BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0033.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206082.1| transcriptional regulator [Bradyrhizobium sp... 302 2e-80 ref|YP_001240420.1| transcriptional regulator [Bradyrhizobium sp... 298 3e-79 ref|ZP_08264754.1| helix-turn-helix family protein [Asticcacauli... 263 1e-68 ref|YP_004169763.1| hypothetical protein [Deinococcus maricopens... 261 5e-68 ref|YP_003612367.1| XRE family transcriptional regulator [Entero... 213 1e-53 >ref|YP_001206082.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL77857.1| putative transcriptional regulatory protein with HTH domain [Bradyrhizobium sp. ORS 278] Length = 188 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/188 (77%), Positives = 164/188 (87%) Query: 1 MDTLVDDLSQRLAQRIRLERDGRGWSLADLAERAGVSKATISKIERAEVSPTAVVLVRLA 60 MD ++D SQRLA+R++LERD RGWSLADLAER+GVSKATISKIERAEVSPTAVVLV+LA Sbjct: 1 MDQTIEDFSQRLARRLQLERDSRGWSLADLAERSGVSKATISKIERAEVSPTAVVLVKLA 60 Query: 61 SAFDLTLAGLMLRAEGQGERLSRAAAQTVWRDPETGYLRRQVFSRPDHPVELVRVELPPK 120 SAFDLTLAGLMLRAE Q ERLS+A Q VWRDP+T YLRRQV+ RPDHP+ELV VE+P + Sbjct: 61 SAFDLTLAGLMLRAEAQSERLSKAEEQPVWRDPDTDYLRRQVYLRPDHPIELVTVEMPAR 120 Query: 121 QTVTLPASSYAHIRQLVWVLSGSVVITEGGARHVLAAGDCLGFGPPAETTFANETNASCT 180 ++VTLPASSY HIRQLVWV SG + ITEG RH L GDCLGFGPP +TTFANET+A+C Sbjct: 121 RSVTLPASSYIHIRQLVWVQSGRLTITEGAERHELGPGDCLGFGPPIDTTFANETDAACV 180 Query: 181 YVVALARS 188 YVVALARS Sbjct: 181 YVVALARS 188 >ref|YP_001240420.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36514.1| putative transcriptional regulatory protein with HTH domain [Bradyrhizobium sp. BTAi1] Length = 188 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 144/188 (76%), Positives = 163/188 (86%) Query: 1 MDTLVDDLSQRLAQRIRLERDGRGWSLADLAERAGVSKATISKIERAEVSPTAVVLVRLA 60 MD L+DD S RLA+RI LER+ RGWSLADLA+++GVSKATISKIERAEVSPTAV+LV+LA Sbjct: 1 MDQLIDDFSTRLARRILLERESRGWSLADLADQSGVSKATISKIERAEVSPTAVILVKLA 60 Query: 61 SAFDLTLAGLMLRAEGQGERLSRAAAQTVWRDPETGYLRRQVFSRPDHPVELVRVELPPK 120 SAFDLTLAGLMLRAE + ERLSRA + VWRDP+TGYLRRQ+F RPDHP+ELV VE+P K Sbjct: 61 SAFDLTLAGLMLRAEARAERLSRADDRPVWRDPDTGYLRRQIFLRPDHPIELVTVEMPAK 120 Query: 121 QTVTLPASSYAHIRQLVWVLSGSVVITEGGARHVLAAGDCLGFGPPAETTFANETNASCT 180 ++TLPASSY HIRQLVWV SG + ITEG RHVL GDCLGFGPP +TTFANET+A C Sbjct: 121 ASLTLPASSYIHIRQLVWVQSGRLTITEGTERHVLGPGDCLGFGPPIDTTFANETDAPCV 180 Query: 181 YVVALARS 188 YVVALARS Sbjct: 181 YVVALARS 188 >ref|ZP_08264754.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gb|EGF91389.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 182 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/182 (69%), Positives = 158/182 (86%), Gaps = 1/182 (0%) Query: 7 DLSQRLAQRIRLERDGRGWSLADLAERAGVSKATISKIERAEVSPTAVVLVRLASAFDLT 66 D+ + LA R++LER+ R WSLA+LA+R+GVSKA I+KIE A+VSPTAVVLV+LA+AF LT Sbjct: 2 DILEDLAHRLKLERETRNWSLAELAQRSGVSKAAINKIENAQVSPTAVVLVKLAAAFGLT 61 Query: 67 LAGLMLRAEGQGERLSRAAAQTVWRDPETGYLRRQVFSRPDHPVELVRVELPPKQTVTLP 126 LAGL+++AEG G+RLSRAA Q VWRDP++ Y+RRQVF RP+HPVE+V+VELP Q+VTLP Sbjct: 62 LAGLLVKAEG-GDRLSRAADQPVWRDPDSRYIRRQVFVRPNHPVEVVKVELPAGQSVTLP 120 Query: 127 ASSYAHIRQLVWVLSGSVVITEGGARHVLAAGDCLGFGPPAETTFANETNASCTYVVALA 186 ASS AHIRQ+VWV++GS+ +TEGG R+ LA GDCLGFGPPAE TFAN T+ CTY+VALA Sbjct: 121 ASSLAHIRQVVWVMTGSLTLTEGGRRYDLADGDCLGFGPPAEVTFANATDLPCTYLVALA 180 Query: 187 RS 188 RS Sbjct: 181 RS 182 >ref|YP_004169763.1| hypothetical protein [Deinococcus maricopensis DSM 21211] gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/187 (65%), Positives = 154/187 (82%) Query: 1 MDTLVDDLSQRLAQRIRLERDGRGWSLADLAERAGVSKATISKIERAEVSPTAVVLVRLA 60 M T+ DD S +A+RIR+ER+ R WS ADLAERAGV+KATISK+ER ++SPTAV LVRLA Sbjct: 1 MTTIGDDTSALIARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLA 60 Query: 61 SAFDLTLAGLMLRAEGQGERLSRAAAQTVWRDPETGYLRRQVFSRPDHPVELVRVELPPK 120 +AFDLTLAGL+LRAE +G RLSRA+ Q WRDP+TGY+R QVF+RPDHP+EL R++LP + Sbjct: 61 TAFDLTLAGLLLRAETEGARLSRASDQPTWRDPDTGYVRTQVFARPDHPLELARIDLPAR 120 Query: 121 QTVTLPASSYAHIRQLVWVLSGSVVITEGGARHVLAAGDCLGFGPPAETTFANETNASCT 180 Q VTLPA+SY HIRQ++WV +G++ + E G H+L AGDCLGFG P++ T AN+T+ CT Sbjct: 121 QRVTLPAASYTHIRQVIWVQNGALTVHEDGQMHLLHAGDCLGFGAPSDVTLANDTDTPCT 180 Query: 181 YVVALAR 187 YVV LAR Sbjct: 181 YVVLLAR 187 >ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/183 (55%), Positives = 132/183 (72%) Query: 1 MDTLVDDLSQRLAQRIRLERDGRGWSLADLAERAGVSKATISKIERAEVSPTAVVLVRLA 60 M+T+ D ++QR++ RIRLER+ RGWSL++LA+RAGVS+A I KIER + SPTA +L RL+ Sbjct: 1 MNTITDTMNQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDSSPTATLLARLS 60 Query: 61 SAFDLTLAGLMLRAEGQGERLSRAAAQTVWRDPETGYLRRQVFSRPDHPVELVRVELPPK 120 AF ++++ L+ RAE Q +L R A Q VWRDP+T YLRR V R D P++LV+VELP Sbjct: 61 GAFGISMSTLIARAEMQEGKLLRLANQPVWRDPQTHYLRRHVSPRTDLPIDLVQVELPAG 120 Query: 121 QTVTLPASSYAHIRQLVWVLSGSVVITEGGARHVLAAGDCLGFGPPAETTFANETNASCT 180 V +PASSYA RQL+W+ SG +V EG RH + AGDCL GPP + F NETN C Sbjct: 121 SDVPMPASSYALARQLIWLQSGELVFQEGDTRHEMQAGDCLELGPPNDCRFINETNEPCV 180 Query: 181 YVV 183 Y+V Sbjct: 181 YLV 183