BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0051.0005.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772491.1| hypothetical protein bll5851 [Bradyrhizobium ja... 225 6e-57 ref|YP_001206975.1| hypothetical protein BRADO5062 [Bradyrhizobi... 220 2e-55 ref|YP_001241400.1| hypothetical protein BBta_5534 [Bradyrhizobi... 217 1e-54 ref|YP_002361342.1| hypothetical protein Msil_1011 [Methylocella... 209 3e-52 ref|YP_001834262.1| hypothetical protein Bind_3213 [Beijerinckia... 203 2e-50 >ref|NP_772491.1| hypothetical protein bll5851 [Bradyrhizobium japonicum USDA 110] dbj|BAC51116.1| bll5851 [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 158/256 (61%), Gaps = 12/256 (4%) Query: 1 MTERTRVFVATPCYGGDLKMAYVLSALKLQAAATA-RGIDIQFHLIGNESLIVRARNELA 59 M+++ ++ VATPC+GG + Y S LQ A ++++ L ++LI RAR LA Sbjct: 1 MSDKMQLVVATPCFGGQVSSIYASSIFALQRAVHGMSNLELKVLLRDGDALITRARANLA 60 Query: 60 HQFLA-SGASHLLFIDADIGFEPESVFRLLDCGTDVSAAAYPLKHIDWAKVQRAAEAKRR 118 FL A+H LFIDADIGF+PE VFRL++CG DV A YP+K ++W K +RA EA R Sbjct: 61 AMFLDDPKATHFLFIDADIGFKPEQVFRLIECGADVVAGCYPIKRVNWDKAKRAVEAGRA 120 Query: 119 NLASSSLDYVVTWEGDQITARGDGFAKVRYAGTGFLMMKRSALVRLCDAHPE---LKYRA 175 ++ ++SLDYV+ E +GF +VRYAGTGFLM++R L +C HP L++ Sbjct: 121 DVPAASLDYVLEIEDPDRIVVVNGFTRVRYAGTGFLMIRRHVLEAMC-RHPNYAGLQFFR 179 Query: 176 NHKSNDLNTGDLVRADLDRVSLFECMIDKTTGEYLSEDYAFCRRWIDLGGEIWLDLRSEL 235 H + D + A +R +LFECMID TG YLSED+AFC+RW D+GGEIW D++S L Sbjct: 180 EH------SHDTLAASQNRFALFECMIDPATGTYLSEDFAFCKRWTDIGGEIWADIQSSL 233 Query: 236 THFGSYAFRGRFADQL 251 H G F G Q Sbjct: 234 DHVGPSVFHGDIGSQF 249 >ref|YP_001206975.1| hypothetical protein BRADO5062 [Bradyrhizobium sp. ORS 278] emb|CAL78758.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 267 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/255 (44%), Positives = 153/255 (60%), Gaps = 12/255 (4%) Query: 3 ERTRVFVATPCYGGDLKMAYVLSALKLQAAATA-RGIDIQFHLIGNESLIVRARNELAHQ 61 ER + +ATPC+GG + Y S LQ A A +D+ H+ ++LI RAR L Sbjct: 7 ERIHLVIATPCFGGQVSSIYASSIFALQRALRATSNVDLTVHMRDGDALITRARANLVTL 66 Query: 62 FLA-SGASHLLFIDADIGFEPESVFRLLDCGTDVSAAAYPLKHIDWAKVQRAAEAKRRNL 120 FL A+HLLF+DADIGF P+ VFRL++ G D+ A YP+K ++W K +RA R ++ Sbjct: 67 FLNDPTATHLLFVDADIGFTPKQVFRLIESGGDMVAGVYPVKKVNWTKARRAIHDNRMDV 126 Query: 121 ASSSLDYVVTWEGDQITARGDGFAKVRYAGTGFLMMKRSALVRLCDAHP---ELKYRANH 177 ++SLDYV+ E A +GF +VRYAGTGFLM++R + + AHP +L++ H Sbjct: 127 PAASLDYVLEIENPDHVAVVNGFTRVRYAGTGFLMIRRRVIEAMI-AHPAYAQLQFFREH 185 Query: 178 KSNDLNTGDLVRADLDRVSLFECMIDKTTGEYLSEDYAFCRRWIDLGGEIWLDLRSELTH 237 D + +R +LFEC+ID TG YLSED+AFC+RW DLGGEIW DL S L H Sbjct: 186 SQ------DALAGSPNRFALFECLIDPETGTYLSEDFAFCKRWTDLGGEIWADLDSRLDH 239 Query: 238 FGSYAFRGRFADQLA 252 G F G A Q A Sbjct: 240 VGPSVFHGNVASQFA 254 >ref|YP_001241400.1| hypothetical protein BBta_5534 [Bradyrhizobium sp. BTAi1] gb|ABQ37494.1| hypothetical protein BBta_5534 [Bradyrhizobium sp. BTAi1] Length = 268 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/255 (44%), Positives = 151/255 (59%), Gaps = 12/255 (4%) Query: 3 ERTRVFVATPCYGGDLKMAYVLSALKLQAAA-TARGIDIQFHLIGNESLIVRARNELAHQ 61 ER + +ATPC+GG + Y S LQ T +D+ H+ ++LI RAR L Sbjct: 7 ERIHLVIATPCFGGQVSSIYASSLFALQRELRTTSNVDLTVHMRDGDALITRARANLVTL 66 Query: 62 FLA-SGASHLLFIDADIGFEPESVFRLLDCGTDVSAAAYPLKHIDWAKVQRAAEAKRRNL 120 FL A+HLLF+DADIGF P VFRL++ G D+ A YP+K ++W K +RA R ++ Sbjct: 67 FLNDPTATHLLFVDADIGFTPRQVFRLIESGGDMVAGVYPIKKVNWTKARRAISDNRMDV 126 Query: 121 ASSSLDYVVTWEGDQITARGDGFAKVRYAGTGFLMMKRSALVRLCDAHP---ELKYRANH 177 +++LDYV+ + A +GF +VRYAGTGFLM++R A+ + AHP L++ H Sbjct: 127 PAAALDYVLEIDNPDHVAVVNGFTRVRYAGTGFLMIRRRAIEAMI-AHPGYAPLRFLREH 185 Query: 178 KSNDLNTGDLVRADLDRVSLFECMIDKTTGEYLSEDYAFCRRWIDLGGEIWLDLRSELTH 237 D + +R +LFECMI+ TG YLSED+AFCRRW DLGGEIW DL S L H Sbjct: 186 SQ------DALAGSPNRFALFECMIEPETGTYLSEDFAFCRRWTDLGGEIWADLDSRLDH 239 Query: 238 FGSYAFRGRFADQLA 252 G F G A Q A Sbjct: 240 VGPAVFYGNVASQFA 254 >ref|YP_002361342.1| hypothetical protein Msil_1011 [Methylocella silvestris BL2] gb|ACK49980.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 268 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/248 (46%), Positives = 149/248 (60%), Gaps = 12/248 (4%) Query: 2 TERTRVFVATPCYGGDLKMAYVLSALKLQAAATARGIDIQFHLIGNESLIVRARNELAHQ 61 ER VF+ATPC+GG + Y+ S L L A A G D L+G++SLI R+RN L Q Sbjct: 5 VERPLVFIATPCFGGLVSQHYMQSVLGLVQLAAAAGFDATLALLGHDSLITRSRNTLVSQ 64 Query: 62 FLA-SGASHLLFIDADIGFEPESVFRLLDCGTDVSAAAYPLKHIDWAK--VQRAAEAKRR 118 FL GA+HLLFIDADIGFEPE V +L+ D A YPLK IDW+ + RAA A+R Sbjct: 65 FLMMQGATHLLFIDADIGFEPEQVLHMLNFNQDFVAGVYPLKVIDWSNPAILRAA-ARRE 123 Query: 119 NLASSSLDYV-VTWEGDQITARGDGFAKVRYAGTGFLMMKRSALVRLCDAHPELKYRANH 177 ++ L YV G RG F Y G GF+++KR + R+ A+PE +Y H Sbjct: 124 GFETAPLLYVGAASAGSDREQRGR-FCTAIYCGGGFMLIKRQVVERMIAAYPETRYAGAH 182 Query: 178 KSNDLNTGDLVRADLDRVSLFECMIDKTTGEYLSEDYAFCRRWIDLGGEIWLDLRSELTH 237 ++ T A LF+C+ID+ TG Y+SED+AFC+RW D+GG+IWLD +LTH Sbjct: 183 AYSNAVTSAASYA------LFDCLIDRDTGAYVSEDFAFCQRWRDIGGKIWLDTEGKLTH 236 Query: 238 FGSYAFRG 245 GSY FRG Sbjct: 237 VGSYNFRG 244 >ref|YP_001834262.1| hypothetical protein Bind_3213 [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96773.1| conserved hypothetical protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 152/252 (60%), Gaps = 11/252 (4%) Query: 4 RTRVFVATPCYGGDLKMAYVLSALKLQAAATARGIDIQFHLIGNESLIVRARNELAHQFL 63 R +F+ATPC+GG + Y+ S L L G DI L+G++SLI R+RN L QFL Sbjct: 15 RPLIFLATPCFGGLVSQHYMQSVLSLVQFGGQAGFDITLALLGHDSLITRSRNTLIAQFL 74 Query: 64 A-SGASHLLFIDADIGFEPESVFRLLDCGTDVSAAAYPLKHIDWAK--VQRAAEAKRRNL 120 + A+HLLF+DADI F+PE VF +L D A YPLK IDW + ++R A + + Sbjct: 75 QHTEATHLLFVDADIAFDPEQVFHMLAFDQDFVAGIYPLKVIDWTQPAIKRVA-MREESF 133 Query: 121 ASSSLDYVVTWEGDQITARGDGFAKVRYAGTGFLMMKRSALVRLCDAHPELKYRANHKSN 180 +++L YV + E Q R FA Y G GF+++KR + RL +A+P+ +Y+ H + Sbjct: 134 ETAALHYVGSLETGQALERKGRFATGIYCGGGFMLLKRQVVTRLIEAYPQSRYKNVHAFS 193 Query: 181 DLNTGDLVRADLDRVSLFECMIDKTTGEYLSEDYAFCRRWIDLGGEIWLDLRSELTHFGS 240 + +A+ + +LFEC+IDK T Y+SED+ FC++W D+GG IWLD LTH GS Sbjct: 194 N------AKAE-NNYALFECLIDKETEAYVSEDFGFCQKWRDIGGRIWLDTEGRLTHIGS 246 Query: 241 YAFRGRFADQLA 252 Y F GR A + A Sbjct: 247 YQFSGRPAHRYA 258