BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0052.0010.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_319061.1| hypothetical protein Nwi_2456 [Nitrobacter wino...   155   2e-36
ref|YP_568588.1| hypothetical protein RPD_1450 [Rhodopseudomonas...   155   3e-36
ref|YP_578111.1| hypothetical protein Nham_2883 [Nitrobacter ham...   154   6e-36
ref|YP_782873.1| hypothetical protein RPE_3967 [Rhodopseudomonas...   151   3e-35
ref|YP_004110625.1| hypothetical protein Rpdx1_4340 [Rhodopseudo...   148   2e-34

>ref|YP_319061.1| hypothetical protein Nwi_2456 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05709.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 103

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 89/100 (89%)

Query: 1   VSEYYKQEIDRHFAWFEAKLPEKPARFVAWLRKPSSRYVRIPLAILLIIGGIFSFLPVLG 60
           +S+ ++ E+DRH AWFE KLP + ARF+ W+RKPSSR VRIPLAILLIIGGIFSFLPVLG
Sbjct: 1   MSKDHRAELDRHLAWFEGKLPRRFARFIGWVRKPSSRLVRIPLAILLIIGGIFSFLPVLG 60

Query: 61  LWMLPLGLLLFAQDVPFLQKPTAQLLGWIERKWIERERAK 100
           LWMLPLGL+L AQD+PFLQ+P A++LGWIERKW+ER+ AK
Sbjct: 61  LWMLPLGLILIAQDLPFLQRPMARMLGWIERKWLERKAAK 100


>ref|YP_568588.1| hypothetical protein RPD_1450 [Rhodopseudomonas palustris BisB5]
 gb|ABE38687.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 129

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 85/98 (86%)

Query: 5   YKQEIDRHFAWFEAKLPEKPARFVAWLRKPSSRYVRIPLAILLIIGGIFSFLPVLGLWML 64
           ++ E+DRH AWFE+KLPEKPA FV WLRKPSS+YVR+PL ++L+ GG+ SFLPVLGLWML
Sbjct: 10  HRAELDRHLAWFESKLPEKPANFVGWLRKPSSKYVRLPLGVMLVGGGVLSFLPVLGLWML 69

Query: 65  PLGLLLFAQDVPFLQKPTAQLLGWIERKWIERERAKAA 102
           PLGL+L AQDVP L+KPTA+ L W+ERKW+ER+R K A
Sbjct: 70  PLGLVLIAQDVPALEKPTARTLSWVERKWLERQRPKGA 107


>ref|YP_578111.1| hypothetical protein Nham_2883 [Nitrobacter hamburgensis X14]
 gb|ABE63651.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 103

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 89/102 (87%)

Query: 1   VSEYYKQEIDRHFAWFEAKLPEKPARFVAWLRKPSSRYVRIPLAILLIIGGIFSFLPVLG 60
           +S  ++ E+DRHFAWFE K+P + A+F+ W+RKPSSR VRIPLAI+LI+GGIFSFLPVLG
Sbjct: 1   MSNDHRAELDRHFAWFEDKMPPRLAKFIGWVRKPSSRLVRIPLAIMLIVGGIFSFLPVLG 60

Query: 61  LWMLPLGLLLFAQDVPFLQKPTAQLLGWIERKWIERERAKAA 102
           LWMLPLGL+L AQD+PFLQ P A++LGWIERKW+ER+ AK A
Sbjct: 61  LWMLPLGLILIAQDLPFLQAPMARMLGWIERKWMERKAAKRA 102


>ref|YP_782873.1| hypothetical protein RPE_3967 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07893.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 113

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 87/104 (83%), Gaps = 1/104 (0%)

Query: 2   SEYYKQEIDRHFAWFEAKLPEKPARFVAWLRKPSSRYVRIPLAILLIIGGIFSFLPVLGL 61
             ++K E+DRH AWFE KLP++PARFV WLRKPSSR VRIPL+ILL++GG F+FLPVLG 
Sbjct: 3   HHHHKAELDRHLAWFEDKLPQRPARFVGWLRKPSSRLVRIPLSILLMVGGFFAFLPVLGF 62

Query: 62  WMLPLGLLLFAQDVPFLQKPTAQLLGWIERKWIERERAKAAGKR 105
           WMLPLGL+L AQD+PFLQ P A+ LGW+ERKW+ R+ A++  KR
Sbjct: 63  WMLPLGLILIAQDLPFLQGPIARTLGWVERKWLARQ-ARSGAKR 105


>ref|YP_004110625.1| hypothetical protein Rpdx1_4340 [Rhodopseudomonas palustris DX-1]
 gb|ADU45892.1| hypothetical protein Rpdx1_4340 [Rhodopseudomonas palustris DX-1]
          Length = 124

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 83/97 (85%)

Query: 5   YKQEIDRHFAWFEAKLPEKPARFVAWLRKPSSRYVRIPLAILLIIGGIFSFLPVLGLWML 64
           ++ E++RH AWFE+KLP +PA FV WLRKPSSRYVR+PL + LI GG+ SFLPVLGLWML
Sbjct: 6   HRAELERHLAWFESKLPPRPAHFVGWLRKPSSRYVRLPLGVALIGGGVLSFLPVLGLWML 65

Query: 65  PLGLLLFAQDVPFLQKPTAQLLGWIERKWIERERAKA 101
           PLG++L AQDVP L+KPTA+ L W+ERKW+ER+RA+ 
Sbjct: 66  PLGMVLVAQDVPALEKPTARTLNWVERKWLERQRARG 102