BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0047.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004154007.1| GntR family transcriptional regulator [Vario... 667 0.0 ref|YP_002973875.1| GntR family transcriptional regulator [Rhizo... 652 0.0 ref|ZP_02883384.1| transcriptional regulator, GntR family with a... 610 e-172 gb|EFV82759.1| GntR family transcriptional regulator [Achromobac... 561 e-157 gb|EGP45417.1| GntR family regulatory protein 37 [Achromobacter ... 555 e-156 >ref|YP_004154007.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35896.1| transcriptional regulator, GntR family with aminotransferase domain [Variovorax paradoxus EPS] Length = 474 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/475 (70%), Positives = 383/475 (80%), Gaps = 8/475 (1%) Query: 3 AAKLQKFQPLDPAAAAPLYQQIYDRVRDAITNGVLKPGDRIPSARALANELGLARGTIEA 62 A K PLDP A P Y+QIY+R+R AI +G+LKPGDRIPSARAL ELGLARGTI+ Sbjct: 4 AGKPTSISPLDPTAVEPYYRQIYERLRSAIASGLLKPGDRIPSARALTKELGLARGTIDT 63 Query: 63 AYSLLAAEGYIEARRQAGTIVSPVLDPQGPIARSAALPTPRAD----AVSFRPESILPFQ 118 AYSLL AEGYI+AR QAGTIV+P L P+ P+A +P+P D ++ FRP SILPFQ Sbjct: 64 AYSLLTAEGYIQARGQAGTIVTPGLKPRTPVA----MPSPVIDTGTSSIGFRPYSILPFQ 119 Query: 119 MGLPALDAFPRKIWARLGARSVRAMQPFDMIHPPVCGLASLRMEIVKYLQIARGISCSPS 178 MGLPALD FPRKIWARLGAR RAMQP DM HP V G +LR EI YLQ++RGI C+ S Sbjct: 120 MGLPALDEFPRKIWARLGARCARAMQPSDMTHPSVYGQPALRAEIAAYLQVSRGIHCAAS 179 Query: 179 QVFLTSGYRQSVELIGYALLKAGDGVWLEDPGYPPTREILKYMNIDGVSVPVDEEGIIVS 238 QVF+TSGYR S+ELIG ALLKAGD VWLEDPGYPPTRE+L M+I V VPVD +G++V+ Sbjct: 180 QVFVTSGYRHSIELIGLALLKAGDRVWLEDPGYPPTRELLAQMHIATVPVPVDADGMVVA 239 Query: 239 DATKLAPRARAAVVTPAHQSPLCMSLSLPRRLALLDWAARSKAWIVEDDYDGEYRYVSRP 298 + + APRAR AVVTPAHQSPL +SLSL RRLALLDWA R+ AWIVEDDYDGEYRYVSRP Sbjct: 240 EGVRAAPRARMAVVTPAHQSPLGVSLSLQRRLALLDWAGRNNAWIVEDDYDGEYRYVSRP 299 Query: 299 LPALKSLDRDGRVLYAGTFSKVLFPGIRLAYLVVPLVQVERFTQVIESLSAGSPGLTQTI 358 LPALKSLDRDGRVLYAGTFSKVLFP +RLAYLVVP QVERF Q+I++ + GSP LTQ+I Sbjct: 300 LPALKSLDRDGRVLYAGTFSKVLFPSLRLAYLVVPQAQVERFEQIIQTFAGGSPELTQSI 359 Query: 359 LAAFLSGGHFARHIQRMRKLYAVRREATAAGLESVLGKHVRIDRQPGGMHLILRLRGDRS 418 + AF+ GHFARHIQRMRKLYA RREAT AGLE VLGKHV+ID PGGMHLILRL G +S Sbjct: 360 VTAFIKEGHFARHIQRMRKLYAERREATKAGLEKVLGKHVKIDALPGGMHLILRLAGRQS 419 Query: 419 DRRLVASMRAGGLYAEALTDWTRGRHGVSALLLNFTNIDSQRTAENLGRRILNSM 473 DR+L+ MRA GL+AEAL++W + G SALL+NFTNIDS+ TAE LG+RIL M Sbjct: 420 DRKLMLRMRADGLFAEALSEWQQIGKGPSALLVNFTNIDSRATAEKLGKRILALM 474 >ref|YP_002973875.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54336.1| transcriptional regulator, GntR family with aminotransferase domain [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 473 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/473 (69%), Positives = 374/473 (79%) Query: 1 MPAAKLQKFQPLDPAAAAPLYQQIYDRVRDAITNGVLKPGDRIPSARALANELGLARGTI 60 M AK F PLDP A P Y+QIYDR R AI +G+LKPGDRIPSARAL ELGLARGTI Sbjct: 1 MTVAKSNDFPPLDPNAGVPFYRQIYDRFRAAIASGLLKPGDRIPSARALTKELGLARGTI 60 Query: 61 EAAYSLLAAEGYIEARRQAGTIVSPVLDPQGPIARSAALPTPRADAVSFRPESILPFQMG 120 E+AYSLLAAEGYIE+ QAGT+V+P L P+ A A VSFRP+SILPFQMG Sbjct: 61 ESAYSLLAAEGYIESHGQAGTVVTPGLSTLTPVPVPALQQISNAAEVSFRPDSILPFQMG 120 Query: 121 LPALDAFPRKIWARLGARSVRAMQPFDMIHPPVCGLASLRMEIVKYLQIARGISCSPSQV 180 LPALDAFPRKIWARLGA VRAMQP DM+HPP+ GL +LR EI YLQ++RGI CSPSQV Sbjct: 121 LPALDAFPRKIWARLGAGCVRAMQPSDMVHPPIYGLPALRTEIATYLQVSRGIGCSPSQV 180 Query: 181 FLTSGYRQSVELIGYALLKAGDGVWLEDPGYPPTREILKYMNIDGVSVPVDEEGIIVSDA 240 F+TSGYR ++ELI LLKAGD VWLEDPGYPPTREI ++M I V V VD++G+++SD Sbjct: 181 FITSGYRHTIELIADTLLKAGDHVWLEDPGYPPTREIFRHMQITTVPVRVDQDGMVISDG 240 Query: 241 TKLAPRARAAVVTPAHQSPLCMSLSLPRRLALLDWAARSKAWIVEDDYDGEYRYVSRPLP 300 K A A AAVVTPAHQSPL MSL LPRRLALLDWAA+SK+WI+EDDYDGEYRYVSRPLP Sbjct: 241 LKAAHGAVAAVVTPAHQSPLGMSLILPRRLALLDWAAKSKSWIIEDDYDGEYRYVSRPLP 300 Query: 301 ALKSLDRDGRVLYAGTFSKVLFPGIRLAYLVVPLVQVERFTQVIESLSAGSPGLTQTILA 360 ALKSLDR+GRVLY+GTFSKVLFPG+RLAYLVVP VERF + ++L+ GSP LTQ I+ Sbjct: 301 ALKSLDRNGRVLYSGTFSKVLFPGLRLAYLVVPEDLVERFEHISQTLAGGSPELTQAIVT 360 Query: 361 AFLSGGHFARHIQRMRKLYAVRREATAAGLESVLGKHVRIDRQPGGMHLILRLRGDRSDR 420 AF+ GHFARHIQRMRKLYA RR+ATA GLE+VLGKH+ I QPGGMHLIL+L+ SDR Sbjct: 361 AFIKEGHFARHIQRMRKLYAQRRKATAIGLETVLGKHMSIASQPGGMHLILQLKNQHSDR 420 Query: 421 RLVASMRAGGLYAEALTDWTRGRHGVSALLLNFTNIDSQRTAENLGRRILNSM 473 L A MR GLYAEAL DWT +ALL+NFTNI SQ AE+L +RIL M Sbjct: 421 LLSARMRESGLYAEALADWTMLSEAPAALLVNFTNIGSQSVAEHLAKRILQLM 473 >ref|ZP_02883384.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia graminis C4D1M] gb|EDT10816.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia graminis C4D1M] Length = 473 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 310/473 (65%), Positives = 368/473 (77%) Query: 1 MPAAKLQKFQPLDPAAAAPLYQQIYDRVRDAITNGVLKPGDRIPSARALANELGLARGTI 60 M K PLDP + PLY+Q+Y+R I +G LKPGDRIPSARAL +LGLARGT+ Sbjct: 1 MVKLKASIVSPLDPTSTIPLYRQVYERFVAVIADGTLKPGDRIPSARALMTDLGLARGTV 60 Query: 61 EAAYSLLAAEGYIEARRQAGTIVSPVLDPQGPIARSAALPTPRADAVSFRPESILPFQMG 120 +AY LLAAEGY+ A+ QAGTIV+P L + P T +A SFRP+SILP QMG Sbjct: 61 NSAYELLAAEGYVVAQGQAGTIVTPGLRARVPKREVQPKLTASLEAPSFRPDSILPLQMG 120 Query: 121 LPALDAFPRKIWARLGARSVRAMQPFDMIHPPVCGLASLRMEIVKYLQIARGISCSPSQV 180 LPALDAFPRKIWARLGA +RAMQ FDM+HPPVCGL LR+ I YLQ++RGI C+P+QV Sbjct: 121 LPALDAFPRKIWARLGANRIRAMQTFDMVHPPVCGLGELRVAIAAYLQVSRGIMCAPTQV 180 Query: 181 FLTSGYRQSVELIGYALLKAGDGVWLEDPGYPPTREILKYMNIDGVSVPVDEEGIIVSDA 240 F+TSGYR S+ELI ALL AGD VW E+PGYPPTR+++ +++ GV +PVD EGI V+ Sbjct: 181 FVTSGYRHSIELISRALLNAGDQVWYENPGYPPTRQLMGMLSLKGVPIPVDNEGIDVACG 240 Query: 241 TKLAPRARAAVVTPAHQSPLCMSLSLPRRLALLDWAARSKAWIVEDDYDGEYRYVSRPLP 300 +LAPRARAA+VTPAHQSPLC++LSLPRR+ALL+WAA++K W++EDDYDGEYRYVSRPLP Sbjct: 241 IELAPRARAAIVTPAHQSPLCVTLSLPRRIALLEWAAQNKGWVIEDDYDGEYRYVSRPLP 300 Query: 301 ALKSLDRDGRVLYAGTFSKVLFPGIRLAYLVVPLVQVERFTQVIESLSAGSPGLTQTILA 360 ALKSLD GRVLYAGTFSKVL P +RLAYLVVP ERF QV+ +L G+ L Q + Sbjct: 301 ALKSLDAKGRVLYAGTFSKVLMPSLRLAYLVVPDALTERFEQVVHTLGTGTSHLVQATVT 360 Query: 361 AFLSGGHFARHIQRMRKLYAVRREATAAGLESVLGKHVRIDRQPGGMHLILRLRGDRSDR 420 +F+ GHFARHIQRMR+LYA RR+AT AGLES LG +V ID QPGGMHLILRLRG RSDR Sbjct: 361 SFMREGHFARHIQRMRRLYAERRDATVAGLESELGDYVDIDAQPGGMHLILRLRGRRSDR 420 Query: 421 RLVASMRAGGLYAEALTDWTRGRHGVSALLLNFTNIDSQRTAENLGRRILNSM 473 RLVASM GLYAEAL+DW GR SALL+ FTN+DS+ TA LG+RIL+ M Sbjct: 421 RLVASMSENGLYAEALSDWGEGRKAGSALLIAFTNVDSEATAAQLGKRILSLM 473 >gb|EFV82759.1| GntR family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 470 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 289/455 (63%), Positives = 339/455 (74%), Gaps = 1/455 (0%) Query: 19 PLYQQIYDRVRDAITNGVLKPGDRIPSARALANELGLARGTIEAAYSLLAAEGYIEARRQ 78 PLY+Q+Y+R R AIT G LKPGDRIPSARALA +LG+ARGTIE AYSLL AEGY++ R Q Sbjct: 17 PLYRQVYERFRGAITQGTLKPGDRIPSARALAKDLGVARGTIEMAYSLLHAEGYVQPRGQ 76 Query: 79 AGTIVSPVLDPQGPIARSAALPTPRADAVSFRPESILPFQMGLPALDAFPRKIWARLGAR 138 AGT+V+P L Q S P D PE LPFQMGLPALDAFPRKIWARLGAR Sbjct: 77 AGTVVTPGLQAQPAARPSPPPARPDPDTWRQPPEP-LPFQMGLPALDAFPRKIWARLGAR 135 Query: 139 SVRAMQPFDMIHPPVCGLASLRMEIVKYLQIARGISCSPSQVFLTSGYRQSVELIGYALL 198 +RA Q D+ +PP GL +LR I +LQ+ARGI C+P QVF+TSGYR+S+ L+ ALL Sbjct: 136 HLRATQAADLSYPPADGLPALRTAIAAHLQVARGIHCTPDQVFITSGYRESLNLVIQALL 195 Query: 199 KAGDGVWLEDPGYPPTREILKYMNIDGVSVPVDEEGIIVSDATKLAPRARAAVVTPAHQS 258 + GD VW+EDPGYPPTRE+LK+ + V VD EG+IVS AP+ARAA+VTPAHQS Sbjct: 196 QPGDQVWVEDPGYPPTRELLKHSGLTFAPVEVDSEGVIVSQGIAQAPQARAAIVTPAHQS 255 Query: 259 PLCMSLSLPRRLALLDWAARSKAWIVEDDYDGEYRYVSRPLPALKSLDRDGRVLYAGTFS 318 PL ++LSL RR ALLDWA R + WIVEDDYDGEYRYVSRPLPALKSLDR GRVLYAGTFS Sbjct: 256 PLSVTLSLTRRQALLDWAERHQRWIVEDDYDGEYRYVSRPLPALKSLDRHGRVLYAGTFS 315 Query: 319 KVLFPGIRLAYLVVPLVQVERFTQVIESLSAGSPGLTQTILAAFLSGGHFARHIQRMRKL 378 KV+FPGIRLAYLV P V+RF V L G PGLTQ +++AF++ GHFARHIQRMR+L Sbjct: 316 KVMFPGIRLAYLVAPAALVQRFEIVNRVLGNGIPGLTQALVSAFMTEGHFARHIQRMRRL 375 Query: 379 YAVRREATAAGLESVLGKHVRIDRQPGGMHLILRLRGDRSDRRLVASMRAGGLYAEALTD 438 YA RR ATAAGL V G + ID QPGGMHL++R++G +DR L M + GLYA AL+ Sbjct: 376 YAERRNATAAGLAKVFGPGMPIDPQPGGMHLLVRMKGRHTDRELARRMLSNGLYAHALSR 435 Query: 439 WTRGRHGVSALLLNFTNIDSQRTAENLGRRILNSM 473 W S LL++FTNI+SQ AE LGRRIL M Sbjct: 436 WATAASCGSGLLMSFTNIESQDRAEQLGRRILELM 470 >gb|EGP45417.1| GntR family regulatory protein 37 [Achromobacter xylosoxidans AXX-A] Length = 471 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 287/470 (61%), Positives = 346/470 (73%), Gaps = 3/470 (0%) Query: 6 LQKFQPLDPAAAA--PLYQQIYDRVRDAITNGVLKPGDRIPSARALANELGLARGTIEAA 63 L L PAA+ PLY+Q+Y+R R AI G LKPGDRIPSARALA +LG+ARGTIE A Sbjct: 3 LASLASLPPAASGDEPLYRQVYERFRGAIAQGTLKPGDRIPSARALAKDLGVARGTIEMA 62 Query: 64 YSLLAAEGYIEARRQAGTIVSPVLDPQGPIARSAALPTPRADAVSFRPESILPFQMGLPA 123 YSLL AEGY++ R QAGT+V+P L Q P D +P ++LPFQMGLPA Sbjct: 63 YSLLHAEGYVQPRGQAGTVVTPGLHAQAAPRPLPPPAKPDPDTWR-QPPTLLPFQMGLPA 121 Query: 124 LDAFPRKIWARLGARSVRAMQPFDMIHPPVCGLASLRMEIVKYLQIARGISCSPSQVFLT 183 LDAFPRKIWARLGAR +RA Q D+ +PP GL +LR I +LQ+ARGI C+P+QVF+T Sbjct: 122 LDAFPRKIWARLGARHLRATQAADLSYPPADGLPALRTAIAAHLQVARGIHCAPAQVFIT 181 Query: 184 SGYRQSVELIGYALLKAGDGVWLEDPGYPPTREILKYMNIDGVSVPVDEEGIIVSDATKL 243 SGYR+S+ L+ ALL+ GD VW+EDPGYPPTRE+LK+ + V VD EGI+VS Sbjct: 182 SGYRESLNLVIQALLQPGDEVWVEDPGYPPTRELLKHSGLALAPVEVDAEGIMVSRGIAQ 241 Query: 244 APRARAAVVTPAHQSPLCMSLSLPRRLALLDWAARSKAWIVEDDYDGEYRYVSRPLPALK 303 APRA AA+VTPAHQSPL ++LSL RR ALL+WA R++ WIVEDDYDGEYRYVSRPLPALK Sbjct: 242 APRASAAIVTPAHQSPLSVTLSLTRRQALLEWAERNQRWIVEDDYDGEYRYVSRPLPALK 301 Query: 304 SLDRDGRVLYAGTFSKVLFPGIRLAYLVVPLVQVERFTQVIESLSAGSPGLTQTILAAFL 363 SLDR GRVLY GTFSKV+FPGIRLAYLVVP QV RF V L G PGLTQ +++ F+ Sbjct: 302 SLDRHGRVLYTGTFSKVMFPGIRLAYLVVPEAQVRRFEDVNRVLGNGIPGLTQALVSTFM 361 Query: 364 SGGHFARHIQRMRKLYAVRREATAAGLESVLGKHVRIDRQPGGMHLILRLRGDRSDRRLV 423 GHFARHIQRMR+LY+ RR+ATAAGL V G + I+ QPGGMHL++R++G ++DR L Sbjct: 362 LEGHFARHIQRMRRLYSERRDATAAGLAKVFGPAMPINPQPGGMHLLVRMQGHQTDRPLA 421 Query: 424 ASMRAGGLYAEALTDWTRGRHGVSALLLNFTNIDSQRTAENLGRRILNSM 473 M G+YA AL+ WT + LL++FTNI+SQ AE LGRRIL M Sbjct: 422 QRMVEHGIYAHALSRWTTAAPCGAGLLMSFTNIESQERAEQLGRRILELM 471