BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0055.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001899004.1| LysR family transcriptional regulator [Ralst... 475 e-132 ref|YP_002981431.1| LysR family transcriptional regulator [Ralst... 470 e-130 ref|ZP_07676739.1| SDS degradation transcriptional activation pr... 466 e-129 ref|YP_296976.1| LysR family transcriptional regulator [Ralstoni... 367 1e-99 ref|YP_348013.1| LysR family transcriptional regulator [Pseudomo... 266 2e-69 >ref|YP_001899004.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD26572.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 301 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 253/301 (84%), Positives = 272/301 (90%) Query: 1 MDLHRLSHVVALADTLHFARAAEAVHRSQPAFSRSIQAIESDLGIRLFDRDIGDVRPTPA 60 MDL RLSHVV LADTLHFARAA+AVH SQPAFSRSIQAIE DLGIRLFDR+ GDVRPTPA Sbjct: 1 MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPA 60 Query: 61 GEFVIERARKLLFEARCLQRDVDLYRDSQLGDAAFGVGPLLTATLMPRALVALRRQHPQV 120 GEFVIERAR+LLFEARCLQRDVDLYRDSQLGD AFGVGPLLTATLMP+AL LR+QHPQV Sbjct: 61 GEFVIERARRLLFEARCLQRDVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQV 120 Query: 121 ALRMEVGNSVQLLESLRTENIEFFAADVSDMPRDAALDIQLIGGQPGNLYVRAGHPLAGR 180 ALRMEVGN VQLLESLR+E+IEFFAADV DMP+DAALDIQLIGGQP +LYVRAGHPLAGR Sbjct: 121 ALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQLIGGQPPHLYVRAGHPLAGR 180 Query: 181 EHTPQEVWAYGLAAPTLLSRAAVELAALLGLPEGQQATIALECDNYGLLKTVALTTDTVL 240 HT +EVW YG+A P LLS + VELA LLGLP GQ+A+IALECDNYG+LKTVALTTDTVL Sbjct: 181 THTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL 240 Query: 241 AATDAAVWEELESGALVRLVVQGWLSPPSSTGIVRLRGRTSSPAAKAAIAAIVRAAGEIN 300 ATDAAV ELE+G LVRL V GWLSPPS TGIVRL GRT+SPAA+AAIAAIVRAA +IN Sbjct: 241 GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDIN 300 Query: 301 V 301 V Sbjct: 301 V 301 >ref|YP_002981431.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS62759.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 301 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 251/301 (83%), Positives = 271/301 (90%) Query: 1 MDLHRLSHVVALADTLHFARAAEAVHRSQPAFSRSIQAIESDLGIRLFDRDIGDVRPTPA 60 MDL RLSHVVALADTLHFA AA+AVH SQPAFSRSIQAIE DLGIRLFDR+ GDVRPTPA Sbjct: 1 MDLRRLSHVVALADTLHFAHAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPA 60 Query: 61 GEFVIERARKLLFEARCLQRDVDLYRDSQLGDAAFGVGPLLTATLMPRALVALRRQHPQV 120 GEFVIERAR+LLFEARCL+RDVDLYRDSQLGD AFGVGPLLTATLMP+AL LR+QHPQV Sbjct: 61 GEFVIERARRLLFEARCLKRDVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQV 120 Query: 121 ALRMEVGNSVQLLESLRTENIEFFAADVSDMPRDAALDIQLIGGQPGNLYVRAGHPLAGR 180 ALRMEVGN VQLLESLR+E+IEFFAADV DMP+DAALDIQLIGGQP +LYVRAGHPLAGR Sbjct: 121 ALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQLIGGQPPHLYVRAGHPLAGR 180 Query: 181 EHTPQEVWAYGLAAPTLLSRAAVELAALLGLPEGQQATIALECDNYGLLKTVALTTDTVL 240 HT +EVW YG+A P LLS + VELA LLGLP GQ+A+ ALECDNYG+LKTVALTTDTVL Sbjct: 181 THTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASSALECDNYGVLKTVALTTDTVL 240 Query: 241 AATDAAVWEELESGALVRLVVQGWLSPPSSTGIVRLRGRTSSPAAKAAIAAIVRAAGEIN 300 ATDAAV ELE+G LVRL V GWLSPPS TGIVRL GRT+SPAA+AAIAAIVRAA +IN Sbjct: 241 GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDIN 300 Query: 301 V 301 V Sbjct: 301 V 301 >ref|ZP_07676739.1| SDS degradation transcriptional activation protein [Ralstonia sp. 5_7_47FAA] gb|EFP64742.1| SDS degradation transcriptional activation protein [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/272 (85%), Positives = 248/272 (91%) Query: 1 MDLHRLSHVVALADTLHFARAAEAVHRSQPAFSRSIQAIESDLGIRLFDRDIGDVRPTPA 60 MDL RLSHVVALADTLHFA AA+AVH SQPAFSRSIQAIE DLGIRLFDR+ GDVRPTPA Sbjct: 1 MDLRRLSHVVALADTLHFAHAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPA 60 Query: 61 GEFVIERARKLLFEARCLQRDVDLYRDSQLGDAAFGVGPLLTATLMPRALVALRRQHPQV 120 GEFVIERAR+LLFEARCLQRDVDLYRDSQLGD AFGVGPLLTATLMP+AL LR+QHPQV Sbjct: 61 GEFVIERARRLLFEARCLQRDVDLYRDSQLGDTAFGVGPLLTATLMPQALQDLRQQHPQV 120 Query: 121 ALRMEVGNSVQLLESLRTENIEFFAADVSDMPRDAALDIQLIGGQPGNLYVRAGHPLAGR 180 ALRMEVGN VQLLESLR+ENIEFFAADV DMP+DAALDIQLIGGQP +LYVRAGHPLAGR Sbjct: 121 ALRMEVGNWVQLLESLRSENIEFFAADVRDMPKDAALDIQLIGGQPPHLYVRAGHPLAGR 180 Query: 181 EHTPQEVWAYGLAAPTLLSRAAVELAALLGLPEGQQATIALECDNYGLLKTVALTTDTVL 240 HT +EVW YG+A P LLS + VELA LLGLP GQ+A+IALECDNYG+LKTVALTTDTVL Sbjct: 181 THTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL 240 Query: 241 AATDAAVWEELESGALVRLVVQGWLSPPSSTG 272 ATDAAV EELESG LVRL V+GWLSPPS+TG Sbjct: 241 GATDAAVREELESGTLVRLAVKGWLSPPSTTG 272 >ref|YP_296976.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ62132.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 308 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 189/300 (63%), Positives = 223/300 (74%) Query: 1 MDLHRLSHVVALADTLHFARAAEAVHRSQPAFSRSIQAIESDLGIRLFDRDIGDVRPTPA 60 MDL RLSHVVALADTLHFARAAE VH SQPAFSRSIQA+E+DLG+RLF+RD+GD+RPTPA Sbjct: 1 MDLRRLSHVVALADTLHFARAAEQVHLSQPAFSRSIQAVENDLGVRLFERDVGDIRPTPA 60 Query: 61 GEFVIERARKLLFEARCLQRDVDLYRDSQLGDAAFGVGPLLTATLMPRALVALRRQHPQV 120 GEFV+ERAR+LLFEARC+QRDVDLY D+QLGD AFGVGP ATLMPR L LRR HPQV Sbjct: 61 GEFVLERARRLLFEARCMQRDVDLYLDNQLGDTAFGVGPFPAATLMPRVLTELRRLHPQV 120 Query: 121 ALRMEVGNSVQLLESLRTENIEFFAADVSDMPRDAALDIQLIGGQPGNLYVRAGHPLAGR 180 ALR+E N V LLE LR E+IEFF ADV D+P D ALDI+ + Q +VRAGHPLAG Sbjct: 121 ALRVEESNWVLLLERLRAEDIEFFVADVRDLPDDDALDIRPLPAQAARFFVRAGHPLAGT 180 Query: 181 EHTPQEVWAYGLAAPTLLSRAAVELAALLGLPEGQQATIALECDNYGLLKTVALTTDTVL 240 T + WAYG+AA L LGLP GQ+A +ALECD++ +++ V L+TD VL Sbjct: 181 SCTIKAAWAYGVAAVKAPRAVTAALTKALGLPAGQEAVLALECDDFAVIRAVTLSTDMVL 240 Query: 241 AATDAAVWEELESGALVRLVVQGWLSPPSSTGIVRLRGRTSSPAAKAAIAAIVRAAGEIN 300 AT+AAV ++ SG LV L V+G + + GIV LR RT SP A A+ I R AGEI+ Sbjct: 241 GATEAAVEAQVASGELVPLDVEGLPTLHAGMGIVSLRNRTPSPMAMKAMRCIERVAGEIH 300 >ref|YP_348013.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA74024.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 307 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/302 (50%), Positives = 191/302 (63%), Gaps = 2/302 (0%) Query: 1 MDLHRLSHVVALADTLHFARAAEAVHRSQPAFSRSIQAIESDLGIRLFDRDIGDVRPTPA 60 MDL RLSH++ALAD HF RAAE VH SQPA SRSIQA+ES+ G RLFDRD GDVRPTPA Sbjct: 1 MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPA 60 Query: 61 GEFVIERARKLLFEARCLQRDVDLYRDSQLGDAAFGVGPLLTATLMPRALVALRRQHPQV 120 G F+IERAR+LLF+AR L+RD+ LY D QLG AFGVGP A LM + + LR HP V Sbjct: 61 GVFLIERARRLLFDARSLERDMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAV 120 Query: 121 ALRMEVGNSVQLLES-LRTENIEFFAADVSDMPRDAALDIQLIGGQPGNLYVRAGHPLAG 179 LR+EV N+ Q+LE+ LR E IEFF AD+ + ++ L I+ +G +VR HPLAG Sbjct: 121 TLRVEV-NNWQILEARLRAEGIEFFVADIRNFTAESDLLIRSLGQVSAGFFVRPEHPLAG 179 Query: 180 REHTPQEVWAYGLAAPTLLSRAAVELAALLGLPEGQQATIALECDNYGLLKTVALTTDTV 239 R+ E+ YG+A L +E LG+ Q I LECD+ LLKTVA +TDT+ Sbjct: 180 RKVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTI 239 Query: 240 LAATDAAVWEELESGALVRLVVQGWLSPPSSTGIVRLRGRTSSPAAKAAIAAIVRAAGEI 299 L AV E++ G L+ L V S G+V L GR+ SP A I A+V + Sbjct: 240 LGVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSV 299 Query: 300 NV 301 +V Sbjct: 300 HV 301