BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0065.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766838.1| amidase [Bradyrhizobium japonicum USDA 110] >gi... 572 e-161 ref|YP_004107509.1| amidase [Rhodopseudomonas palustris DX-1] >g... 501 e-140 ref|YP_484561.1| amidase [Rhodopseudomonas palustris HaA2] >gi|8... 496 e-138 ref|YP_568182.1| amidase [Rhodopseudomonas palustris BisB5] >gi|... 467 e-130 ref|ZP_01442946.1| amidase [Pelagibaca bermudensis HTCC2601] >gi... 390 e-106 >ref|NP_766838.1| amidase [Bradyrhizobium japonicum USDA 110] dbj|BAC45463.1| amidase [Bradyrhizobium japonicum USDA 110] Length = 504 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 275/297 (92%), Positives = 285/297 (95%) Query: 1 MKPTWGLVPYTGIMPIEIFVDHTGPMTATVEDNALLLEVIAGDDGYDPRIKAPKVEDYTK 60 MKPTWGLVPYTGIMPIEI+VDHTGPMTATV DNALLLEV+AGDDGYDPRIKAPKVE+YTK Sbjct: 208 MKPTWGLVPYTGIMPIEIYVDHTGPMTATVADNALLLEVLAGDDGYDPRIKAPKVEEYTK 267 Query: 61 ALGKGVKGMKIGILKEGFEQPTAEAAVNESVREAAKRFKDLGASVDTVSIPMHMVGPAIW 120 ALG+GVKGMKIGILKEGFEQP AEAAVNESVREAAKRFKDLGA+V+TVSIPMH++G AIW Sbjct: 268 ALGQGVKGMKIGILKEGFEQPVAEAAVNESVREAAKRFKDLGATVETVSIPMHLLGGAIW 327 Query: 121 TPIGTEGLTQTMMFGDGYGLSRPDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 180 TPIGTEGLTQTMMFGDGYGLSR DLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN Sbjct: 328 TPIGTEGLTQTMMFGDGYGLSRGDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 387 Query: 181 SFGPRFYGKALNISRRLTAAYDKAFKDYDLLLLPTTPMKAPALPAANASREDYVARALEM 240 +FGPRFYGKALNISRRLTAAYDKAF DYDLLLLPTTPMKA LP ASREDYVARALEM Sbjct: 388 NFGPRFYGKALNISRRLTAAYDKAFGDYDLLLLPTTPMKATKLPEPTASREDYVARALEM 447 Query: 241 ITNTAPFDITHHPAMSLPCGMIDGLPVGLMLVGRMFEESTIYRAAHAFEQAGDWKKM 297 I NTAPFDITHHPAMSLPCGM+DGLPVGLMLVGRMFEESTIYRAAHAFEQ GDWKKM Sbjct: 448 IGNTAPFDITHHPAMSLPCGMVDGLPVGLMLVGRMFEESTIYRAAHAFEQIGDWKKM 504 >ref|YP_004107509.1| amidase [Rhodopseudomonas palustris DX-1] gb|ADU42776.1| Amidase [Rhodopseudomonas palustris DX-1] Length = 504 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 232/297 (78%), Positives = 264/297 (88%) Query: 1 MKPTWGLVPYTGIMPIEIFVDHTGPMTATVEDNALLLEVIAGDDGYDPRIKAPKVEDYTK 60 MKPTWGLVPYTGIMPIEI+VDHTGPMTA VEDNALLLEVIAGDDGYDPRI+AP V +YTK Sbjct: 208 MKPTWGLVPYTGIMPIEIYVDHTGPMTANVEDNALLLEVIAGDDGYDPRIRAPIVHEYTK 267 Query: 61 ALGKGVKGMKIGILKEGFEQPTAEAAVNESVREAAKRFKDLGASVDTVSIPMHMVGPAIW 120 ALG+G+KGMKIGI++EGFEQP AE AVNESVREAAKR LGA+V+ +SIP H + A+W Sbjct: 268 ALGQGIKGMKIGIVREGFEQPGAEPAVNESVREAAKRLASLGATVEEISIPAHNLAGAVW 327 Query: 121 TPIGTEGLTQTMMFGDGYGLSRPDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 180 PIGTEG+TQTMM GDGYGLSRPDLYST+LM HRGWR QADSLSETTK+ ++LGTYINN Sbjct: 328 MPIGTEGMTQTMMVGDGYGLSRPDLYSTTLMKAHRGWRGQADSLSETTKMMLLLGTYINN 387 Query: 181 SFGPRFYGKALNISRRLTAAYDKAFKDYDLLLLPTTPMKAPALPAANASREDYVARALEM 240 +FGPR+YGKA+NISRR+TAAYD A ++DLLL+PTTPMKA LPA NA RE+ + RA EM Sbjct: 388 TFGPRYYGKAVNISRRITAAYDHALANFDLLLMPTTPMKATPLPAPNAPREEVIGRAFEM 447 Query: 241 ITNTAPFDITHHPAMSLPCGMIDGLPVGLMLVGRMFEESTIYRAAHAFEQAGDWKKM 297 I+NTAPFDITHHPAMS+PCGM DGLPVGLMLVG+ F+E TIYRAAHAF+Q+GDWK M Sbjct: 448 ISNTAPFDITHHPAMSIPCGMADGLPVGLMLVGKHFDEPTIYRAAHAFQQSGDWKTM 504 >ref|YP_484561.1| amidase [Rhodopseudomonas palustris HaA2] gb|ABD05650.1| Amidase [Rhodopseudomonas palustris HaA2] Length = 504 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/297 (78%), Positives = 260/297 (87%) Query: 1 MKPTWGLVPYTGIMPIEIFVDHTGPMTATVEDNALLLEVIAGDDGYDPRIKAPKVEDYTK 60 MKPTWGLVPYTGIMPIEIFVDHTGPMTA+V DNALLLEV+AGDDGYDPRI+AP V DYTK Sbjct: 208 MKPTWGLVPYTGIMPIEIFVDHTGPMTASVADNALLLEVLAGDDGYDPRIRAPVVHDYTK 267 Query: 61 ALGKGVKGMKIGILKEGFEQPTAEAAVNESVREAAKRFKDLGASVDTVSIPMHMVGPAIW 120 ALG GVKGMKIGI++EGFEQ AE AVNESVREAAKR LGA+V+ +SIP H + A+W Sbjct: 268 ALGGGVKGMKIGIVREGFEQAGAEPAVNESVREAAKRLASLGATVEEISIPAHNLAAAVW 327 Query: 121 TPIGTEGLTQTMMFGDGYGLSRPDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 180 PIGTEG+TQTMMFGDGYGLSRPDLYST+LM HRGWR QADSLSETTK+ ++ GTYINN Sbjct: 328 MPIGTEGMTQTMMFGDGYGLSRPDLYSTALMKAHRGWREQADSLSETTKMMLLFGTYINN 387 Query: 181 SFGPRFYGKALNISRRLTAAYDKAFKDYDLLLLPTTPMKAPALPAANASREDYVARALEM 240 +FGPR+YGKA NISRR+TAAYD A +DLLL+PTTPMKA LP ASRE+ + RA EM Sbjct: 388 TFGPRYYGKAQNISRRVTAAYDAALAKFDLLLMPTTPMKATPLPPPGASREEVIGRAFEM 447 Query: 241 ITNTAPFDITHHPAMSLPCGMIDGLPVGLMLVGRMFEESTIYRAAHAFEQAGDWKKM 297 I+NTAPFDITHHPAMSLPCGM+DGLPVGLML+G+ F+E TIYRAAHAFEQ+GDWK M Sbjct: 448 ISNTAPFDITHHPAMSLPCGMVDGLPVGLMLIGKHFDEPTIYRAAHAFEQSGDWKTM 504 >ref|YP_568182.1| amidase [Rhodopseudomonas palustris BisB5] gb|ABE38281.1| Amidase [Rhodopseudomonas palustris BisB5] Length = 504 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/297 (76%), Positives = 259/297 (87%) Query: 1 MKPTWGLVPYTGIMPIEIFVDHTGPMTATVEDNALLLEVIAGDDGYDPRIKAPKVEDYTK 60 MKPTWGLVPYTGIMPIE+FVDHTGPMTA V DNALLLEV+AGDDGYDPRI+APK+ DYTK Sbjct: 208 MKPTWGLVPYTGIMPIEVFVDHTGPMTANVADNALLLEVLAGDDGYDPRIRAPKLHDYTK 267 Query: 61 ALGKGVKGMKIGILKEGFEQPTAEAAVNESVREAAKRFKDLGASVDTVSIPMHMVGPAIW 120 ALG G+KGMKIGI++EGFEQ AE VNESVR AAKR LGA+V+ +SIP H + A+W Sbjct: 268 ALGGGIKGMKIGIVREGFEQAGAEPGVNESVRGAAKRLAGLGATVEEISIPAHNLAGAVW 327 Query: 121 TPIGTEGLTQTMMFGDGYGLSRPDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 180 PIGTEG+TQTMMFGDGYGLSRPDLYST+LM HRGWR QADSLSETTK+ ++ GTYINN Sbjct: 328 MPIGTEGMTQTMMFGDGYGLSRPDLYSTALMKAHRGWRGQADSLSETTKMMLLFGTYINN 387 Query: 181 SFGPRFYGKALNISRRLTAAYDKAFKDYDLLLLPTTPMKAPALPAANASREDYVARALEM 240 +FGPR+YGKA NISRR+ AAYD+A +DLLL+PTTPMKA LP+ ASRE+ + RA EM Sbjct: 388 TFGPRYYGKAQNISRRIGAAYDQALASFDLLLMPTTPMKATPLPSPGASREEIIGRAFEM 447 Query: 241 ITNTAPFDITHHPAMSLPCGMIDGLPVGLMLVGRMFEESTIYRAAHAFEQAGDWKKM 297 I+NTAPFDITHHPAMS+PCGM+DGLPVGLMLVG+ F+E TIYRAAHAFEQ+GDWK M Sbjct: 448 ISNTAPFDITHHPAMSIPCGMVDGLPVGLMLVGKHFDEPTIYRAAHAFEQSGDWKTM 504 >ref|ZP_01442946.1| amidase [Pelagibaca bermudensis HTCC2601] gb|EAU46833.1| amidase [Roseovarius sp. HTCC2601] Length = 504 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/294 (61%), Positives = 225/294 (76%) Query: 1 MKPTWGLVPYTGIMPIEIFVDHTGPMTATVEDNALLLEVIAGDDGYDPRIKAPKVEDYTK 60 MKPT GLVPYTGI+PIEI +DH GP+T++V DNAL+LEV+AG DGYD R V DYT+ Sbjct: 208 MKPTHGLVPYTGIVPIEITIDHAGPITSSVADNALMLEVLAGPDGYDSRQIDVSVSDYTE 267 Query: 61 ALGKGVKGMKIGILKEGFEQPTAEAAVNESVREAAKRFKDLGASVDTVSIPMHMVGPAIW 120 ALGK VKGMK+ +LKEGF P +E V+E VR AAK+ ++LG V+ VSIPMH+ G IW Sbjct: 268 ALGKPVKGMKVALLKEGFGHPQSETEVDEKVRAAAKKLEELGVIVEEVSIPMHLDGLDIW 327 Query: 121 TPIGTEGLTQTMMFGDGYGLSRPDLYSTSLMDFHRGWRRQADSLSETTKLFMMLGTYINN 180 TPIG +GLTQTMM GDGYG SRPDLY TS MDFHRGWR +AD LSET KL M+ + ++ Sbjct: 328 TPIGLQGLTQTMMLGDGYGTSRPDLYVTSFMDFHRGWRERADELSETLKLGMLFAQFADD 387 Query: 181 SFGPRFYGKALNISRRLTAAYDKAFKDYDLLLLPTTPMKAPALPAANASREDYVARALEM 240 +G RFYGKA NI + L AAYD DYD +L+PT P+ A +P +ASRE+ V RA EM Sbjct: 388 QYGKRFYGKAFNIVKTLRAAYDAVLADYDAILMPTVPIIATPIPGPDASREEIVQRAFEM 447 Query: 241 ITNTAPFDITHHPAMSLPCGMIDGLPVGLMLVGRMFEESTIYRAAHAFEQAGDW 294 + NTAPFDITHHPA+S+PCG + LPVG+MLVG+M++E+T+Y AFE++GDW Sbjct: 448 LPNTAPFDITHHPALSVPCGKVGDLPVGMMLVGKMWDEATLYTLGDAFEKSGDW 501