BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0051.0001.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_998823.1| extracellular ligand-binding receptor [Verminep... 99 1e-18 ref|YP_002247679.1| branched chain amino acid ABC transporter su... 97 4e-18 ref|YP_998824.1| extracellular ligand-binding receptor [Verminep... 96 7e-18 ref|NP_946586.1| leucine-binding protein (LBP) [Rhodopseudomonas... 96 8e-18 ref|YP_001990443.1| extracellular ligand-binding receptor [Rhodo... 94 3e-17 >ref|YP_998823.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM59805.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 387 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 15/296 (5%) Query: 2 LEDDGYVTARTIQGVKKVIDVDKVFAMLGISGSGQSIAVMPVLEKSGIPTVIDVAPVKFL 61 +ED GY R + +K+++ DK+F M+G G+ Q++A MPV + + + + + Sbjct: 76 VEDSGYDPKRAVLAAQKLVNQDKIFIMIGHIGTAQNLAAMPVQFSKNVINFLPLTGAREM 135 Query: 62 WEPPRKNVFVVGQSYEEGIIHLVNFLADKNPGKKWGLITQDDDYGITVRDGFDSVVKAKK 121 +EP + + Y + I V L + +K I QDD++G+ V G ++ +K Sbjct: 136 YEPWHRLKYSSFVPYYDQIRLAVPRLIKEKNARKICTIYQDDEFGLEVMRGGEAALKTLG 195 Query: 122 LNVVYSGNYKKGQQDFSSDMLQLKDSGAEVFLAGGIIAENIAMTKELEKLNIKPVTGIFW 181 L YK+G DFSS + ++K +G ++ + G +I E I E K P Sbjct: 196 LEFTEKTTYKRGATDFSSQVAKMKSAGCDLVILGTVIRETIGTIGEARKTGFDPTFLGSG 255 Query: 182 PGRIEPVLKLMGPAGDRIYAVDYVE-PFAGTAG---KAFLEKAKPLVSEAEFKGINRYTM 237 + + KL G D +YA V+ P+ A + + K K +E + +++ Sbjct: 256 AAYTDLIHKLGGKPMDGLYAAMTVQHPYLDEASQPLRFWANKYKTRFNEDP----SVFSV 311 Query: 238 TGYAAARVLIAAIERCGKQPTWACTISELEKTKNVETGVMAPISFG-PGVRFSNQK 292 GY+ V I A ++ G Q T I+ + +T ++AP FG P V + QK Sbjct: 312 YGYSVVDVFIRAAQKAGPQLTTDSFIAAM------DTMLIAPDIFGNPEVSYGPQK 361 >ref|YP_002247679.1| branched chain amino acid ABC transporter substrate-binding protein [Coprothermobacter proteolyticus DSM 5265] gb|ACI18067.1| putative branched chain amino acid ABC transporter substrate-binding protein [Coprothermobacter proteolyticus DSM 5265] Length = 538 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 130/310 (41%), Gaps = 27/310 (8%) Query: 1 VLEDDGYVTARTIQGVKKVIDVDKVFAMLGISGSGQSIAVMPVLEKSGIPTVIDVAPVKF 60 ++ DD A T+ VKK ++ DKVFA++G G+ +AVM L + G+P V Sbjct: 224 IIADDQMNPALTVPAVKKFVEEDKVFAVVGGLGTPGCLAVMDYLNEKGVPFVYQGGGASA 283 Query: 61 LWEPPRKNVFVVGQSYEEGIIHLVNFLADKNPGKKWGLITQDDDYGITVRDGFDSVVKAK 120 PP+K VF V +Y V F K+ L+ Q+DD G G VK Sbjct: 284 FAYPPKKYVFAVQPNYMTEGQAFVKFARQNLNTSKFALLYQNDDAGKEGAQGVQEGVKKY 343 Query: 121 KLNVVYSGNYKKGQQDFSSDMLQLKDSGAEVFL----AGGIIAENIAMTKELEKLNIKPV 176 ++VYS ++ + DF+S + ++K+SGAEV A N T + L K Sbjct: 344 GGSLVYSSSFPGTETDFTSYLTRIKNSGAEVIFLYAPANTSAGANAVKTAKSLGLTQK-- 401 Query: 177 TGIFWPGRIEPVLKLMGPAGDRIYA---VDY-------VEPFAGTAGKAFLEKAKPLVSE 226 I P + + G A + +Y VD+ V+ F GK + PL Sbjct: 402 --IILPYSYAGITAMAGDAAEGVYITGWVDFSNLNDPGVQKFFEIWGK-YYPNDDPLTFS 458 Query: 227 AEFKGINRYTMTGYAAARVLIAAIERCGKQPTWACTISELEKTKNVETGVMAPISFGPGV 286 Y + G+ AA + + A+ R G+ PT + LE V IS+GP Sbjct: 459 --------YAVAGFVAAEIFVEALRRAGQYPTRDAIVWALETFNGWNGYVAKDISYGPNE 510 Query: 287 RFSNQKLQIM 296 R L M Sbjct: 511 RAGKYSLYFM 520 >ref|YP_998824.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM59806.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 387 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 142/308 (46%), Gaps = 23/308 (7%) Query: 2 LEDDGYVTARTIQGVKKVIDVDKVFAMLGISGSGQSIAVMPVLEKSGIPTVIDVAPVKFL 61 +ED GY R + +K+++ DK+F M+G G+ Q++A MPV + + + + + Sbjct: 76 VEDSGYDPKRAVLAAQKLVNQDKIFIMIGHIGTAQNLAAMPVQFSKNVINFLPLTGAREV 135 Query: 62 WEPPRKNVFVVGQSYEEGI-IHLVNFLADKNPGKKWGLITQDDDYGITVRDGFDSVVKAK 120 +EP + + SY + I + + +KN GK I QDD++G+ V G ++ +KA Sbjct: 136 YEPWHRLKYAFIVSYYDQIRLAAPRLIKEKNAGKIC-TIYQDDEFGLEVMRGGEAALKAM 194 Query: 121 KLNVVYSGNYKKGQQDFSSDMLQLKDSGAEVFLAGGIIAENIAMTKELEKLNIKPVTGIF 180 L YK+G DFSS + ++K +G ++ + G +I E I E K P Sbjct: 195 GLEFTEKTTYKRGATDFSSQVAKMKSAGCDLVILGTVIRETIGTIGEARKTGFSPAFLGT 254 Query: 181 WPGRIEPVLKLMGPAGDRIYAVDYVE-PFAGTAG---KAFLEKAKPLVSEAEFKGINRYT 236 + + KL G D +YA V+ P+ A + + K K +E + ++ Sbjct: 255 SAAYTDLIHKLGGKPMDGLYATMTVQHPYLDEASQPLRFWANKYKTRFNEDP----SVFS 310 Query: 237 MTGYAAARVLIAAIERCGKQPTWACTISELEKTKNVETGVMAP-------ISFGPGVRFS 289 + GY+ V + A + G + T I+ + +T ++AP S+GP R Sbjct: 311 VYGYSVVDVFVRAARKAGPRLTSDSFIAAM------DTMLIAPDIFGSAEASYGPQKRLG 364 Query: 290 NQKLQIMQ 297 + ++ Q Sbjct: 365 SSLARLSQ 372 >ref|NP_946586.1| leucine-binding protein (LBP) [Rhodopseudomonas palustris CGA009] emb|CAE26678.1| possible Leucine-Binding Protein (LBP) [Rhodopseudomonas palustris CGA009] Length = 401 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 18/294 (6%) Query: 1 VLEDDGYVTARTIQGVKKVIDVDKVFAMLGISGSGQSIAVMPVLEKSGIPTVIDVAPVKF 60 V EDDGY + + +K+I++DKVFA++ GS ++A MP+++ +G+ + + +F Sbjct: 80 VNEDDGYDPKKAVLITQKLIELDKVFAIVSAMGSATTLAPMPLVQSAGLLHLFPITAAEF 139 Query: 61 LWE-----PPRKNVFVVGQSYEEGIIHLVNFLADKNPGKKWGLITQDDDYGITVRDGFDS 115 ++ P + F + Y + + + ++ +K KK ++ QDD+ G D + Sbjct: 140 TFKMDPAKPEDRLKFNMFSPYYDTMRLGIKYVIEKTQPKKPCIVYQDDEMGKNFTDAYTD 199 Query: 116 VVKAKKLNVVYSGNYKKGQQDFSSDMLQLKDSGAEVFLAGGIIAENIAMTKELEKLNIKP 175 +KA + ++K+G DF+S + ++K G ++ G ++ E++ +T +KL KP Sbjct: 200 QLKAMNIPSATMVSFKRGATDFNSQVARMKADGCDMVALGSVVRESVGITTAAQKLGWKP 259 Query: 176 VTGIFWPGRIEPVLKLMGPAGDRIYAVDYVEPF-AGTAG---KAFLEKAKPLVSEAEFKG 231 + P + +L + IY V E F A TA K F+E K + G Sbjct: 260 TFVVSSPSYVPDFPQLGKETTEGIYGVGQTEIFYADTATGEVKKFVEDYKKMF------G 313 Query: 232 I--NRYTMTGYAAARVLIAAIERCGKQPTWACTISELEKTKNVETGV-MAPISF 282 I N+ + GY V ++ GK T ++ LE + + APISF Sbjct: 314 IDANQQSTAGYNGVMVFAHFAKKAGKALTTESLMTALESGETFDDIFGGAPISF 367 >ref|YP_001990443.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] gb|ACE99967.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 401 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 1 VLEDDGYVTARTIQGVKKVIDVDKVFAMLGISGSGQSIAVMPVLEKSGIPTVIDVAPVKF 60 V EDDGY + + +K+I++DKVFA++ GS ++A MP+++ +G+ + + +F Sbjct: 80 VNEDDGYDPKKAVLITQKLIELDKVFAIVSAMGSATTLAPMPLVQSAGLLHLFPITAAEF 139 Query: 61 LWE-----PPRKNVFVVGQSYEEGIIHLVNFLADKNPGKKWGLITQDDDYGITVRDGFDS 115 ++ P + F + Y + + + ++ + KK ++ QDD+ G D + Sbjct: 140 TFKMDPVKPEDRLKFNMFSPYYDTMRLGIKYVIENTKPKKPCIVYQDDEMGKNFTDAYTD 199 Query: 116 VVKAKKLNVVYSGNYKKGQQDFSSDMLQLKDSGAEVFLAGGIIAENIAMTKELEKLNIKP 175 +KA + ++K+G DF+S + ++K G ++ G ++ E++ +T +KL KP Sbjct: 200 QLKAMNIPSATMVSFKRGATDFNSQVARMKADGCDMVALGSVVRESVGITTAAQKLGWKP 259 Query: 176 VTGIFWPGRIEPVLKLMGPAGDRIYAVDYVEPF-AGTAG---KAFLEKAKPLVSEAEFKG 231 + P + +L + IY V E F A TA K F+E K + G Sbjct: 260 TFVVSSPSYVPDFPQLGKETTEGIYGVGQTEIFYADTATGEVKKFIEDYKKMF------G 313 Query: 232 I--NRYTMTGYAAARVLIAAIERCGKQPTWACTISELEKTKNVETGV-MAPISF 282 I N+ + GY V ++ GK T ++ LE + + APISF Sbjct: 314 IDANQQSTAGYNGVMVFAHFAKKAGKALTTDSLMTALESGETFDDIFGGAPISF 367