BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0063.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium jap...   175   2e-42
ref|YP_001243336.1| ABC transporter substrate-binding protein [B...   166   2e-39
ref|YP_001202775.1| ABC transporter substrate-binding protein [B...   157   5e-37
ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomona...   155   3e-36
ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas p...   152   2e-35

>ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45464.1| bll0199 [Bradyrhizobium japonicum USDA 110]
          Length = 406

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 99/135 (73%)

Query: 39  AGLAATTLRFAGCFDETALLGIGADKTENLYCASGYFPSVGSREGDDFRERYRAMFGAFA 98
           AGLA +TLR AG  DET LLGIGAD TENL+CASGYF  + SR  D+F   Y+AMFG  A
Sbjct: 272 AGLATSTLRLAGAMDETVLLGIGADNTENLFCASGYFNCMASRANDEFLSGYQAMFGPHA 331

Query: 99  PPVGSCSESAYEGFCLLEAAAKRAGTLDMRPLLAAADNLVYRGPRGPVTVRSGHARMPMY 158
           PPVGS  +S YEG   LE+ A RAG+L  RPLL AA N VY   RGPVT+R G A MPMY
Sbjct: 332 PPVGSVGQSNYEGLRFLESVANRAGSLAFRPLLKAARNTVYSAGRGPVTIRDGRAEMPMY 391

Query: 159 LAEADGLDFRVIKPI 173
           LAEADGLDF++IK +
Sbjct: 392 LAEADGLDFKLIKTL 406


>ref|YP_001243336.1| ABC transporter substrate-binding protein [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ39430.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
           family [Bradyrhizobium sp. BTAi1]
          Length = 393

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 97/133 (72%)

Query: 39  AGLAATTLRFAGCFDETALLGIGADKTENLYCASGYFPSVGSREGDDFRERYRAMFGAFA 98
           +GLAATTLR AG  DET LLGIGAD TENLY ASGYF  +GSR  D+F   Y AMFG  A
Sbjct: 259 SGLAATTLRLAGAVDETVLLGIGADNTENLYSASGYFNCIGSRANDEFMSLYTAMFGVDA 318

Query: 99  PPVGSCSESAYEGFCLLEAAAKRAGTLDMRPLLAAADNLVYRGPRGPVTVRSGHARMPMY 158
           PPVGS  +S YEG   L+AAA+RAG+L + PL AA  N+VY G RG V +R G A M M+
Sbjct: 319 PPVGSVGQSNYEGLRFLKAAAERAGSLSLHPLAAAGRNIVYSGARGEVAIRQGRAGMAMH 378

Query: 159 LAEADGLDFRVIK 171
           LA ADGLDFR+I+
Sbjct: 379 LAAADGLDFRIIR 391


>ref|YP_001202775.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS
           278]
 emb|CAL74535.1| Putative ABC transporter, substrate binding protein [Bradyrhizobium
           sp. ORS 278]
          Length = 393

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 100/133 (75%)

Query: 39  AGLAATTLRFAGCFDETALLGIGADKTENLYCASGYFPSVGSREGDDFRERYRAMFGAFA 98
           +GLAATTLR AG  DET LLGIGAD  ENLY ASGYF  +GS+  DDF   Y AMFGA A
Sbjct: 259 SGLAATTLRLAGAVDETVLLGIGADNAENLYSASGYFNCIGSKANDDFMSLYTAMFGANA 318

Query: 99  PPVGSCSESAYEGFCLLEAAAKRAGTLDMRPLLAAADNLVYRGPRGPVTVRSGHARMPMY 158
           PPVGS  +S YEG   L+AAA+RAG+L + PL AA+ N+VY GPRG VT+R G A M M+
Sbjct: 319 PPVGSVGQSNYEGLRFLKAAAERAGSLSLHPLAAASRNIVYSGPRGDVTLRHGRAAMAMH 378

Query: 159 LAEADGLDFRVIK 171
           LA ADGLDFR+I+
Sbjct: 379 LAAADGLDFRIIR 391


>ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1]
 gb|ADU42775.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1]
          Length = 394

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 92/133 (69%)

Query: 39  AGLAATTLRFAGCFDETALLGIGADKTENLYCASGYFPSVGSREGDDFRERYRAMFGAFA 98
           AGL+   LR AG  DET LLGIGAD TENL+CASGYF        D FR+ YR MFG  A
Sbjct: 260 AGLSRHILRLAGAMDETVLLGIGADNTENLFCASGYFGCYDCAANDAFRDSYRRMFGPTA 319

Query: 99  PPVGSCSESAYEGFCLLEAAAKRAGTLDMRPLLAAADNLVYRGPRGPVTVRSGHARMPMY 158
           PP+GS  +S YEG   L   A +A TL  RPLL AA N+VYRG RG VTVR G ARM M+
Sbjct: 320 PPIGSVGQSNYEGLRFLATIADKAQTLAARPLLQAARNVVYRGARGEVTVRDGRARMTMH 379

Query: 159 LAEADGLDFRVIK 171
           LAEADGLDF++++
Sbjct: 380 LAEADGLDFKLLR 392


>ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2]
 gb|ABD05649.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2]
          Length = 395

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 91/132 (68%)

Query: 40  GLAATTLRFAGCFDETALLGIGADKTENLYCASGYFPSVGSREGDDFRERYRAMFGAFAP 99
           GLA  TLR AG  DET LLGIGAD TENL+CASGYF    S   D FR      FG  AP
Sbjct: 262 GLAGGTLRLAGAMDETVLLGIGADNTENLFCASGYFGCHDSSANDQFRAACLRAFGPTAP 321

Query: 100 PVGSCSESAYEGFCLLEAAAKRAGTLDMRPLLAAADNLVYRGPRGPVTVRSGHARMPMYL 159
           P+GS  +S YEG   LEA A +A TL  RPLL+AA N+VY G RG VT+R G ARM ++L
Sbjct: 322 PIGSVGQSNYEGLRFLEAVADKAQTLAARPLLSAAKNVVYNGARGAVTIRDGRARMTIHL 381

Query: 160 AEADGLDFRVIK 171
           AEADGLDF++I+
Sbjct: 382 AEADGLDFKLIR 393