BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0060.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japon...   162   2e-38
ref|YP_002546734.1| transcriptional regulatory protein [Agrobact...   150   5e-35
ref|ZP_01549812.1| transcriptional regulatory protein [Stappia a...   141   3e-32
gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas put...   128   3e-28
ref|YP_366731.1| LuxR family transcriptional regulator [Burkhold...   126   9e-28

>ref|NP_773054.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51679.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 99/132 (75%), Gaps = 1/132 (0%)

Query: 1   MDRRDLTRTEFYNDFLQRDALEWGINIYMFDQRDRDLGDFRIWRRHGKANFDDREKVLLD 60
           + RRD+ RTEFYNDFL RD L  GIN+Y+FD  DRDLGDFRIWR  G+ +F+ RE  LL 
Sbjct: 103 LSRRDMIRTEFYNDFLARDGLHHGINMYVFDG-DRDLGDFRIWRAAGRPDFESREIDLLT 161

Query: 61  VMEPFIRSALLRGRTHSDGLTAREREVTELISRGCTDRDIARVLGISFGTVRTHISRVLE 120
            +EPF+R A+LRG    + LTARE +V  L++RGCTDRDI+R+L I F TVRTHI+  + 
Sbjct: 162 GLEPFLRGAMLRGMHRYEDLTARESDVANLVARGCTDRDISRLLNIGFATVRTHINNAMR 221

Query: 121 KLGCANRAELAA 132
           K  CANRAELAA
Sbjct: 222 KRCCANRAELAA 233


>ref|YP_002546734.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
 gb|ACM31270.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
          Length = 247

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 5   DLTRTEFYNDFLQRDALEWGINIYMFDQRDRDLGDFRIWRRHGKANFDDREKVLLDVMEP 64
           +L RTEFYNDFL+RD L  GIN+++F+  DRDLGDFR+WR     +F +REK+LLD + P
Sbjct: 108 ELIRTEFYNDFLKRDGLHHGINVFLFEG-DRDLGDFRLWRSAKSPDFSEREKMLLDTISP 166

Query: 65  FIRSALLRGRTHSDGLTAREREVTELISRGCTDRDIARVLGISFGTVRTHISRVLEKLGC 124
           F++ A+  G    + LT RER++  L++RGC DR+I  +L I F TVRTH+++ +EK GC
Sbjct: 167 FLKKAMANGMERFENLTPRERQIAFLVARGCRDREICDMLNIGFSTVRTHLNKAMEKKGC 226

Query: 125 ANRAELAA 132
           +NRAELAA
Sbjct: 227 SNRAELAA 234


>ref|ZP_01549812.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gb|EAV41727.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 241

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 2/137 (1%)

Query: 1   MDRRDLTRTEFYNDFLQRDALEWGINIYMFDQRDRDLGDFRIWRRHGKANFDDREKVLLD 60
           + + DL +TEFYNDFL RD +  G+N++M     R+L D RIWR   + +F +RE  LL 
Sbjct: 103 ISKPDLRKTEFYNDFLARDGMHHGVNLFMLSS-TRELADLRIWRHRNRPDFGEREIDLLT 161

Query: 61  VMEPFIRSAL-LRGRTHSDGLTAREREVTELISRGCTDRDIARVLGISFGTVRTHISRVL 119
           ++ PF+R AL L      D LT RER+V  LI+RGC D+DIARVLGI F TVRTH+   +
Sbjct: 162 IIGPFMRKALSLAPEVSLDMLTERERDVALLIARGCFDKDIARVLGIGFATVRTHLGNCM 221

Query: 120 EKLGCANRAELAANFTK 136
            KLGCANR ELAA  +K
Sbjct: 222 TKLGCANRTELAALVSK 238


>gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida]
          Length = 233

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 87/131 (66%), Gaps = 1/131 (0%)

Query: 1   MDRRDLTRTEFYNDFLQRDALEWGINIYMFDQRDRDLGDFRIWRRHGKANFDDREKVLLD 60
           + R  + ++EFYNDFLQ   +E G+N++ FD  DRD+GD R+WR  G   F +RE+ LL 
Sbjct: 101 VPRSAMLKSEFYNDFLQPADMEHGLNVFFFDG-DRDIGDLRVWRSKGSKPFSEREERLLS 159

Query: 61  VMEPFIRSALLRGRTHSDGLTAREREVTELISRGCTDRDIARVLGISFGTVRTHISRVLE 120
            ++P+++ A     T S  L+ RE EV EL+++G +D+++AR L I+F TVRTH+   + 
Sbjct: 160 TLQPYVQKAFSPAPTLSQRLSLREAEVAELVAQGASDKEVARRLDIAFSTVRTHLKNAMA 219

Query: 121 KLGCANRAELA 131
           KL C NR +LA
Sbjct: 220 KLECQNRTQLA 230


>ref|YP_366731.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gb|ABB06087.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 237

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 1   MDRRDLTRTEFYNDFLQRDALEWGINIYMFDQRDRDLGDFRIWRRHGKANFDDREKVLLD 60
           ++RR+L +TEFYNDFL RD +  GIN+Y FD     +GD RIWR  G+ +F  R+K+LL+
Sbjct: 104 VNRRELEQTEFYNDFLCRDGMHHGINVYAFDGATH-VGDLRIWRAKGRPDFTGRDKLLLN 162

Query: 61  VMEPFIRSALLRGRTHSDGLTAREREVTELISRGCTDRDIARVLGISFGTVRTHISRVLE 120
            +EPF R ALLR R    GLT RE +V  L++ G TD+D+AR LGI   TVRTH+ RV+ 
Sbjct: 163 GIEPFFRRALLRRRHACAGLTERESDVARLVAAGYTDKDVARTLGIGVPTVRTHLRRVMA 222

Query: 121 KLGCANRAELAA 132
           K G ANRA LAA
Sbjct: 223 KKGVANRASLAA 234