BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0027.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07027746.1| TRAP-type uncharacterized transport system pe... 288 1e-75 ref|YP_781626.1| TRAP transporter solute receptor TAXI family pr... 192 1e-46 ref|YP_002363043.1| TRAP transporter solute receptor, TAXI famil... 185 1e-44 ref|YP_001202465.1| putative signal peptide [Bradyrhizobium sp. ... 184 3e-44 ref|NP_767173.1| hypothetical protein blr0533 [Bradyrhizobium ja... 184 4e-44 >ref|ZP_07027746.1| TRAP-type uncharacterized transport system periplasmic component-like protein [Afipia sp. 1NLS2] gb|EFI50567.1| TRAP-type uncharacterized transport system periplasmic component-like protein [Afipia sp. 1NLS2] Length = 438 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 169/433 (39%), Positives = 254/433 (58%), Gaps = 11/433 (2%) Query: 1 MISVRMPLWLRVISLAGVVLLCTAAGLYGYRWYSRPVTLTVAV-----------XLAIAN 49 M + +P WLR+ + VV + L YR Y RP LTVAV L + Sbjct: 1 MKAYFIPFWLRLTIVISVVCVVIGGVLAAYRVYMRPTVLTVAVGSLDGETNKIASLLAGH 60 Query: 50 QLVSDGASVRLKVIDTGTAVESGKQFAAGAVDLAAVRGDVGDVSKAQAIVVLSHMTVLLI 109 S ASV LK+I+ + + F G DLA VR D ++ KA+ + ++ +++ Sbjct: 61 IAASSTASVHLKIINEPDILAAANGFREGKADLAVVRADTENLPKARTVAQVARAAAVIV 120 Query: 110 APPGSSIDSISKLKGQTVGVLGGDANAKIVDVLNNAYDLARNKTVFRNLSLPDARKAVQS 169 P GS+ +L G+T+GV+G + N+ +V L+N YD AR K F+N+S+ DAR+A+ S Sbjct: 121 TPAGSNYTKFRELSGKTIGVVGAEINSGLVTALSNEYDTARLKIAFKNISINDARQAIIS 180 Query: 170 KQVNALLVVIPLTGKYIALVKGFFPQGTKATPVLIPIDAAAAIADGNRAYESFDVPKGTL 229 +V ALL+V+P+ +YIA + F + P ++ ID A AIA+ RAY F VP+G+L Sbjct: 181 NEVAALLMVLPIARRYIAYIDKIFQNDSDLAPNILSIDGAEAIANTERAYNVFVVPQGSL 240 Query: 230 RGSPPVPDDDVTTLRTSLYLVAQKSLSTDVATNLTQSILKVRRELLRENPLFAQITSPST 289 +GSP +P D+ TL T++YLVA+ L D+ NLT+ I+ +R+L E P AQI +P Sbjct: 241 QGSPQIPPDNRITLATNVYLVARDDLDPDLVANLTREIMIAKRDLGIEQPALAQIIAPEL 300 Query: 290 DADAYLPVHPGALAVYNGTTQSFLDEYSNYIYLGPMILGGIASVLAAAWKFLGIGQPQFR 349 D+ AY+PVHPGA YN T + +LD+Y+N+I+L P+I G A+ AA WKFL +F+ Sbjct: 301 DSAAYIPVHPGAAEYYNNTQRDWLDKYANWIFLLPIIFGIGATTFAATWKFLEFENDRFQ 360 Query: 350 EGPLDTLYGLARRIRTVSFESELSAIEDEIDNILKGERLKAEAGDENAVDPATLNVVAHR 409 E + T Y L R+IR+ + E EL IE+EID++L A G E+ + L+ A R Sbjct: 361 ETLMATNYHLPRKIRSATSEIELQQIEEEIDSLLHAHLTHARPGRESDSNMLLLHSAAQR 420 Query: 410 LENLVHDRRAALL 422 L+NL+H +R+ ++ Sbjct: 421 LDNLIHHQRSRIV 433 >ref|YP_781626.1| TRAP transporter solute receptor TAXI family protein [Rhodopseudomonas palustris BisA53] gb|ABJ06646.1| TRAP transporter solute receptor, TAXI family [Rhodopseudomonas palustris BisA53] Length = 476 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/434 (32%), Positives = 207/434 (47%), Gaps = 26/434 (5%) Query: 13 ISLAGVVLLCTAAGLYGYRWYSRPVTLTVAV----------XLAIANQLVSDGASVRLKV 62 I LAGV+ + A GY + RPV L AV A+A D SVRL+ Sbjct: 38 IILAGVLAVVGAVA-SGYYFTMRPVPLRFAVGPQGSDDVRVVQALAQAFSRDHNSVRLRP 96 Query: 63 IDTGTAVESGKQFAAGAVDLAAVRGDVGDVSKAQAIVVLSHMTVLLIAPPG------SSI 116 + T A+ S K A G DLA +RGD+ AQA+ VL ++ P + I Sbjct: 97 LPTDGALGSAKALAEGKADLAVIRGDLEVPKDAQAVAVLRKNVAVIWVPAKKLKKGEARI 156 Query: 117 DSISKLKGQTVGVLGGD-ANAKIVDVLNNAYDLARNKTVFRNLSLPDARKAVQSKQVNAL 175 I+++ G+ +G++G AN ++ V+ Y + K S + A++ +V Sbjct: 157 TKITQIAGKRIGIIGRTPANVDLLKVVLQQYGVDTTKLDIVQFSTSEVADAIKDHKVEVF 216 Query: 176 LVVIPLTGKYIALVKGFFPQGTKATPVLIPIDAAAAIADGNRAYESFDVPKGTLRGSPPV 235 L P+ K A + P + ID+A AIA + +YES ++P G GSPP Sbjct: 217 LAAGPVNSKITA--EAISASSRDGAPSFLAIDSAEAIAQNHASYESAEIPAGAFGGSPPR 274 Query: 236 PDDDVTTLRTSLYLVAQKSLSTDVATNLTQSILKVRRELLRENPLFAQITSPSTDADAYL 295 PDDDV T+ + +VA+KSLS T+ + VR+ L+ + PL A+I +P TD DA + Sbjct: 275 PDDDVKTISFNHLIVARKSLSEHTVAAFTRQLFAVRQSLMTDFPLAAKIETPDTDKDAAI 334 Query: 296 PVHPGALAVYNGTTQSFLDEYSNYIYLGPMILGGIASVLAAAWKFLGIGQPQFREGPLDT 355 P HPGA A +G ++FLD YS+YI+ M S+ A +L + + Sbjct: 335 PAHPGAAAFVDGEEKTFLDRYSDYIWWSLMGFSAFGSIGAWLASYLRKDERNTNFTQRER 394 Query: 356 LYGLARRIRTVSFESELSAIEDEIDNILKGERLKAEAGDENAVDPATL---NVVAHRLEN 412 L + R EL A++ E D IL+ E+G A++ TL N+ + N Sbjct: 395 LLDMIATARKSDSMDELDALQQEADGILRDTLNCYESG---AIEEGTLTAFNIALEQFHN 451 Query: 413 LVHDRRAALLAKPP 426 V DR+A LL+ PP Sbjct: 452 AVADRKALLLSLPP 465 >ref|YP_002363043.1| TRAP transporter solute receptor, TAXI family [Methylocella silvestris BL2] gb|ACK51681.1| TRAP transporter solute receptor, TAXI family [Methylocella silvestris BL2] Length = 433 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/430 (31%), Positives = 230/430 (53%), Gaps = 39/430 (9%) Query: 17 GVVLLCTAAGLYGYRW--YSRPVTLTVAV----------XLAIANQLVSDGASVRLKVID 64 GV+ L + GL + W Y RPV LTVAV ++A L +DG+ +RL + Sbjct: 12 GVLCLASIVGLAAWVWHFYYRPVILTVAVGPPSFDDADLIASMARALAADGSHIRLSIEQ 71 Query: 65 TGTAVESGKQFAAGAVDLAAVR--GDVGDVSKAQAIVVLSHMTVLLIAPPGSSIDSISKL 122 T +ES ++ G LA +R GDV D + ++I +L + ++AP + I++ +L Sbjct: 72 TPGPIESLERLKKGQAQLAVIRNLGDVPD--RVRSIAILHSDPIAIVAPKSAKIENFREL 129 Query: 123 KGQTVGVLGGDAN-AKIVDVLNNAYDLARNKTVFRNLSLP----DARKAVQSKQVNALLV 177 +T+G++G + A+++ + Y F ++ +P + A+ +K+++ALL Sbjct: 130 ADKTLGLVGPPGSYARLMTWMRQRY-----HGEFASVDIPPVVAEIAAAINAKKIDALLF 184 Query: 178 VIPLTGKYIALVKGF--FPQGTKATPVLIPIDAAAAIADGNRAYESFDVPKGTLRGSPPV 235 +IP T K AL + + + T+ + + ID A AI +E ++ G GSPPV Sbjct: 185 IIPTT-KSGALSERWASVRRLTRKSMSFVSIDDAEAIESAAPEFEQGEISSGAFGGSPPV 243 Query: 236 PDDDVTTLRTSLYLVAQKSLSTDVATNLTQSILKVRRELLRENPLFAQITSPSTDADAYL 295 P ++VTTL + YLV +S+ +D+AT LT+ I + R+ + P+ A I + STD DA + Sbjct: 244 PPENVTTLLVTTYLVTDQSVRSDIATELTRFIFENRQRFTPDAPVAALIKAASTDKDAII 303 Query: 296 PVHPGALAVYNGTTQSFLDEYSNYIYLGPMILGGIASVLAAAWKFLGIGQPQFREGP-LD 354 PVH GA ++G Q+ ++ Y +++Y GP+ILG + S L A W L +P E P L Sbjct: 304 PVHKGAKEFFDGEEQTLMERYGDWLYTGPIILGALYSALLAIWHML---RPSPPEAPLLA 360 Query: 355 TLYGLARRIRTVSFESELSAIEDEIDNILKGERLKAEAGD---ENAVDPATLNVVAHRLE 411 ++ ++ I+ + EL AI +D + ER+ AEA D E++ A V+A+ + Sbjct: 361 SVPEISYSIKNATSLGELDAISARVDAAI--ERISAEALDGKLEDSKVGANSLVIAY-IN 417 Query: 412 NLVHDRRAAL 421 LV ++RA L Sbjct: 418 RLVREKRAEL 427 >ref|YP_001202465.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL74215.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 448 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 136/436 (31%), Positives = 207/436 (47%), Gaps = 28/436 (6%) Query: 13 ISLAGVVLLCTA-AGLYGYRWYSRPVTLTVAV----------XLAIANQLVSDGASVRLK 61 I +AG++ + A AG Y + RPV L +AV A+ + A VRL+ Sbjct: 3 IVIAGILAIIGALAG--AYYFAMRPVVLKIAVGPPNSDDLKVVQALTQAFSQNHAYVRLR 60 Query: 62 VIDTGTAVESGKQFAAGAVDLAAVRGDVGDVSKAQAIVVLSHMTVLLIAPPG-------- 113 + + A ESG+ AAG VDLA +RGD+ AQA+ L +L P Sbjct: 61 PVPSEGAAESGQALAAGKVDLAIIRGDLEVPKNAQAVATLRKNVAVLWVPSAGKGKGRKG 120 Query: 114 -SSIDSISKLKGQTVGVLGGD-ANAKIVDVLNNAYDLARNKTVFRNLSLPDARKAVQSKQ 171 + I IS+L G VG++G ANA ++ V+ + Y + K +A +AV+S++ Sbjct: 121 AAKITKISQLAGHKVGIIGRTPANANLLKVVLHQYGVDPAKVEMVQFPASEAAEAVRSQK 180 Query: 172 VNALLVVIPLTGKYIALVKGFFPQGTKATPVLIPIDAAAAIADGNRAYESFDVPKGTLRG 231 + L P+ K A P + ID+A AIA + YE+ ++P G G Sbjct: 181 ADVWLAAGPVNSKITADAIAAA-TKDGGVPTFLAIDSAEAIAQNHPEYEAAEIPAGAFGG 239 Query: 232 SPPVPDDDVTTLRTSLYLVAQKSLSTDVATNLTQSILKVRRELLRENPLFAQITSPSTDA 291 SP P+D++ T+ + ++VA+K L+ + T + VR++LL E PL A+I +P TD Sbjct: 240 SPDRPEDEIKTISFNHHIVARKGLADSTVSAFTHQLFSVRQQLLSEFPLAAKIETPDTDK 299 Query: 292 DAYLPVHPGALAVYNGTTQSFLDEYSNYIYLGPMILGGIASVLAAAW--KFLGIGQPQFR 349 DA +P HPGA A +G ++FLD YS+YI+ G M L + S A AW +L + Sbjct: 300 DAAIPAHPGAAAFVDGEEKTFLDRYSDYIWWGLMALSAMGS--AGAWFAGYLKRDERTIN 357 Query: 350 EGPLDTLYGLARRIRTVSFESELSAIEDEIDNILKGERLKAEAGDENAVDPATLNVVAHR 409 D L + R EL ++ E D IL+ E G N+ + Sbjct: 358 TSLRDRLLEMISIARKSDSTDELDQLQAEADEILRNTLTCFEDGAIEHAALTAFNIALEQ 417 Query: 410 LENLVHDRRAALLAKP 425 N V DR+ L++ P Sbjct: 418 FHNAVADRKLILMSMP 433 >ref|NP_767173.1| hypothetical protein blr0533 [Bradyrhizobium japonicum USDA 110] dbj|BAC45798.1| blr0533 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 214/442 (48%), Gaps = 41/442 (9%) Query: 12 VISLAGVVLLCTAAGLYGYRWYSRPVTLTVAV----------XLAIANQLVSDGASVRLK 61 ++SLA +VL A GY + RPV L +AV A+ + + VRL+ Sbjct: 37 LVSLA-LVLAIVGALAGGYYFAMRPVALKIAVGPPNSDDIKVVQALTQAFSQNKSYVRLR 95 Query: 62 VIDTGTAVESGKQFAAGAVDLAAVRGDVGDVSKAQAIVVLSHMTVLLIAPPGSS------ 115 I T A S + A G VDLA VRGDV AQA+ L V+L + PG Sbjct: 96 PIQTDGATASAEALAEGKVDLAIVRGDVDVPKNAQAVATLRKNVVVLWSVPGKGKKKGAK 155 Query: 116 IDSISKLKGQTVGVLG-GDANAKIVDVLNNAYDLARNKTVFRNLSLPDARKAVQSKQVNA 174 I I++L G VGV+G AN ++ V+ Y + K +A +A+++++ +A Sbjct: 156 ITKIAQLVGHRVGVVGRTQANVNLLKVILQQYGVDPAKVEIIQFPANEAAEAIKAQKADA 215 Query: 175 LLVVIPLTGKYI-----ALVKGFFPQGTKATPVLIPIDAAAAIADGNRAYESFDVPKGTL 229 L P+ K A K F TP + ID+A AIA + YE+ ++P GT Sbjct: 216 YLAAGPVNSKITSDAIAASAKDF------GTPTFLAIDSADAIAQNHPVYEAAEIPAGTY 269 Query: 230 RGSPPVPDDDVTTLRTSLYLVAQKSLSTDVATNLTQSILKVRRELLRENPLFAQITSPST 289 GSP P+D+V T+ + ++VA+K +S T+ + VR++L+ E PL A+I +P T Sbjct: 270 GGSPDRPEDEVKTISFAHHIVARKGVSETTIAAFTRQLFAVRQQLVTEFPLAAKIETPDT 329 Query: 290 DADAYLPVHPGALAVYNGTTQSFLDEYSNYIYLGPMILGGIASVLAAAWKFLGIGQPQFR 349 D DA +PVHPGA A +G ++FLD YS+YI+ M L + S+ AW F G + R Sbjct: 330 DKDAVIPVHPGAAAFVDGEEKTFLDRYSDYIWWTLMALSAMGSI--GAW-FAGYLKKDER 386 Query: 350 EGP---LDTLYGLARRIRTVSFESELSAIEDEIDNILKGERLKAEAGDENAVDPATL--- 403 + D L + R EL ++ E D IL R D A++ L Sbjct: 387 DNNSHLRDRLLDMIAAARKSETMDELDQMQTEADEIL---RDTLHCYDHGAIEEGALTAF 443 Query: 404 NVVAHRLENLVHDRRAALLAKP 425 N+V + + DR+A L + P Sbjct: 444 NIVLDQFHAAIADRKAVLFSMP 465