BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0051.0006.p (175 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_487286.1| hypothetical protein RPB_3680 [Rhodopseudomonas... 192 2e-47 ref|NP_949142.1| hypothetical protein RPA3805 [Rhodopseudomonas ... 182 2e-44 ref|YP_001993299.1| hypothetical protein Rpal_4328 [Rhodopseudom... 180 8e-44 ref|YP_577852.1| hypothetical protein Nham_2610 [Nitrobacter ham... 179 2e-43 ref|YP_568917.1| hypothetical protein RPD_1780 [Rhodopseudomonas... 175 2e-42 >ref|YP_487286.1| hypothetical protein RPB_3680 [Rhodopseudomonas palustris HaA2] gb|ABD08375.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 175 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/166 (60%), Positives = 126/166 (75%), Gaps = 5/166 (3%) Query: 1 MSNNWRISSFNGALLAAYFIPVWSIIAFSIMVSPIHGLYERPSVSIAFYASDYLHLGKMA 60 M+ NWRISS NG LLAAYF+P W ++AF IMVSPIH LY+RP++S+A + D+ HL Sbjct: 2 MTTNWRISSVNGVLLAAYFVPTWLMVAFKIMVSPIHALYDRPNISVAIFLGDHFHLAATD 61 Query: 61 TVRLAWLLALARITVVAFFAVFLAMTAFSPLRKSSSGADEALAVALCLGSVLSFASMMMA 120 TVR AW+LALA++TV AFF VF+A+ +RK + G+DE LA+AL LGSV+SFASM+MA Sbjct: 62 TVRTAWMLALAKLTVAAFFIVFVALLTRPSIRK-TGGSDEPLAIALTLGSVISFASMIMA 120 Query: 121 SKVGEVEAMRMHASELLMLLGTAIVMLFETSPKRAVEAPVAEAGAP 166 S+VGE EAMR+HA+ELL+LLGTAIVML E R VE+ A P Sbjct: 121 SQVGEAEAMRLHATELLLLLGTAIVMLVE----RPVESVAKVAAQP 162 >ref|NP_949142.1| hypothetical protein RPA3805 [Rhodopseudomonas palustris CGA009] emb|CAE29246.1| hypothetical protein RPA3805 [Rhodopseudomonas palustris CGA009] Length = 175 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 1 MSNNWRISSFNGALLAAYFIPVWSIIAFSIMVSPIHGLYERPSVSIAFYASDYLHLGKMA 60 M +WRISS NG LLAAY P W I+A+ + V+PIH LY+RP++S+A + SD+LHL +A Sbjct: 1 MKTDWRISSVNGVLLAAYITPTWLIVAYRLFVTPIHALYDRPNISVAIFVSDHLHLSAVA 60 Query: 61 TVRLAWLLALARITVVAFFAVFLAMTAFSPLRKSSSGADEALAVALCLGSVLSFASMMMA 120 T+R+AWLLALA++TV F VF A+ +R S G +EALA AL LGSV+SFASM+MA Sbjct: 61 TIRMAWLLALAKLTVAGFLLVFSALLTRRSVRL-SGGCNEALAFALTLGSVISFASMVMA 119 Query: 121 SKVGEVEAMRMHASELLMLLGTAIVMLFETSPKRA 155 S+V E EAMR+HA+ELL+ LGTAI+ML E S + A Sbjct: 120 SQVAEPEAMRLHATELLLFLGTAILMLVEPSTQSA 154 >ref|YP_001993299.1| hypothetical protein Rpal_4328 [Rhodopseudomonas palustris TIE-1] gb|ACF02824.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 175 Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 89/149 (59%), Positives = 114/149 (76%), Gaps = 1/149 (0%) Query: 1 MSNNWRISSFNGALLAAYFIPVWSIIAFSIMVSPIHGLYERPSVSIAFYASDYLHLGKMA 60 M +WRISS NG LLAAY P W I+A+ + V+PIH LY+RP++S+A + SD+LHL MA Sbjct: 1 MKTDWRISSVNGVLLAAYITPTWLIVAYRLFVTPIHALYDRPNISVAIFISDHLHLSAMA 60 Query: 61 TVRLAWLLALARITVVAFFAVFLAMTAFSPLRKSSSGADEALAVALCLGSVLSFASMMMA 120 T+R+AWLLALA++TV F VF A+ +R S G +EALA AL LGSV+SFASM+MA Sbjct: 61 TIRMAWLLALAKLTVAGFLLVFSALLTRRSVRL-SGGCNEALAFALTLGSVISFASMVMA 119 Query: 121 SKVGEVEAMRMHASELLMLLGTAIVMLFE 149 S+V E EAMR+HA+ELL+ LGTAI+ML E Sbjct: 120 SQVAEPEAMRLHATELLLFLGTAILMLVE 148 >ref|YP_577852.1| hypothetical protein Nham_2610 [Nitrobacter hamburgensis X14] gb|ABE63392.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 176 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/161 (58%), Positives = 126/161 (78%), Gaps = 2/161 (1%) Query: 2 SNNWRISSFNGALLAAYFIPVWSIIAFSIMVSPIHGLYERPSVSIAFYASDYLHLGKMAT 61 +N+WRIS+ NGALLA YFIP W+I+AF I+VSP+HGLY+ P+VS+A + D+LH M Sbjct: 3 TNSWRISTINGALLALYFIPAWTIVAFKIVVSPVHGLYDLPNVSVALFLGDHLHFASMNL 62 Query: 62 VRLAWLLALARITVVAFFAVFLAMTAFSPLRKSSSGADEALAVALCLGSVLSFASMMMAS 121 VR AWLLALA++TVV FFAVFL MT + +RK + G DEALA+AL +GS+++F SM+MAS Sbjct: 63 VRFAWLLALAKMTVVVFFAVFLLMTTRASVRK-TGGCDEALAMALGIGSLITFGSMVMAS 121 Query: 122 KVGEVEAMRMHASELLMLLGTAIVMLFETSPKRAVEAPVAE 162 +VGE+ A+R+HA+ELL+LLG AI+M E +R E PV + Sbjct: 122 RVGEMAALRLHATELLLLLGGAILMAVEPPFQRKTE-PVRQ 161 >ref|YP_568917.1| hypothetical protein RPD_1780 [Rhodopseudomonas palustris BisB5] gb|ABE39016.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 175 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/149 (64%), Positives = 121/149 (81%), Gaps = 1/149 (0%) Query: 1 MSNNWRISSFNGALLAAYFIPVWSIIAFSIMVSPIHGLYERPSVSIAFYASDYLHLGKMA 60 M +WR+SS NG LAAYF+P W I+AF+IMVSPIH LY+RP++++A + SD+ HL A Sbjct: 2 MKTHWRMSSVNGVFLAAYFVPTWLIVAFNIMVSPIHALYDRPNIAVAIFVSDHFHLAATA 61 Query: 61 TVRLAWLLALARITVVAFFAVFLAMTAFSPLRKSSSGADEALAVALCLGSVLSFASMMMA 120 TVR AWLLALA++TV AFFAVF+A+ +RK + G DEAL +AL +GSV+SFASM+MA Sbjct: 62 TVRTAWLLALAKLTVAAFFAVFVALLTRPSIRK-TGGCDEALGIALTIGSVISFASMVMA 120 Query: 121 SKVGEVEAMRMHASELLMLLGTAIVMLFE 149 SKVGE EAMR+HA+ELL+LLGTAIVML E Sbjct: 121 SKVGEAEAMRLHATELLLLLGTAIVMLVE 149