BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0008.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07025295.1| Protein of unknown function DUF2478 [Afipia s... 176 1e-42 ref|NP_949935.1| hypothetical protein RPA4601 [Rhodopseudomonas ... 110 1e-22 ref|YP_001994046.1| 3-dehydroquinate dehydratase [Rhodopseudomon... 108 2e-22 ref|YP_004111056.1| hypothetical protein Rpdx1_4778 [Rhodopseudo... 107 6e-22 ref|YP_319604.1| hypothetical protein Nwi_3002 [Nitrobacter wino... 102 3e-20 >ref|ZP_07025295.1| Protein of unknown function DUF2478 [Afipia sp. 1NLS2] gb|EFI52437.1| Protein of unknown function DUF2478 [Afipia sp. 1NLS2] Length = 183 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/179 (50%), Positives = 115/179 (64%) Query: 1 MSVSLSVRTPEVVPPRTPSLAAIVYPQNKYPAAAFEALVASCRRNRLSLAGVVQHPVDAA 60 M S R E V P + AIVY +KYP F+ +V+ C+ L+LAGV+Q+P Sbjct: 1 MCALHSARAIEPVQDSAPDIGAIVYENDKYPDELFKWIVSQCQARGLALAGVLQYPAFEG 60 Query: 61 SERRCDVLLEDLSTGRRTSIYEDRGAGASGCRLDESALAEVAARIEGSLGDAPDVLVLNK 120 + CDV+LEDL +GRRT +++DRG+GASGCRLD AL E A IE P +LVLNK Sbjct: 61 VDPSCDVVLEDLVSGRRTVLFDDRGSGASGCRLDVGALLEAAMEIERGFETNPSLLVLNK 120 Query: 121 FGKAECSGGGLLDLIAKAMECNVTVVIGVPQSNLFAWRVFAGEFGTELSADSGEIERWV 179 FGK E GGG+ ++AKA+E + VVIGVP NL AWR FA EF TEL D +IERW+ Sbjct: 121 FGKIEAEGGGMCGVMAKALERGIPVVIGVPARNLEAWRNFADEFATELPGDIDQIERWL 179 >ref|NP_949935.1| hypothetical protein RPA4601 [Rhodopseudomonas palustris CGA009] emb|CAE30041.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 195 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 3/164 (1%) Query: 18 PSLAAIVYPQNKYPAAAFEALVASCRRNRLSLAGVV--QHPVDAASERRCDVLLEDLSTG 75 PS+ AIVY + L R + +AG+V Q VD S R CD+ +E+LS+ Sbjct: 11 PSILAIVYTDSAAACRLMSDLGRRLRDAGVVVAGLVPYQGAVDDGSPR-CDMEVEELSSH 69 Query: 76 RRTSIYEDRGAGASGCRLDESALAEVAARIEGSLGDAPDVLVLNKFGKAECSGGGLLDLI 135 + E+RG GCR+D A+ E AA I S +AP++L++NKFGK E GGGL D+I Sbjct: 70 FILQLAEERGKQPHGCRVDPEAVQEAAALIAASFRNAPELLIVNKFGKLEADGGGLSDVI 129 Query: 136 AKAMECNVTVVIGVPQSNLFAWRVFAGEFGTELSADSGEIERWV 179 + A++ + V++GVP+ +L WR F E S DS I++W+ Sbjct: 130 SDAVDQGIPVIVGVPERHLATWRCFTSGLAEEASLDSPRIQQWL 173 >ref|YP_001994046.1| 3-dehydroquinate dehydratase [Rhodopseudomonas palustris TIE-1] gb|ACF03571.1| 3-dehydroquinate dehydratase [Rhodopseudomonas palustris TIE-1] Length = 195 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 18 PSLAAIVYPQNKYPAAAFEALVASCRRNRLSLAGVV--QHPVDAASERRCDVLLEDLSTG 75 PS+ AIVY L R + +AG+V Q VD + R CD+ +E+LS+ Sbjct: 11 PSILAIVYTDGAAACGLMSDLGRRLRDAGVVVAGLVPYQGAVDDGNPR-CDMEVEELSSH 69 Query: 76 RRTSIYEDRGAGASGCRLDESALAEVAARIEGSLGDAPDVLVLNKFGKAECSGGGLLDLI 135 + E+RG GCR+D A+ E AA I S +AP++L++NKFGK E GGGL D+I Sbjct: 70 FILQLAEERGKQPHGCRVDPEAVQEAAALIAASFRNAPELLIVNKFGKLEADGGGLSDVI 129 Query: 136 AKAMECNVTVVIGVPQSNLFAWRVFAGEFGTELSADSGEIERWV 179 + A++ + V++GVP+ +L WR F E S DS I++W+ Sbjct: 130 SDAVDQGIPVIVGVPERHLATWRCFTSGLAEEASLDSPRIQQWL 173 >ref|YP_004111056.1| hypothetical protein Rpdx1_4778 [Rhodopseudomonas palustris DX-1] gb|ADU46323.1| Protein of unknown function DUF2478 [Rhodopseudomonas palustris DX-1] Length = 195 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 18 PSLAAIVYPQNKYPAAAFEALVASCRRNRLSLAGVV--QHPVDAASERRCDVLLEDLSTG 75 PS+ AIVY L R + +AG+V Q VD + R CD+ +E+LS+ Sbjct: 11 PSILAIVYTDGAAACRLMSDLGRRLRDAGVVVAGLVPYQGAVDDGTPR-CDMEVEELSSR 69 Query: 76 RRTSIYEDRGAGASGCRLDESALAEVAARIEGSLGDAPDVLVLNKFGKAECSGGGLLDLI 135 + E+RG GCR+D A+ E AA I S +AP++L++NKFGK E GGGL D+I Sbjct: 70 FILQLAEERGKQPHGCRVDPEAVQEAAALIAASFRNAPELLIVNKFGKLEADGGGLSDVI 129 Query: 136 AKAMECNVTVVIGVPQSNLFAWRVFAGEFGTELSADSGEIERWV 179 + A++ + V++GVP+ +L WR F E S DS I++W+ Sbjct: 130 SDAVDQGIPVIVGVPERHLAPWRCFTSGLAEEASLDSPRIQQWL 173 >ref|YP_319604.1| hypothetical protein Nwi_3002 [Nitrobacter winogradskyi Nb-255] gb|ABA06252.1| hypothetical protein Nwi_3002 [Nitrobacter winogradskyi Nb-255] Length = 312 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 36 EALVASCRRNRLS----LAGVVQHPVDAASERRCDVLLEDLSTGRRTSIYEDRGAGASGC 91 +AL+A C + + L G+VQ RRCD+ ++DL G I +DRG A GC Sbjct: 144 DALMAQCAADLATSGYRLGGIVQSNPHREGRRRCDMYVKDLLGGDEVKISQDRGNEARGC 203 Query: 92 RLDESALAEVAARIEGSLGDAPDVLVLNKFGKAECSGGGLLDLIAKAMECNVTVVIGVPQ 151 RLD+ A A + A IE ++ + D+L++NKFG+ E G GL +IA+A+ ++ V+IGV Sbjct: 204 RLDQDAFARIDAWIERAVLEHVDLLIINKFGREEAQGRGLRAVIAEALIADIPVIIGVSS 263 Query: 152 SNLFAWRVFAGEFGTELSADSGEIERW 178 NL + FAGE T LS D + W Sbjct: 264 QNLADFLAFAGESATRLSPDIETMTAW 290