLVEDFRIKPDGKAIAPGTAAQDSELLYSVNGQLQPDI 201 Query: 64 AGQCPPQTPLYQRQPTQRA-----------------GGQAGEP--RRPGDGHRRPASRTV 104 A + + L RA Q EP R G P RT Sbjct: 202 ALRAQARVRLRFINGCHRAVIAIKIADVEAIRVIAIDSQPAEPFLARNGAVVLPPGGRT- 260 Query: 105 SGPQRCAGTXLPAAAPMSSSTRPDLPEPASRSCXVGKLAISNDPPVRPAPFPPAPPLPGN 164 +PA AP+ P L S + + +L +S +PP R P P PLP N Sbjct: 261 -----DVVIDMPAKAPL-----PVLLHDGSSARPIARLTLSGEPPQRSGPLPAPAPLPSN 310 Query: 165 DMPAQLDLKSAARFELTLGTPTEWFRPADFKPSAAPAFQAKAGRSVVLALTNRGAIASVF 224 +P +LDL+SA R +L L P EW PA F P +APAF+AK GR VVLAL N+ A V Sbjct: 311 GLPDKLDLRSAMRADLALDGP-EWRPPAQFNPGSAPAFKAKPGRVVVLALANKAAGPRVV 369 Query: 225 HLHGHHFRLLDRLDDGWKPFWLDTLAIEPGQTQRIAFLAEYPGRYLIEQVATDWAAPRLV 284 HLHG FRLLDRLDDGWKP+WLDTLA+E GQTQRIAF AE GR+L+E +ATDWAAPRLV Sbjct: 370 HLHGQPFRLLDRLDDGWKPYWLDTLALEAGQTQRIAFSAEAAGRFLVESMATDWAAPRLV 429 Query: 285 RWYSV 289 RWY + Sbjct: 430 RWYEI 434 >ref|YP_004108801.1| multicopper oxidase type 2 [Rhodopseudomonas palustris DX-1] gb|ADU44068.1| multicopper oxidase type 2 [Rhodopseudomonas palustris DX-1] Length = 442 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 162/297 (54%), Gaps = 17/297 (5%) Query: 10 PLIVTGTSPVAVDRDEVLLIEEWRLRPDGSAIPAGNDPKDSTQIHTINGKTS-------- 61 PLIV + P + D+V+LIE++RL DG P+G D + ++T+NGK S Sbjct: 147 PLIVRESEPPQANGDQVVLIEDFRLGEDGRPRPSGVDVGATPWLYTVNGKPSAEFALRAN 206 Query: 62 ----YXAGQCPPQTPLYQRQPTQRAGGQAGEPRRPGDGHRRPASRTVSGPQRCAGTXLPA 117 + + + R A + +P + V P + A Sbjct: 207 GRFRFRFINACQRNVIALRIEDHNVWVMALD-SQPAEPFLARGGALVIAPGGRVDVLIDA 265 Query: 118 AAPMSSSTRPDLPEPASRSCXVGKLAISNDPPVRPAPFPPAPPLPGNDMPAQLDLKSAAR 177 A P S T L + + + +L +DPP+RPAP P P P N +PAQL L A R Sbjct: 266 ARPPGSRTAITLHDGGGKPVPLARLVYVDDPPLRPAPLPQPAPFPANGLPAQLPLGGALR 325 Query: 178 FELTLGTPT----EWFRPADFKPSAAPAFQAKAGRSVVLALTNRGAIASVFHLHGHHFRL 233 L LG +WF P F P+A PAFQ K GR+VVLALTN+ + VFHLHGHHFRL Sbjct: 326 TALLLGALVNAQLDWFAPDKFNPAAGPAFQVKRGRTVVLALTNQATMPMVFHLHGHHFRL 385 Query: 234 LDRLDDGWKPFWLDTLAIEPGQTQRIAFLAEYPGRYLIEQVATDWAAPRLVRWYSVQ 290 LDRLDDGWKPFWLDTLAI+ GQTQRIAF AE+PG +LIE A W+ PRLVR Y V Sbjct: 386 LDRLDDGWKPFWLDTLAIDAGQTQRIAFAAEHPGLWLIEAYAAKWSEPRLVRSYLVS 442