BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0064.p         (212 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766838.1| amidase [Bradyrhizobium japonicum USDA 110] >gi...   316   1e-84
ref|YP_004107509.1| amidase [Rhodopseudomonas palustris DX-1] >g...   299   2e-79
ref|YP_484561.1| amidase [Rhodopseudomonas palustris HaA2] >gi|8...   289   2e-76
ref|YP_568182.1| amidase [Rhodopseudomonas palustris BisB5] >gi|...   288   5e-76
ref|ZP_05073172.1| amidase [Rhodobacterales bacterium HTCC2083] ...   223   1e-56

>ref|NP_766838.1| amidase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45463.1| amidase [Bradyrhizobium japonicum USDA 110]
          Length = 504

 Score =  316 bits (810), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 146/164 (89%), Positives = 157/164 (95%)

Query: 29  VTVVLPTPTQLRAVAEQCGLSLTDEDVASFRGLMQGSIDAYNVIAAMPDELPKVKYPRTP 88
           +TVVLPTP QLR+VAEQCGLSLTD+DVASFRGLMQGSI+AYN++AAMPDE+P+VKYPRTP
Sbjct: 1   MTVVLPTPAQLRSVAEQCGLSLTDDDVASFRGLMQGSIEAYNLVAAMPDEVPEVKYPRTP 60

Query: 89  GYRPSAEENPRNAWYYKSTVKGAASGKLKGKTVALKDNIMLAGVPMTNGSSTLEGYIPDF 148
           GYRPSAEENPRNAWY K+TVKGAA GKLKGKTVALKDNIMLAGVPMTNGSSTLEGY+PDF
Sbjct: 61  GYRPSAEENPRNAWYRKATVKGAAGGKLKGKTVALKDNIMLAGVPMTNGSSTLEGYVPDF 120

Query: 149 DATIVTRMLDAGAEIAGKTHCEHFCLSGGSHTNSYGAVHNPHKM 192
           DATIVTRMLDAGAEI GK HCEHFCLSGGSHT S+G VHNPHKM
Sbjct: 121 DATIVTRMLDAGAEIKGKVHCEHFCLSGGSHTGSFGPVHNPHKM 164


>ref|YP_004107509.1| amidase [Rhodopseudomonas palustris DX-1]
 gb|ADU42776.1| Amidase [Rhodopseudomonas palustris DX-1]
          Length = 504

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 150/166 (90%)

Query: 29  VTVVLPTPTQLRAVAEQCGLSLTDEDVASFRGLMQGSIDAYNVIAAMPDELPKVKYPRTP 88
           + V LPTPTQL  VA+QCGLSLTDED+ SFRGLMQ SIDAYNV+AA+PDE+P VKYPRTP
Sbjct: 1   MAVSLPTPTQLLEVADQCGLSLTDEDIVSFRGLMQPSIDAYNVVAALPDEVPLVKYPRTP 60

Query: 89  GYRPSAEENPRNAWYYKSTVKGAASGKLKGKTVALKDNIMLAGVPMTNGSSTLEGYIPDF 148
           GY P AEENPRNAWY KS+VKGAASGKLKGKTVALKDNIMLAGVPM NGSSTLEGY+PDF
Sbjct: 61  GYTPGAEENPRNAWYRKSSVKGAASGKLKGKTVALKDNIMLAGVPMMNGSSTLEGYVPDF 120

Query: 149 DATIVTRMLDAGAEIAGKTHCEHFCLSGGSHTNSYGAVHNPHKMGY 194
           DAT+VTR+LDAG EI GKTHCEHFC+SGGSHT S G VHNPHKMGY
Sbjct: 121 DATVVTRILDAGGEILGKTHCEHFCMSGGSHTGSNGPVHNPHKMGY 166


>ref|YP_484561.1| amidase [Rhodopseudomonas palustris HaA2]
 gb|ABD05650.1| Amidase [Rhodopseudomonas palustris HaA2]
          Length = 504

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 147/166 (88%)

Query: 29  VTVVLPTPTQLRAVAEQCGLSLTDEDVASFRGLMQGSIDAYNVIAAMPDELPKVKYPRTP 88
           + V LPTPTQL  VA+QCGLSLTDEDV SFR LMQ S+DAYNV+AA+PDE+P VKYPRTP
Sbjct: 1   MAVSLPTPTQLLDVADQCGLSLTDEDVMSFRALMQPSVDAYNVVAALPDEVPLVKYPRTP 60

Query: 89  GYRPSAEENPRNAWYYKSTVKGAASGKLKGKTVALKDNIMLAGVPMTNGSSTLEGYIPDF 148
           GY P ++ENPRNAWY KS+VKGAASGKL GKT+ALKDNIMLAGVPM NGSSTLEG++PDF
Sbjct: 61  GYSPDSDENPRNAWYRKSSVKGAASGKLTGKTIALKDNIMLAGVPMMNGSSTLEGFVPDF 120

Query: 149 DATIVTRMLDAGAEIAGKTHCEHFCLSGGSHTNSYGAVHNPHKMGY 194
           DAT+V R+LDAG EI GKTHCEHFC+SGGSHT S G VHNPHKMGY
Sbjct: 121 DATVVMRILDAGGEILGKTHCEHFCMSGGSHTGSNGPVHNPHKMGY 166


>ref|YP_568182.1| amidase [Rhodopseudomonas palustris BisB5]
 gb|ABE38281.1| Amidase [Rhodopseudomonas palustris BisB5]
          Length = 504

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 148/166 (89%)

Query: 29  VTVVLPTPTQLRAVAEQCGLSLTDEDVASFRGLMQGSIDAYNVIAAMPDELPKVKYPRTP 88
           + V LPTP QL  VAEQCGLSLTDEDVASFR LMQ S++AYNV+AA+PDE+P VKYPRTP
Sbjct: 1   MAVSLPTPMQLLDVAEQCGLSLTDEDVASFRALMQPSVEAYNVVAALPDEVPLVKYPRTP 60

Query: 89  GYRPSAEENPRNAWYYKSTVKGAASGKLKGKTVALKDNIMLAGVPMTNGSSTLEGYIPDF 148
           GY+P  E+NPRNAWY K++VKGAA+GKLKGKT+ALKDNIMLAGVPM NGSSTLEG++PDF
Sbjct: 61  GYQPGPEDNPRNAWYRKASVKGAAAGKLKGKTIALKDNIMLAGVPMMNGSSTLEGFVPDF 120

Query: 149 DATIVTRMLDAGAEIAGKTHCEHFCLSGGSHTNSYGAVHNPHKMGY 194
           DAT+VTR+LDAG EI GK HCEHFC+SGGSHT S G VHNPHKMGY
Sbjct: 121 DATVVTRILDAGGEILGKVHCEHFCMSGGSHTGSNGPVHNPHKMGY 166


>ref|ZP_05073172.1| amidase [Rhodobacterales bacterium HTCC2083]
 gb|EDZ40832.1| amidase [Rhodobacteraceae bacterium HTCC2083]
          Length = 790

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 139/188 (73%), Gaps = 2/188 (1%)

Query: 7   QRAAAPCVEGSNPKIKSYQESAVTVVLPTPTQLRAVAEQCGLSLTDEDVASFRGLMQGSI 66
           Q+  AP    S P + +   +A+T+  PT  Q+R +AE+ G+SL+D+D++ +  +++  +
Sbjct: 268 QQPGAPAPTRSQPSVSTV--TAMTIKRPTLAQMRTMAERFGMSLSDQDLSEYTEIIEPYM 325

Query: 67  DAYNVIAAMPDELPKVKYPRTPGYRPSAEENPRNAWYYKSTVKGAASGKLKGKTVALKDN 126
            AY+ + AMPD LP+V+YPR+PG  P   ENP NAWY K+ V+GA  GKL+GK +ALKD 
Sbjct: 326 QAYDRLDAMPDNLPEVRYPRSPGRFPDPSENPLNAWYVKTEVRGAPDGKLRGKRIALKDT 385

Query: 127 IMLAGVPMTNGSSTLEGYIPDFDATIVTRMLDAGAEIAGKTHCEHFCLSGGSHTNSYGAV 186
           I LAGVP+ NGSS +EGY P+ DATIVTRMLDAGA IAGK HCE+FCLSGGSHTN+ G +
Sbjct: 386 ICLAGVPLMNGSSIMEGYTPEIDATIVTRMLDAGAIIAGKAHCENFCLSGGSHTNAKGPI 445

Query: 187 HNPHKMGY 194
           HNP+K GY
Sbjct: 446 HNPYKRGY 453