BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0052.0022.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774073.1| hypothetical protein blr7433 [Bradyrhizobium ja...   180   8e-44
ref|YP_001237891.1| hypothetical protein BBta_1777 [Bradyrhizobi...   164   3e-39
ref|YP_001207886.1| hypothetical protein BRADO6017 [Bradyrhizobi...   153   9e-36
ref|ZP_08627145.1| hypothetical protein CSIRO_0202 [Bradyrhizobi...    98   5e-19
ref|ZP_08121943.1| hypothetical protein PseP1_18787 [Pseudonocar...    62   2e-08

>ref|NP_774073.1| hypothetical protein blr7433 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52698.1| blr7433 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score =  180 bits (456), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 108/141 (76%)

Query: 3   EDLNRQRVLNFLDVYYAGGIEGALDRCSDDVAFLANAPIDILPHMGQHRGKAALRQMWTT 62
           E LNRQRV++ LD +  G IE AL  C+DDV FL +APIDILPHM    GKA LR +W T
Sbjct: 58  EKLNRQRVVHLLDAFARGDIEAALSCCTDDVDFLTHAPIDILPHMVPRHGKAELRALWQT 117

Query: 63  IHERYSDMRYEAPIVVTQGDRVAAQLRVFFRKRNNARVVQFDVAVFYTLRDGKITEIREI 122
           +  RYS++RY+AP +V +GD VA  ++ +FRKR+N RVVQFD+AVFYT R+G++ +IREI
Sbjct: 118 VWSRYSEIRYKAPHIVAEGDEVATYMQTYFRKRSNDRVVQFDMAVFYTFRNGQVAQIREI 177

Query: 123 IDTFDLVQQVLERDVAAALTG 143
           ID++DLVQQVLER++   + G
Sbjct: 178 IDSYDLVQQVLEREIGPLIVG 198


>ref|YP_001237891.1| hypothetical protein BBta_1777 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33985.1| hypothetical protein BBta_1777 [Bradyrhizobium sp. BTAi1]
          Length = 148

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 103/143 (72%)

Query: 1   MGEDLNRQRVLNFLDVYYAGGIEGALDRCSDDVAFLANAPIDILPHMGQHRGKAALRQMW 60
           M E +N+QRV   L+ + AG  +  L  CS+D+   A+APIDI PH+G+  GKA +RQMW
Sbjct: 1   MIEHINKQRVRKLLEAHAAGDFDAVLAHCSEDIEHFASAPIDIFPHLGRRVGKAEVRQMW 60

Query: 61  TTIHERYSDMRYEAPIVVTQGDRVAAQLRVFFRKRNNARVVQFDVAVFYTLRDGKITEIR 120
                RY+D+R+E   ++ +GD+VAA LR+F RKR+N R+VQ+D+A FYTLRDG+I+ IR
Sbjct: 61  EMTRSRYADVRHEIKTMICEGDQVAADLRIFLRKRDNDRIVQYDLAAFYTLRDGRISRIR 120

Query: 121 EIIDTFDLVQQVLERDVAAALTG 143
           EI+DTFDLVQQVLE D+   L  
Sbjct: 121 EIMDTFDLVQQVLECDLGRLLIA 143


>ref|YP_001207886.1| hypothetical protein BRADO6017 [Bradyrhizobium sp. ORS 278]
 emb|CAL79671.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 125

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 91/118 (77%)

Query: 26  LDRCSDDVAFLANAPIDILPHMGQHRGKAALRQMWTTIHERYSDMRYEAPIVVTQGDRVA 85
           L  CSDD+   A+APIDI PH+G+ +GKAA+R+MW     RY+D+R+E   ++ +GD+VA
Sbjct: 3   LAHCSDDIEHFASAPIDIFPHLGRRQGKAAVREMWEVTRSRYADIRHEIVTLICEGDQVA 62

Query: 86  AQLRVFFRKRNNARVVQFDVAVFYTLRDGKITEIREIIDTFDLVQQVLERDVAAALTG 143
           A LRVF RKR+N R+VQ+D+A FYTLRDG+I+ IREI+DTFDLVQQVLE D+   L  
Sbjct: 63  ADLRVFLRKRDNERIVQYDLAAFYTLRDGRISRIREIMDTFDLVQQVLECDLGGLLAA 120


>ref|ZP_08627145.1| hypothetical protein CSIRO_0202 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10179.1| hypothetical protein CSIRO_0202 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 150

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 5   LNRQR----VLNFLDVYYAGGIEGALDRCSDDVAFLANAPIDILPHMGQHRGKAALRQMW 60
           +N Q+    V  F+D YY G +      C+D    L +AP++I PH+G H+G+  + Q  
Sbjct: 1   MNNQKSEACVRTFIDSYYVGEVARMESCCADTFTSLTHAPVEIFPHLGFHQGRDWIAQAI 60

Query: 61  TTIHERYSDMRYEAPIVVTQGDRVAAQLRVFFRKRNNARVVQFDVAVFYTLRDGKITEIR 120
               ERY++ RY    V+    + A   +    KR + RV+   V  F+TLRDG ITE R
Sbjct: 61  RIQKERYAERRYTIEFVIADEVQAATLTQAALTKRGDRRVITLHVGEFFTLRDGLITEHR 120

Query: 121 EIIDTFDLVQQVLERDVA 138
            + D+FDL+QQ+L RD+ 
Sbjct: 121 SMFDSFDLIQQLLGRDLT 138


>ref|ZP_08121943.1| hypothetical protein PseP1_18787 [Pseudonocardia sp. P1]
          Length = 135

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 3   EDLNRQRVLNFLDVYYAGGIEGALDRCSDDVAFLANAPIDILPHMGQHRGKAALRQMWTT 62
           E+ N+Q V  F++V+ +G ++G L R +DD  +     I   P +   + +A  + M + 
Sbjct: 5   EERNKQTVTEFMEVFTSGDVDGILSRMTDDATWWVAGTI---PGISGTKDRAGFKDMVSG 61

Query: 63  IHERYSD--MRYEAPIVVTQGDRVAAQLRVFFRKRNNARVVQFDVAVFYTLRDGKITEIR 120
           I E  +   +R        +GDRVA +   +   R N RV        +T+RDGKI+ ++
Sbjct: 62  IAESTTSGAIRLTPLAFTAEGDRVAVETESYTELR-NGRVYNNLYHFLFTVRDGKISSVK 120

Query: 121 EIIDT 125
           E +DT
Sbjct: 121 EYLDT 125