BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0048.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_296813.1| small multidrug resistance protein [Ralstonia e...   147   6e-34
ref|YP_002976462.1| small multidrug resistance protein [Rhizobiu...   137   5e-31
ref|YP_004154009.1| small multidrug resistance protein [Variovor...   136   9e-31
ref|ZP_02883386.1| small multidrug resistance protein [Burkholde...   124   3e-27
ref|YP_004794285.1| small multidrug resistance protein [Burkhold...   119   1e-25

>ref|YP_296813.1| small multidrug resistance protein [Ralstonia eutropha JMP134]
 gb|AAZ61969.1| Small multidrug resistance protein [Ralstonia eutropha JMP134]
          Length = 108

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 89/106 (83%)

Query: 1   MTWIILVSAGVLEIGFALSMKWSVGFTRLTPSLFAAAAGLSSVFLLSLALRALPVGTGYA 60
           M+WI+L  AG+LE+ FA  MKWS GF+RL PSLFAA  GLSS+ LL++ALRALPVGT YA
Sbjct: 1   MSWILLACAGLLEVAFAFGMKWSAGFSRLWPSLFAALTGLSSIVLLTMALRALPVGTAYA 60

Query: 61  VWTGIGAAGTAIFGMALLGDSASPARVLCIVFIVGGVIGLKLVSAN 106
           VWTGIGAAGTA+ GMALLG+ ASPAR+ C+  I+ GVIGLKLVSA+
Sbjct: 61  VWTGIGAAGTALLGMALLGEPASPARIGCVALILCGVIGLKLVSAD 106


>ref|YP_002976462.1| small multidrug resistance protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gb|ACS56923.1| small multidrug resistance protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 130

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 83/106 (78%)

Query: 1   MTWIILVSAGVLEIGFALSMKWSVGFTRLTPSLFAAAAGLSSVFLLSLALRALPVGTGYA 60
           M W +L  AG+LEIGFA  MK S+GFTRL P+L     GLSSVFLLS++LR LPVGTGYA
Sbjct: 25  MAWALLGIAGILEIGFAFFMKSSLGFTRLIPTLLTVVTGLSSVFLLSMSLRTLPVGTGYA 84

Query: 61  VWTGIGAAGTAIFGMALLGDSASPARVLCIVFIVGGVIGLKLVSAN 106
           VWTGIGAAGTAI GM  LGD+ASP R+ CI  I+ GVIGL+LVS +
Sbjct: 85  VWTGIGAAGTAILGMVALGDAASPMRLFCIALILAGVIGLRLVSGS 130


>ref|YP_004154009.1| small multidrug resistance protein [Variovorax paradoxus EPS]
 gb|ADU35898.1| small multidrug resistance protein [Variovorax paradoxus EPS]
          Length = 106

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 86/106 (81%)

Query: 1   MTWIILVSAGVLEIGFALSMKWSVGFTRLTPSLFAAAAGLSSVFLLSLALRALPVGTGYA 60
           M W +L  AG+LEI FA +MK S GFTRL P+LF   AGLSSV LL+L++R LP+GTGYA
Sbjct: 1   MAWTLLGIAGLLEIVFAFAMKSSEGFTRLVPALFTVGAGLSSVVLLALSMRTLPMGTGYA 60

Query: 61  VWTGIGAAGTAIFGMALLGDSASPARVLCIVFIVGGVIGLKLVSAN 106
           VWTGIGAAGTAI GMA+LGDSA+P R+LCI  I+ GVIGLKLV+ +
Sbjct: 61  VWTGIGAAGTAIVGMAVLGDSAAPLRLLCIALILAGVIGLKLVTID 106


>ref|ZP_02883386.1| small multidrug resistance protein [Burkholderia graminis C4D1M]
 gb|EDT10818.1| small multidrug resistance protein [Burkholderia graminis C4D1M]
          Length = 103

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 82/101 (81%)

Query: 1   MTWIILVSAGVLEIGFALSMKWSVGFTRLTPSLFAAAAGLSSVFLLSLALRALPVGTGYA 60
           M W++L  AG+LEI FA +MK SVGFTRLTP L   A GLSSV LLS+ALR +PVGTGYA
Sbjct: 1   MAWLLLGLAGLLEIAFAFAMKASVGFTRLTPGLLTVATGLSSVVLLSVALRTVPVGTGYA 60

Query: 61  VWTGIGAAGTAIFGMALLGDSASPARVLCIVFIVGGVIGLK 101
           VWTGIGAAGTAI G+ALLGDSA+P RV  I+ I+ GVIGLK
Sbjct: 61  VWTGIGAAGTAILGIALLGDSAAPLRVFFILLILSGVIGLK 101


>ref|YP_004794285.1| small multidrug resistance protein [Burkholderia sp. JV3]
 gb|AEM53059.1| small multidrug resistance protein [Burkholderia sp. JV3]
          Length = 106

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 79/106 (74%)

Query: 1   MTWIILVSAGVLEIGFALSMKWSVGFTRLTPSLFAAAAGLSSVFLLSLALRALPVGTGYA 60
           M WI L+ AG+ EIGFAL MK+S GF++  P++    + L S++L+S A++++PVGT YA
Sbjct: 1   MPWIYLLLAGLFEIGFALGMKYSEGFSKPLPTVATVVSALISLYLMSQAMKSIPVGTAYA 60

Query: 61  VWTGIGAAGTAIFGMALLGDSASPARVLCIVFIVGGVIGLKLVSAN 106
           +WTGIGA G A+ G+ L  DSASPAR+ C+  IV GVIGLKLVS N
Sbjct: 61  IWTGIGAMGVAVLGIYLFNDSASPARLACVGLIVAGVIGLKLVSPN 106