BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0052.0006.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07025298.1| PpiC-type peptidyl-prolyl cis-trans isomerase... 345 3e-93 ref|YP_002288047.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 326 2e-87 ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 238 6e-61 ref|YP_001755258.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 235 5e-60 ref|YP_004677031.1| PpiC-type peptidyl-prolyl cis-trans isomeras... 229 4e-58 >ref|ZP_07025298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] gb|EFI52440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] Length = 274 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 175/274 (63%), Positives = 208/274 (75%), Gaps = 17/274 (6%) Query: 1 MDCSLTDSL-----------------FFFXVQNHPAEKPILAWQAAARALVVRELLLQEA 43 MDCS++ +L VQNHPA+KPI AWQAAARALVVRELLLQEA Sbjct: 1 MDCSVSTALPKPKAISVNGVVISREAIAQEVQNHPADKPIHAWQAAARALVVRELLLQEA 60 Query: 44 RRLEISAEPLRDAEGRSETPEEAAMRALIEREVVTPEPDDASCLRYYEQNQRRFRSGDLY 103 RL I E L D +GR ET EEAAMRAL+EREV TPEPD+A+C R+YEQN +RFR GDLY Sbjct: 61 ARLGIETEALCDPDGRRETAEEAAMRALVEREVKTPEPDEAACRRFYEQNIQRFRLGDLY 120 Query: 104 EAAHILIATPRNDAAARSGARETAEKVLSSVLEDPALFDQLARTRSDCRTSAENGGHLGQ 163 EAAHILIA PR++ AAR ARE AE +L++V E+PA+F +A S C TSA GG LGQ Sbjct: 121 EAAHILIAAPRDNQAARVAAREQAETILAAVKENPAVFADMASNHSACSTSAAEGGRLGQ 180 Query: 164 LTRGQTIEEFEVALARMDEGELAIVETRYGFHIVRLDRHAPGQVLPFELARERIADYLAT 223 ++RGQT+ EFE AL RM GE+AI ETRYGFH+VRLDR A GQ LPFELA+ERIA YLAT Sbjct: 181 ISRGQTVAEFEAALERMQPGEMAIAETRYGFHVVRLDRRAEGQTLPFELAKERIAGYLAT 240 Query: 224 SVQHRSLAQYVAVLAGRAEITGIALAGASSPLLQ 257 SV+HR+LAQY+++LAG+AEITGI+LA +PL+Q Sbjct: 241 SVEHRALAQYISILAGQAEITGISLAATDTPLVQ 274 >ref|YP_002288047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] ref|YP_004633844.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Oligotropha carboxidovorans OM5] gb|ACI92182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] gb|AEI04025.1| peptidyl-prolyl cis-trans isomerase domain protein [Oligotropha carboxidovorans OM4] gb|AEI07603.1| peptidyl-prolyl cis-trans isomerase domain protein [Oligotropha carboxidovorans OM5] Length = 274 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/274 (62%), Positives = 204/274 (74%), Gaps = 17/274 (6%) Query: 1 MDCSLTDSL-----------------FFFXVQNHPAEKPILAWQAAARALVVRELLLQEA 43 MDCS++++L VQNHPA+KPI AWQAAARALVVRELLLQEA Sbjct: 1 MDCSVSNALPKPKAISVNGVVIAREAIAQEVQNHPADKPIHAWQAAARALVVRELLLQEA 60 Query: 44 RRLEISAEPLRDAEGRSETPEEAAMRALIEREVVTPEPDDASCLRYYEQNQRRFRSGDLY 103 RL I EPL D +GR ET EEAAMRAL+EREV TPEPD+A+C R+YEQ+ +RFR+GDLY Sbjct: 61 ARLGIETEPLCDPDGRRETAEEAAMRALVEREVKTPEPDEATCRRFYEQHLQRFRTGDLY 120 Query: 104 EAAHILIATPRNDAAARSGARETAEKVLSSVLEDPALFDQLARTRSDCRTSAENGGHLGQ 163 E AHILIA R D AAR AR +AE +L++V DP +F +A S C TSA GG LGQ Sbjct: 121 EVAHILIAASRGDEAARLAARASAETILAAVKADPHVFADMASNHSACSTSAAEGGRLGQ 180 Query: 164 LTRGQTIEEFEVALARMDEGELAIVETRYGFHIVRLDRHAPGQVLPFELARERIADYLAT 223 +TRGQT+ EFE L RM GE+AI ETRYGFH+VR+DR A GQ LPFELA+ERIA YLA Sbjct: 181 ITRGQTVPEFEAVLERMQPGEIAIAETRYGFHVVRMDRRAEGQTLPFELAKERIAGYLAA 240 Query: 224 SVQHRSLAQYVAVLAGRAEITGIALAGASSPLLQ 257 SV+HR+LAQY+++LAG+AEITGIAL A +PL+Q Sbjct: 241 SVEHRALAQYISILAGQAEITGIALVAADTPLVQ 274 >ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ22744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] Length = 292 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 131/245 (53%), Positives = 165/245 (67%), Gaps = 2/245 (0%) Query: 14 VQNHPAEKPILAWQAAARALVVRELLLQEARRLEISAEPLRDAEGRSETPEEAAMRALIE 73 VQN P+ P W AAARALV+RELLLQEARRL I AEP D +GR ET ++A +R LIE Sbjct: 49 VQNFPSRNPGEGWLAAARALVIRELLLQEARRLNIVAEPKADVDGREETVDDALVRGLIE 108 Query: 74 REVVTPEPDDASCLRYYEQNQRRFRSGDLYEAAHILIATPRNDAAARSGARETAEKVLSS 133 REV P D+A+ R+YE N+RRF S LYEA HILI R+D A+ + ARE A + + Sbjct: 109 REVRVPVADEATSHRFYENNRRRFTSAALYEADHILIGARRDDDASYAAARERATSIAAV 168 Query: 134 VLEDPALFDQLARTRSDCRTSAENGGHLGQLTRGQTIEEFEVALARMDEGELA-IVETRY 192 + +P F +LAR S C SA GG LGQ+ G T EEFE AL + GE++ VETRY Sbjct: 169 LATEPDQFAELARAWSAC-PSATLGGSLGQIAPGDTTEEFEAALVSLAPGEISGPVETRY 227 Query: 193 GFHIVRLDRHAPGQVLPFELARERIADYLATSVQHRSLAQYVAVLAGRAEITGIALAGAS 252 G H++RL+R G LPFE RERI YL V+ ++ AQY+A+L GRA+I GI+L GA+ Sbjct: 228 GVHVIRLNRRIEGNTLPFEAVRERIEAYLDDHVRRQATAQYIALLVGRADIRGISLEGAN 287 Query: 253 SPLLQ 257 SPL+Q Sbjct: 288 SPLVQ 292 >ref|YP_001755258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] gb|ACB24575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] Length = 277 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 127/247 (51%), Positives = 169/247 (68%), Gaps = 3/247 (1%) Query: 4 SLTDSLFFFXVQNHPAEKPILAWQAAARALVVRELLLQEARRLEISAEPLRDAEGRSETP 63 +++ ++ VQNHPA P+ AW+AAA ALV+RE L QE +RL+I AEP DAEGR ET Sbjct: 23 TISRAVISREVQNHPAPTPVGAWKAAALALVLREALSQEVKRLDIRAEPAVDAEGRRETD 82 Query: 64 EEAAMRALIEREVVTPEPDDASCLRYYEQNQRRFRSGDLYEAAHILIATPRNDAAARSGA 123 EEA MRAL+ERE V PEP + C RY+ +N RFRS D++E +HIL + ++A++ + A Sbjct: 83 EEACMRALVEREAVVPEPTEEECRRYHARNLARFRSPDIFEVSHILFSARADEASSFALA 142 Query: 124 RETAEKVLSSVLEDPALFDQLARTRSDCRTSAENGGHLGQLTRGQTIEEFEVALARMDEG 183 R AE V++ + DP F +LAR S C S E GG LGQ+T+GQT EFE AL RM G Sbjct: 143 RLNAETVIAMLRTDPDTFAELARAHSAC-PSGELGGSLGQVTQGQTTPEFEDALRRMTPG 201 Query: 184 ELAI--VETRYGFHIVRLDRHAPGQVLPFELARERIADYLATSVQHRSLAQYVAVLAGRA 241 +++ VETRYGFH++RL RH G+ LPFE R IA YL+ +V+ R+ AQYVA L G+A Sbjct: 202 QVSTEPVETRYGFHVIRLSRHIDGRTLPFEAVRTCIAAYLSEAVRRRAEAQYVARLLGQA 261 Query: 242 EITGIAL 248 + GI + Sbjct: 262 RVEGIEI 268 >ref|YP_004677031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium sp. MC1] emb|CCB66465.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium sp. MC1] Length = 297 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 128/245 (52%), Positives = 165/245 (67%), Gaps = 2/245 (0%) Query: 14 VQNHPAEKPILAWQAAARALVVRELLLQEARRLEISAEPLRDAEGRSETPEEAAMRALIE 73 VQN PA P W+A RALV+RELLLQEARRLE+S EP D +GR ET E+A +RALI+ Sbjct: 54 VQNFPARNPGDGWRAVTRALVIRELLLQEARRLEVSVEPRADEDGRIETAEDALIRALID 113 Query: 74 REVVTPEPDDASCLRYYEQNQRRFRSGDLYEAAHILIATPRNDAAARSGARETAEKVLSS 133 REV P+ D+A+ R+YE N RF + LYEA HILIA R+D + ARE A + + Sbjct: 114 REVRVPKADEATLRRFYENNYCRFVTPALYEADHILIAARRDDLETFTAAREKAASLAAV 173 Query: 134 VLEDPALFDQLARTRSDCRTSAENGGHLGQLTRGQTIEEFEVALARMDEGELAI-VETRY 192 + +P F LAR SDC SA GG LGQ+ G T EFE ALA + G+++ VETRY Sbjct: 174 LATEPERFSVLARDFSDC-PSAALGGSLGQIGPGDTTAEFEAALAGLSLGQISSPVETRY 232 Query: 193 GFHIVRLDRHAPGQVLPFELARERIADYLATSVQHRSLAQYVAVLAGRAEITGIALAGAS 252 G HI+RL R G+ L F++ R+RI YL V+H+++ QY+A+L GRAE+ GIAL GA+ Sbjct: 233 GVHIIRLARRIEGRPLSFDVVRKRIEVYLEEHVRHQAITQYIALLIGRAEVRGIALEGAT 292 Query: 253 SPLLQ 257 SPL+Q Sbjct: 293 SPLVQ 297