BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0002.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237514.1| hypothetical protein BBta_1375 [Bradyrhizobi... 296 2e-78 ref|ZP_03131311.1| TPR repeat-containing protein [Chthoniobacter... 79 6e-13 ref|YP_002218666.1| TPR repeat-containing protein [Acidithiobaci... 75 1e-11 ref|YP_003846865.1| Methyltransferase type 11 [Gallionella capsi... 72 1e-10 ref|ZP_03127398.1| TPR repeat-containing protein [Chthoniobacter... 71 1e-10 >ref|YP_001237514.1| hypothetical protein BBta_1375 [Bradyrhizobium sp. BTAi1] gb|ABQ33608.1| hypothetical protein BBta_1375 [Bradyrhizobium sp. BTAi1] Length = 282 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/254 (61%), Positives = 188/254 (74%) Query: 2 ALRAQQFAQAEQIATNILKSNRTDRHAALLLAHALMGQNRGGEAIAALERVARRGDDGEV 61 ALR +QFA+AEQIA +IL++ +TDR A L+ AHAL+GQ R EA+A LE+ RG D E+ Sbjct: 19 ALRGRQFARAEQIAASILRTAKTDRAALLVHAHALLGQQRASEAVAPLEKAILRGSDPEL 78 Query: 62 ETLLGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLA 121 ETLLGA LC + R DGIAQLR+TAARRPP+ P+FQELAG+LAK+ + EAI IE LA Sbjct: 79 ETLLGAALCESRRGADGIAQLRKTAARRPPFLPAFQELAGRLAKSAELTEAIKVIEDALA 138 Query: 122 LAPESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAA 181 LAP+SVDLKLDLGRL + ND ARA + L AAR+AAPGRPD+L +L V L GDYA AA Sbjct: 139 LAPDSVDLKLDLGRLCLQANDRARARANLVAAREAAPGRPDILVELAWVQFLDGDYAEAA 198 Query: 182 DAFRRVLAQYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQPQLFGRAAFVMASGSH 241 ++ L P+D TRA+LA CL E G+R AEAALR+V+RG+P L RAA+ M SH Sbjct: 199 GTYKHALGLRPEDTQTRANLAMCLMEMGDRAGAEAALRTVVRGRPHLLSRAAYTMVVSSH 258 Query: 242 GRFFFSQSAAAKFL 255 GRFFF S AAKFL Sbjct: 259 GRFFFRPSDAAKFL 272 >ref|ZP_03131311.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] gb|EDY18047.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] Length = 747 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 16/237 (6%) Query: 1 LALRAQQFAQAEQIATNILKSNRTDRHAALLLAHALMGQNRGG---------EAIAALER 51 L + A Q +AE +A N+L +R AAL+ H + N G EA+A+ R Sbjct: 44 LGVAAMQTGRAE-LAVNLL-----NRVAALVPNHPAVHSNLGEAYRGLGKFEEAVASFRR 97 Query: 52 VAR-RGDDGEVETLLGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYD 110 + + DD + LG +L G++ + IA RR +P Y + L LA+ G Sbjct: 98 ALQLKPDDVLAQYNLGNVLVEWGKLEEAIAAYRRVLTLKPDYVDAHNNLGIALARQGVMT 157 Query: 111 EAISTIEAGLALAPESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRV 170 EA + L LAP + G +L E A A + AP +P+ N G Sbjct: 158 EATEVLRRALQLAPADAGAWNNFGIVLAEQGRFGEAVEAYRRALELAPNQPEAHNNFGNA 217 Query: 171 LILRGDYAAAADAFRRVLAQYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQPQ 227 G + +A A+RR + PD +A+L L EQG D A AA R + QP+ Sbjct: 218 CKELGQFESAVAAYRRAVELRPDSAEFQANLGNGLREQGRFDEAMAAYRHALALQPK 274 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 96/247 (38%), Gaps = 9/247 (3%) Query: 19 LKSNRTDRHAALLLAHALMGQNRGGEAIAALERVARRGD-DGEVETLLGALLCGAGRVTD 77 LK + D H L +A L Q EA L R + D G +L GR + Sbjct: 135 LKPDYVDAHNNLGIA--LARQGVMTEATEVLRRALQLAPADAGAWNNFGIVLAEQGRFGE 192 Query: 78 GIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALAPESVDLKLDLGRLL 137 + RR P + + GQ++ A++ + L P+S + + +LG L Sbjct: 193 AVEAYRRALELAPNQPEAHNNFGNACKELGQFESAVAAYRRAVELRPDSAEFQANLGNGL 252 Query: 138 QETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADAFRRVLAQYPDDRST 197 +E A + A P R + +++G L +G AA A+R L PD Sbjct: 253 REQGRFDEAMAAYRHALALQPKRAETHHEMGNALAGQGQLDAAVLAYRATLELKPDYGVA 312 Query: 198 RAHLATCLFEQGERDAAEAALRSVMRGQP-QLFGRAAFVM-----ASGSHGRFFFSQSAA 251 R +L L +QG D A AA R + QL ++ + A G+ G Q Sbjct: 313 RCNLGNVLRDQGMLDEAIAAYRRAAESKSAQLVAQSNLIYTLHYHADGNEGEIRREQCLW 372 Query: 252 AKFLGGD 258 + GGD Sbjct: 373 NERFGGD 379 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 62/164 (37%) Query: 64 LLGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALA 123 LLG GR + L R AA P + L G+++EA+++ L L Sbjct: 43 LLGVAAMQTGRAELAVNLLNRVAALVPNHPAVHSNLGEAYRGLGKFEEAVASFRRALQLK 102 Query: 124 PESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADA 183 P+ V + +LG +L E + A + P D N LG L +G A + Sbjct: 103 PDDVLAQYNLGNVLVEWGKLEEAIAAYRRVLTLKPDYVDAHNNLGIALARQGVMTEATEV 162 Query: 184 FRRVLAQYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQPQ 227 RR L P D + L EQG A A R + P Sbjct: 163 LRRALQLAPADAGAWNNFGIVLAEQGRFGEAVEAYRRALELAPN 206 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 56/129 (43%) Query: 98 ELAGQLAKAGQYDEAISTIEAGLALAPESVDLKLDLGRLLQETNDIARAASVLTAARDAA 157 EL Q +AG+ EA + L P+ +D LG +T A ++L Sbjct: 9 ELGLQHHQAGRLAEAEACYREILEAQPDHLDALHLLGVAAMQTGRAELAVNLLNRVAALV 68 Query: 158 PGRPDVLNQLGRVLILRGDYAAAADAFRRVLAQYPDDRSTRAHLATCLFEQGERDAAEAA 217 P P V + LG G + A +FRR L PDD + +L L E G+ + A AA Sbjct: 69 PNHPAVHSNLGEAYRGLGKFEEAVASFRRALQLKPDDVLAQYNLGNVLVEWGKLEEAIAA 128 Query: 218 LRSVMRGQP 226 R V+ +P Sbjct: 129 YRRVLTLKP 137 Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 5/176 (2%) Query: 72 AGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALAPESVDLKL 131 AGR+ + A R +P + + L + G+ + A++ + AL P + Sbjct: 17 AGRLAEAEACYREILEAQPDHLDALHLLGVAAMQTGRAELAVNLLNRVAALVPNHPAVHS 76 Query: 132 DLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQ--LGRVLILRGDYAAAADAFRRVLA 189 +LG + A + A P DVL Q LG VL+ G A A+RRVL Sbjct: 77 NLGEAYRGLGKFEEAVASFRRALQLKPD--DVLAQYNLGNVLVEWGKLEEAIAAYRRVLT 134 Query: 190 QYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQPQLFG-RAAFVMASGSHGRF 244 PD +L L QG A LR ++ P G F + GRF Sbjct: 135 LKPDYVDAHNNLGIALARQGVMTEATEVLRRALQLAPADAGAWNNFGIVLAEQGRF 190 >ref|YP_002218666.1| TPR repeat-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACH82459.1| TPR repeat-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 505 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 2/225 (0%) Query: 4 RAQQFAQAEQIATNILKSNRTDRHAALLLAHALMGQNRGGEAIAALERV-ARRGDDGEVE 62 R + + AE++ ++ L N + A L+ L+ NR EA A+ +V + D+ E Sbjct: 165 RQGKLSDAERVLSDALNINENNVAALHNLSVLLLYLNRYSEAEHAIMKVLSLMPDNAESI 224 Query: 63 TLLGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLAL 122 +LGA+ G R+++G R+ + +P Y + L L+ G+ DEAI T L + Sbjct: 225 FILGAISVGKKRLSEGEIAFRKALSIKPAYPEALMNLGAILSDQGRVDEAIGTFRKALTI 284 Query: 123 APESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAAD 182 P+ ++ + LG L + + A +VL A P P+ L LG L G + Sbjct: 285 KPDYLEALMRLGVALGRQDRMDEAETVLRKALAIKPDYPEALMNLGVTLGHEGRWEETET 344 Query: 183 AFRRVLAQYPDDRSTRAHLATCLFEQGE-RDAAEAALRSVMRGQP 226 R+ L PD +L L QG D AE LR + QP Sbjct: 345 LLRQALTIKPDYPEALMNLGAALSRQGRCLDEAENILRRTLAIQP 389 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 65 LGALLCGAGRVTDGIAQ-LRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALA 123 LGA L GR D LRRT A +P + + L L K G+++EA + + +A+ Sbjct: 363 LGAALSRQGRCLDEAENILRRTLAIQPDHPDALVNLGATLNKQGRWNEAETILRQAVAIK 422 Query: 124 PESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADA 183 PE D ++LG +L + + A ++L A P + D L LG +L RG A A Sbjct: 423 PEHADALINLGAVLSKQGRLDEAETILRQALTIMPDQADALVNLGVILRQRGCPEEAKTA 482 Query: 184 FRRVLAQYPD 193 F++ L P+ Sbjct: 483 FQQALTANPN 492 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 2/202 (0%) Query: 28 AALLLAHALMGQNRGGEAIAALER-VARRGDDGEVETLLGALLCGAGRVTDGIAQLRRTA 86 A + L AL Q+R EA L + +A + D E LG L GR + LR+ Sbjct: 291 ALMRLGVALGRQDRMDEAETVLRKALAIKPDYPEALMNLGVTLGHEGRWEETETLLRQAL 350 Query: 87 ARRPPYFPSFQELAGQLAKAGQ-YDEAISTIEAGLALAPESVDLKLDLGRLLQETNDIAR 145 +P Y + L L++ G+ DEA + + LA+ P+ D ++LG L + Sbjct: 351 TIKPDYPEALMNLGAALSRQGRCLDEAENILRRTLAIQPDHPDALVNLGATLNKQGRWNE 410 Query: 146 AASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADAFRRVLAQYPDDRSTRAHLATCL 205 A ++L A P D L LG VL +G A R+ L PD +L L Sbjct: 411 AETILRQAVAIKPEHADALINLGAVLSKQGRLDEAETILRQALTIMPDQADALVNLGVIL 470 Query: 206 FEQGERDAAEAALRSVMRGQPQ 227 ++G + A+ A + + P Sbjct: 471 RQRGCPEEAKTAFQQALTANPN 492 >ref|YP_003846865.1| Methyltransferase type 11 [Gallionella capsiferriformans ES-2] gb|ADL55101.1| Methyltransferase type 11 [Gallionella capsiferriformans ES-2] Length = 949 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 6/210 (2%) Query: 24 TDRHAALLLAHALMG-----QNRGGEAI-AALERVARRGDDGEVETLLGALLCGAGRVTD 77 T+ + A + ++G Q + EA+ AL +D E LG +L GR T+ Sbjct: 177 TEHYPAHWVGWKMLGVIFQQQGKNSEALMPALTASKLSPNDAETHNNLGIILDSLGRPTE 236 Query: 78 GIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALAPESVDLKLDLGRLL 137 R+ P Y + L L K+G EA ++ + LAL P +LG +L Sbjct: 237 ACVSYRKALTLNPNYIQAHSNLGATLQKSGHMKEAATSYQKALALNPGYAKAHNNLGAVL 296 Query: 138 QETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADAFRRVLAQYPDDRST 197 E + AA+ A P L V G + A D+ R L PDD Sbjct: 297 SEMGEFQLAAASFKRALHIQPDNAQAHYNLSIVQKKMGAASDAIDSCRAALQINPDDADA 356 Query: 198 RAHLATCLFEQGERDAAEAALRSVMRGQPQ 227 ++ T LF+ AEAA R +R QP+ Sbjct: 357 HYNMGTILFDLNHLSEAEAAFRQALRCQPE 386 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 8/170 (4%) Query: 60 EVETLLGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAG 119 E+ +L+ L +G T+ + R P ++ ++ L + G+ EA+ Sbjct: 153 EINSLVS--LFSSGNFTEAENRARSMTEHYPAHWVGWKMLGVIFQQQGKNSEALMPALTA 210 Query: 120 LALAPESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVL---NQLGRVLILRGD 176 L+P + +LG +L + + R + R A P+ + + LG L G Sbjct: 211 SKLSPNDAETHNNLGIIL---DSLGRPTEACVSYRKALTLNPNYIQAHSNLGATLQKSGH 267 Query: 177 YAAAADAFRRVLAQYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQP 226 AA ++++ LA P +L L E GE A A+ + + QP Sbjct: 268 MKEAATSYQKALALNPGYAKAHNNLGAVLSEMGEFQLAAASFKRALHIQP 317 >ref|ZP_03127398.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] gb|EDY22437.1| TPR repeat-containing protein [Chthoniobacter flavus Ellin428] Length = 630 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 3/210 (1%) Query: 19 LKSNRTDRHAALLLAHALMGQNRGGEAIAALER-VARRGDDGEVETLLGALLCGAGRVTD 77 L+ + D H L AL+ Q GEA+ L R + R E LG L G GR + Sbjct: 103 LQPDHADAHNNL--GSALIAQGVLGEAVTVLRRTIELRPTLAEAHNNLGIALGGEGRGEE 160 Query: 78 GIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALAPESVDLKLDLGRLL 137 +A RR +P Y + L L + EAI+ +A+ P+ V+ +LG L Sbjct: 161 AVAACRRAVELQPGYANGYNSLGVALVNQRELAEAIAAFRRAIAVYPDYVEAYCNLGNAL 220 Query: 138 QETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADAFRRVLAQYPDDRST 197 + + A + A + P + N LG LI +G A DAFRR L P+ + Sbjct: 221 VDEGSLDEAVATCRRAIEIRPNHAEAHNNLGVALIAQGALQEAGDAFRRALELQPNQAES 280 Query: 198 RAHLATCLFEQGERDAAEAALRSVMRGQPQ 227 ++L+ L +G D A A L + QPQ Sbjct: 281 HSNLSVTLMAEGRLDEAGAELCRAIELQPQ 310 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 69/163 (42%) Query: 65 LGALLCGAGRVTDGIAQLRRTAARRPPYFPSFQELAGQLAKAGQYDEAISTIEAGLALAP 124 LGA GR + +A+ RR +P + + L L G EA++ + + L P Sbjct: 80 LGAAQRNLGRFDEAMAEFRRAIQLQPDHADAHNNLGSALIAQGVLGEAVTVLRRTIELRP 139 Query: 125 ESVDLKLDLGRLLQETNDIARAASVLTAARDAAPGRPDVLNQLGRVLILRGDYAAAADAF 184 + +LG L A + A + PG + N LG L+ + + A A AF Sbjct: 140 TLAEAHNNLGIALGGEGRGEEAVAACRRAVELQPGYANGYNSLGVALVNQRELAEAIAAF 199 Query: 185 RRVLAQYPDDRSTRAHLATCLFEQGERDAAEAALRSVMRGQPQ 227 RR +A YPD +L L ++G D A A R + +P Sbjct: 200 RRAIAVYPDYVEAYCNLGNALVDEGSLDEAVATCRRAIEIRPN 242