BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0040.p (857 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07030016.1| multi-sensor signal transduction histidine ki... 483 e-134 ref|YP_589922.1| PAS/PAC sensor signal transduction histidine ki... 466 e-129 ref|YP_004612918.1| PAS/PAC sensor signal transduction histidine... 464 e-128 ref|YP_347983.1| PAS/PAC sensor Signal transduction histidine ki... 446 e-122 ref|YP_003604739.1| PAS/PAC sensor signal transduction histidine... 445 e-122 >ref|ZP_07030016.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] gb|EFI57503.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 1048 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 324/865 (37%), Positives = 475/865 (54%), Gaps = 62/865 (7%) Query: 2 EARLRR-RDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLG---RASESLYRSIS 57 E RLRR DG+Y WF +R PL +++KW G+ DIED RASE I Sbjct: 211 EVRLRRIADGQYRWFLVRGMPLRDEHGEVLKWYGIATDIEDHKRADEALRASERELNLII 270 Query: 58 DTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIA 117 +TIPA+ + G + NQH LD+VG + E + W VHPDDL + +W +A Sbjct: 271 NTIPALSWSARTDGTADFFNQHYLDFVGLSAEQAQDWGWTVAVHPDDLGGLAGSWQSIMA 330 Query: 118 TGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLLLCEKQ 177 TG+ + E R+RR DG YRWF R P RD G IV+W+ I +DI R+RAE LL EK+ Sbjct: 331 TGKVGEAEARLRRFDGEYRWFLFRANPLRDESGNIVKWFGINTDITARKRAEDLLTGEKR 390 Query: 178 LLEMAAAGSSMSDILVALCRLVVSTSEGCYCSVVLVDPTGTRLEHGAAPSLPATFINSII 237 +LEM A G ++ IL +CR V + G SV+LVD G RL HG APSLP T+ ++I Sbjct: 391 ILEMVAKGDPLNQILDGVCRFVEEQASGFLASVLLVD--GGRLRHGGAPSLPRTYTDAID 448 Query: 238 GRPVNVDSGPCAMAAHLNEQVIAADLMLETRWAAHAWCPMAMAHGLQACWSTPITSTMGK 297 G +G C AA+ EQVI AD+ + W + A+ H L+ACWSTP+ S+ GK Sbjct: 449 GLTFGPSTGSCGTAAYRGEQVIVADIATDPLWENYR--EAALPHSLRACWSTPVFSSQGK 506 Query: 298 VVGAFAIYYDKPRTPTREQQDLIAQFSHVASIAIERALSDTALKQSEARKAAILDAALDC 357 V+ FA+YY +PR+P+ + I Q +H+ +AIER L AL++SE+ A Sbjct: 507 VIATFAMYYREPRSPSSHDLETIEQITHLVGVAIERKLIQEALQRSESYLAEAQ------ 560 Query: 358 IITMDHEGRVIEFNPAAERTFGYPRGEIVGREL-VDAIIPPA----LRKKHRQGMARYLR 412 + H G +N RT Y + + R D + P + K H + A+ Sbjct: 561 --RLTHTGS-WAWNV---RTGAYFWSQEIFRIYDCDPRMVPTWDFLIEKTHPEDRAK--- 611 Query: 413 TGETRLIGKRVEMTAVRADGSEFPVEL-------AISRIPLEGPP---------SFTCYL 456 I +RV++ +++ + +F + I + P + Sbjct: 612 ------IERRVKIESLKKEWKDFESDFRIVLTDGTIKHLHALAHPVVDESGEITEVVGTI 665 Query: 457 RDITERRRSEEALQRSGAFLTEAQHLSKTGSFSWCVATGEIIWSEQVYRIFEFD-QAIPV 515 D+TER+R+EE L+RS L EAQ LS GS+ VA+G +I S ++ RIF Sbjct: 666 MDVTERKRAEEKLRRSEESLLEAQRLSHMGSWRHDVASGAVIVSPEILRIFGVQPDEDSS 725 Query: 516 TLELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYLHLVAHATRNRRGQ 575 + E SR HP+D ++++ + D+E ++R+++ D ++K+LH VAH + G+ Sbjct: 726 SAEFWFSRNHPEDQQRIRELFEKSERLKTDYEGDYRIVLTDGTIKHLHAVAHPVLSLSGE 785 Query: 576 -PEYIGAVQDVT---KRRVSEEALEDVRSELARVSRIASLGALTASIAHEVNQPLSGILT 631 E IG DVT + E L + ++LA ++R+ LG L +S+AHE+NQP++ +T Sbjct: 786 LVEMIGTTIDVTERKRAEEERERLRQLETDLAHMNRVTMLGELASSLAHELNQPIAAAIT 845 Query: 632 NASTCLRMLAADPPNVDGARETARRTIRDGNRASDVIVRLRALFGKRRFSMER--VHLNE 689 +A+ C R LA +PP+++ AR A R DG+RA+++I RLRA + K ER V +NE Sbjct: 846 SANACSRWLAHNPPDLERARAAATRIEHDGSRAAEIIQRLRAFY-KTGAPPERELVDMNE 904 Query: 690 ATQEVIALLLNELKRDRINIEMDFDEDLPTVMGDRVQLQQVILNLVRNASDAMGGIDNRP 749 E++ALL +E R I++ + LP +M DRVQLQQV+LNL+ N +AM G RP Sbjct: 905 VAGEMLALLRDEADRHSISLRTELATQLPQIMADRVQLQQVLLNLLLNGMEAMTG---RP 961 Query: 750 K-RLIVKTERDTDESVRLTVKDEGVGFAPHDLHRIFDAFFTTKEAGMGIGLWVSRSIIEN 808 RL+++++ D + ++V D GVG L ++F AF+TTK G G+GL +SRSIIE Sbjct: 962 AGRLMIRSQSTEDGLLLISVSDTGVGLPCEKLDQLFRAFYTTKPQGTGMGLAISRSIIEA 1021 Query: 809 HHGRLWAQPNDTHGASVSFSIPLGL 833 H GRLWA N GA+ F++P L Sbjct: 1022 HGGRLWATANAERGATFHFTLPAEL 1046 Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 4/127 (3%) Query: 54 RSISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWD 113 R + +T+PAM + P G +N+ +Y G + E GW S VHP+D W Sbjct: 142 REVIETMPAMAWSALPDGSNAFINKQWAEYTGLSAEQTAGWL--STVHPEDASGHTEKWR 199 Query: 114 RSIATGEPYDVEQRMRR-ADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRA-ESL 171 +S+ATG+P + E R+RR ADG YRWF VRGMP RD G++++WY I +DI+D +RA E+L Sbjct: 200 QSLATGQPLEHEVRLRRIADGQYRWFLVRGMPLRDEHGEVLKWYGIATDIEDHKRADEAL 259 Query: 172 LLCEKQL 178 E++L Sbjct: 260 RASEREL 266 >ref|YP_589922.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gb|ABF39848.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 713 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/373 (62%), Positives = 287/373 (76%), Gaps = 1/373 (0%) Query: 458 DITERRRSEEALQRSGAFLTEAQHLSKTGSFSWCVATGEIIWSEQVYRIFEFDQAIPVTL 517 DI ER+++EE +RS AFL E +L++ G+FSW V T +I WS+Q+Y+IFEF+ P+T Sbjct: 334 DIEERKQAEERSRRSEAFLAEGLNLARVGNFSWLVETDDIKWSDQLYQIFEFEPGQPITF 393 Query: 518 ELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYLHLVAHATRNRRGQPE 577 E I SRVHPDD+ + +MI + DFEYEHRLLMPD SVKYL LVAHA RN Q E Sbjct: 394 EKIGSRVHPDDVHTLYNMIEKAQRNVSDFEYEHRLLMPDGSVKYLRLVAHAGRNSEHQVE 453 Query: 578 YIGAVQDVTKRRVSEEALEDVRSELARVSRIASLGALTASIAHEVNQPLSGILTNASTCL 637 YIGAVQDVT+R ++++AL RS+LA VSR+ SLG LTASIAHEVNQPLSGI+TNASTCL Sbjct: 454 YIGAVQDVTQRHLADDALARARSQLANVSRVTSLGVLTASIAHEVNQPLSGIITNASTCL 513 Query: 638 RMLAADPPNVDGARETARRTIRDGNRASDVIVRLRALFGKRRFSMERVHLNEATQEVIAL 697 RML+A+PPNV+GARETA RTIRDGNRA+DVI RLR LF ++ S E V LN+AT+EVIAL Sbjct: 514 RMLSAEPPNVEGARETALRTIRDGNRAADVISRLRTLFTRKDRSAEAVDLNDATKEVIAL 573 Query: 698 LLNELKRDRINIEMDFDEDLPTVMGDRVQLQQVILNLVRNASDAMGGIDNRPKRLIVKTE 757 LNEL R ++ + + +DLP V+GDRVQLQQVI+NL+RNASDAM I +RP+ L+++TE Sbjct: 574 ALNELHRGKVVLRPELGDDLPPVIGDRVQLQQVIMNLMRNASDAMSTIHDRPRDLLIRTE 633 Query: 758 RDTDESVRLTVKDEGVGFAPHDLHRIFDAFFTTKEAGMGIGLWVSRSIIENHHGRLWAQP 817 D E+VRL+V D GVGF R+F+AF+TTK GMGIGL +SRSIIE H GRLWA P Sbjct: 634 SD-GEAVRLSVTDSGVGFDAQSADRLFEAFYTTKNDGMGIGLSISRSIIEAHQGRLWATP 692 Query: 818 NDTHGASVSFSIP 830 N GA+ FS+P Sbjct: 693 NQGPGATFCFSLP 705 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 75/123 (60%) Query: 47 RASESLYRSISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLP 106 R SE+ + DTIP + + P G E +++ +Y G + E+ GW + HP+DLP Sbjct: 220 RKSEAKLHQVIDTIPTLAWCNLPDGPNEFLSKRWHEYTGLSPEESHGWGWQTAFHPEDLP 279 Query: 107 SVRVAWDRSIATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRR 166 ++ W I TGEP ++E R+RR DGVYRWF +R P RD G IVRWY +DI++R+ Sbjct: 280 ALMKKWMELIETGEPDEIESRLRRYDGVYRWFLIRVEPFRDETGTIVRWYGTSTDIEERK 339 Query: 167 RAE 169 +AE Sbjct: 340 QAE 342 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 1 MEARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWL---GRASES-LYRSI 56 +E+RLRR DG Y WF IRV P IV+W G + DIE+R R SE+ L + Sbjct: 297 IESRLRRYDGVYRWFLIRVEPFRDETGTIVRWYGTSTDIEERKQAEERSRRSEAFLAEGL 356 Query: 57 SDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSI 116 + ++ T +++ +Q + + + + GS VHPDD+ ++ +++ Sbjct: 357 NLARVGNFSWLVETDDIKWSDQLYQIFEFEPGQPITFEKIGSRVHPDDVHTLYNMIEKAQ 416 Query: 117 ATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQI 152 ++ E R+ DG ++ + R++ Q+ Sbjct: 417 RNVSDFEYEHRLLMPDGSVKYLRLVAHAGRNSEHQV 452 >ref|YP_004612918.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gb|AEH88824.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1186 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 253/508 (49%), Positives = 328/508 (64%), Gaps = 21/508 (4%) Query: 332 ERALSDTALKQSEARKAAILDAALDCIITMDHEGRVIEFNPAAERTFGYPRGEIVGRELV 391 +R ++ AL +SE + I++ + D +G N G E Sbjct: 665 DRKRAEQALVESERQSRLIVNTIPGLVAIFDEDGEPESLNEQFLEYLGQTLEEFAHWATN 724 Query: 392 DAIIPPALRKKHRQGMARYLRTGETRLIGKRVEMTAVRADGSEFPVELAISRIPLEGPP- 450 + P L +H + + L TG G E R DG+ L G P Sbjct: 725 GTVHPDDL-SRHIDALTQSLGTGR----GIDFETRLRRFDGT-------YRWFQLRGQPL 772 Query: 451 --SFTCYLR------DITERRRSEEALQRSGAFLTEAQHLSKTGSFSWCVATGEIIWSEQ 502 S C +R DI +R+R+EE L+RS AFL E Q+L++ GSFSW V+ E++WSEQ Sbjct: 773 RASNGCIVRWYVLMTDIDDRKRAEEELRRSEAFLAEGQNLARMGSFSWDVSKAEMVWSEQ 832 Query: 503 VYRIFEFDQAIPVTLELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYL 562 +YRIF+ + VT +LIASR HP+D+ ++ DM+ R D EY HR++ D+S+K+L Sbjct: 833 LYRIFDLQPGLHVTFQLIASRFHPEDMPMLGDMVERAERGENDLEYRHRIITSDRSIKHL 892 Query: 563 HLVAHATRNRRGQPEYIGAVQDVTKRRVSEEALEDVRSELARVSRIASLGALTASIAHEV 622 HL+AH RN G EYIGAV D+T+RR+SEEALE VR+EL RI SLGALTASIAHEV Sbjct: 893 HLIAHGVRNSIGAMEYIGAVLDITQRRLSEEALEKVRTELGLAMRIMSLGALTASIAHEV 952 Query: 623 NQPLSGILTNASTCLRMLAADPPNVDGARETARRTIRDGNRASDVIVRLRALFGKRRFSM 682 NQPL+GI+TNA TCLRMLA DPPN++GARETARRTIRDGNRA+DVI RLRALF KR M Sbjct: 953 NQPLAGIITNAGTCLRMLADDPPNINGARETARRTIRDGNRAADVITRLRALFSKRAAVM 1012 Query: 683 ERVHLNEATQEVIALLLNELKRDRINIEMDFDEDLPTVMGDRVQLQQVILNLVRNASDAM 742 E V LNEA +EVIAL L EL+R+ I++ LP GDRVQLQQVI+NL+RNA DA+ Sbjct: 1013 EPVDLNEAIREVIALSLGELQRNSISLITKLATGLPMAAGDRVQLQQVIMNLLRNAIDAV 1072 Query: 743 GGIDNRPKRLIVKTERDTDESVRLTVKDEGVGFAPHDLHRIFDAFFTTKEAGMGIGLWVS 802 + +RP+R+++ TE D ++RL+V+D G+GF D+ +IF+AF+TTK GMGIGL VS Sbjct: 1073 MTVSDRPRRVVIATELGEDGNIRLSVEDAGIGFGAQDMEQIFEAFYTTKADGMGIGLSVS 1132 Query: 803 RSIIENHHGRLWAQPNDTHGASVSFSIP 830 RSIIENH GR+WA+ ND G +V FSIP Sbjct: 1133 RSIIENHRGRIWAEANDGSGVTVCFSIP 1160 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 104/174 (59%), Gaps = 3/174 (1%) Query: 2 EARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLGRA---SESLYRSISD 58 EAR+RR DGEY WF L IV+W G N++I+DR +A SE R I + Sbjct: 626 EARMRRFDGEYRWFLFLGDTLRDEAGNIVRWYGTNVEIDDRKRAEQALVESERQSRLIVN 685 Query: 59 TIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIAT 118 TIP +V GE ES+N+ L+Y+G TLE+ W T VHPDDL A +S+ T Sbjct: 686 TIPGLVAIFDEDGEPESLNEQFLEYLGQTLEEFAHWATNGTVHPDDLSRHIDALTQSLGT 745 Query: 119 GEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLL 172 G D E R+RR DG YRWF +RG P R + G IVRWY++ +DIDDR+RAE L Sbjct: 746 GRGIDFETRLRRFDGTYRWFQLRGQPLRASNGCIVRWYVLMTDIDDRKRAEEEL 799 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Query: 2 EARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLGRA---SESLYRSISD 58 EAR+RR DGEY WF PL I++W G N+DIEDR +A SE R I + Sbjct: 500 EARIRRYDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRESERNLRQIIN 559 Query: 59 TIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIAT 118 TIP ++ P G + ++ LD+ G ++E +GW +HPDD + W S+A+ Sbjct: 560 TIPTAIWSTRPDGYCDFLHDRWLDFTGLSMEQAEGWGWRVAIHPDDFDELVRFWKASLAS 619 Query: 119 GEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLLL-CEKQ 177 G P + E RMRR DG YRWF G RD G IVRWY +IDDR+RAE L+ E+Q Sbjct: 620 GSPGETEARMRRFDGEYRWFLFLGDTLRDEAGNIVRWYGTNVEIDDRKRAEQALVESERQ 679 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 15/227 (6%) Query: 2 EARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLGRA---SESLYRSISD 58 EAR+RR DGEY WF PL I++W G N+DIEDR +A SE R I + Sbjct: 374 EARIRRFDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRDSEVNLRKIIN 433 Query: 59 TIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIAT 118 TIP + P G + +N LDY G T + GW + +HPDD + W +A+ Sbjct: 434 TIPTSAWSTLPDGYCDFLNDRWLDYAGFTEDQAVGWAWAAAIHPDDASGLAEYWQSCLAS 493 Query: 119 GEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLLLCEKQL 178 G P E R+RR DG YRWF P RD G I+RWY DI+DR+RA+ L ++ Sbjct: 494 GTPVSTEARIRRYDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRESER- 552 Query: 179 LEMAAAGSSMSDILVALCRLVVSTSEGCYCSVV---LVDPTGTRLEH 222 ++ I+ + + ST YC + +D TG +E Sbjct: 553 --------NLRQIINTIPTAIWSTRPDGYCDFLHDRWLDFTGLSMEQ 591 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 93/175 (53%), Gaps = 3/175 (1%) Query: 1 MEARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLG---RASESLYRSIS 57 +EARL D +Y WF IR PL +I++W L+IDI++R R SE R I Sbjct: 247 VEARLLGADNKYRWFQIRGLPLEDRNGRIMRWYSLHIDIDERKQAEEALRESEVNLRKII 306 Query: 58 DTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIA 117 +TIP + P G + +N LDY G T + GW + +HPDD + W +A Sbjct: 307 NTIPTSAWSTLPDGYCDFLNDRWLDYAGFTSDQAVGWAWAAAIHPDDASGLAEYWQSCLA 366 Query: 118 TGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLL 172 +G P E R+RR DG YRWF P RD G I+RWY DI+DR+RA+ L Sbjct: 367 SGTPVSTEARIRRFDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQAL 421 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/126 (45%), Positives = 82/126 (65%) Query: 47 RASESLYRSISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLP 106 R +E + I+D+IPA + +TPTGE+E+VN ++ Y G ++LKGW T VHP D+ Sbjct: 170 RENEDDAKLIADSIPAGIAVLTPTGEIEAVNSYIAGYFGKPKDELKGWGTAETVHPADIQ 229 Query: 107 SVRVAWDRSIATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRR 166 V ++ SI G PY+VE R+ AD YRWF +RG+P D G+I+RWY + DID+R+ Sbjct: 230 RVVESFRYSIKAGMPYEVEARLLGADNKYRWFQIRGLPLEDRNGRIMRWYSLHIDIDERK 289 Query: 167 RAESLL 172 +AE L Sbjct: 290 QAEEAL 295 Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 29/283 (10%) Query: 336 SDTALKQSEARKAAILDAALDCIITMDHEGRVIEFNPAAERTFGYPRGEIVGRELVDAII 395 S+ A++++E I D+ I + G + N FG P+ E+ G + + Sbjct: 165 SEVAVRENEDDAKLIADSIPAGIAVLTPTGEIEAVNSYIAGYFGKPKDELKGWGTAETVH 224 Query: 396 PP-------ALRKKHRQGMARYLRTGETRLIGKRVEMTAVRADGSEFPVELAISRIPLEG 448 P + R + GM + E RL+G + + G P+E RI Sbjct: 225 PADIQRVVESFRYSIKAGMPYEV---EARLLGADNKYRWFQIRG--LPLEDRNGRIM--- 276 Query: 449 PPSFTCYLRDITERRRSEEALQRSGAFLTEAQHLSKTGSFS-----WCVATGEIIWSEQV 503 ++ ++ DI ER+++EEAL+ S L + + T ++S +C + W + Sbjct: 277 -RWYSLHI-DIDERKQAEEALRESEVNLRKIINTIPTSAWSTLPDGYCDFLND-RWLD-- 331 Query: 504 YRIFEFDQAIPVTLELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYLH 563 Y F DQA+ A+ +HPDD S + + A E R+ D ++ Sbjct: 332 YAGFTSDQAVGWAW---AAAIHPDDASGLAEYWQSCLASGTPVSTEARIRRFDGEYRWFL 388 Query: 564 LVAHATRNRRGQ-PEYIGAVQDVTKRRVSEEALEDVRSELARV 605 +A+ R+ G + G D+ R+ +++AL D L ++ Sbjct: 389 FLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRDSEVNLRKI 431 >ref|YP_347983.1| PAS/PAC sensor Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gb|ABA73994.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 657 Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/387 (58%), Positives = 287/387 (74%), Gaps = 9/387 (2%) Query: 458 DITERRRSEEALQRSGAFLTEAQHLSKTGSFSWCVATGEIIWSEQVYRIFEFDQAIPVTL 517 DI +R+R+E FL +AQ LS TG+FSW V+T EI WS++VYRI E D P Sbjct: 271 DIEDRKRAE-------VFLAKAQRLSATGTFSWRVSTDEITWSDEVYRILELDPDTPPGF 323 Query: 518 ELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYLHLVAHATRNRRGQPE 577 E I RVHPDDIS ++MI R + DFE+EHRLLMPD +VKY+ LVAH+ + E Sbjct: 324 EAIYRRVHPDDISSHREMIKRQRRKGRDFEHEHRLLMPDGTVKYVRLVAHSIAHAPDGFE 383 Query: 578 YIGAVQDVTKRRVSEEALEDVRSELARVSRIASLGALTASIAHEVNQPLSGILTNASTCL 637 YI A+QD+T+RR++EE L RSEL ++R+ASLGA+TASIAHEVNQPL+GI+TNASTCL Sbjct: 384 YIAALQDITQRRLAEEVLSKARSELTHLARVASLGAVTASIAHEVNQPLAGIITNASTCL 443 Query: 638 RMLAADPPNVDGARETARRTIRDGNRASDVIVRLRALFGKRRFSMERVHLNEATQEVIAL 697 RML ADPPNV+GARETARRTIRDGNRA+DVI RLRALF K+ ++E V+LN+A +EVIA+ Sbjct: 444 RMLGADPPNVEGARETARRTIRDGNRAADVINRLRALFSKKSITIEDVNLNDAAREVIAM 503 Query: 698 LLNELKRDRINIEMDFDEDLPTVMGDRVQLQQVILNLVRNASDAMGGIDNRPKRLIVKTE 757 LL EL+R+ + + F E LP V GDRVQLQQVILNL+ NA++AM I RP++LIV T+ Sbjct: 504 LLGELQRNGVVLHPQFAEALPLVRGDRVQLQQVILNLIMNAAEAMSAIHGRPRQLIVSTD 563 Query: 758 RDTDESVRLTVKDEGVGFAPHDLHRIFDAFFTTKEAGMGIGLWVSRSIIENHHGRLWAQP 817 +DE+V L VKD G G P D+ RIF+AF+TTK +GMG+GL +SRSIIE H G+LWA Sbjct: 564 LGSDENVYLAVKDSGNGVDPQDIERIFNAFYTTKSSGMGVGLSISRSIIERHDGKLWASA 623 Query: 818 NDTHGASVSFSIP--LGLASAENHDLS 842 ND GA+ +F+IP L +N DL+ Sbjct: 624 NDGPGATFTFAIPHSTDLPQTDNRDLA 650 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 210/447 (46%), Gaps = 61/447 (13%) Query: 55 SISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDR 114 SI D+IPAMV FMTP+GELE VN+ ++DY+G L +LK W+ G VHPDDLPSV AW Sbjct: 32 SIIDSIPAMVAFMTPSGELEQVNRQIMDYIGAPLHELKKWQAGETVHPDDLPSVIAAWMH 91 Query: 115 SIATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLLLC 174 S++TG PY++E R+RRADGVYRWFHVRG+P R++ G I RW +++ DID+RRR ++L+ Sbjct: 92 SVSTGTPYEIEHRIRRADGVYRWFHVRGLPIRNSEGTITRWCVLQVDIDERRRDKALIAS 151 Query: 175 EKQLLEMAAAGSSMSDILVALCRLVVSTS-EG--CYCSVVLVDPTGTRLEHGAAPSLPAT 231 L E++A+ + I+ A+ V S S EG + + D TG +E A+ Sbjct: 152 --ALAEVSASEERLRGIIDAVPGFVWSASPEGNVGFVNQRWCDYTGMSVEQACGDGWTAS 209 Query: 232 FINSIIGRPVNVDSGPCAMAAHLNEQVIAADLMLETRWAAHAWCPMAMAHGLQACWSTPI 291 ++ D P L W A LQ+ + Sbjct: 210 ---------IHPDDAPG----------------LGGYWQAL----------LQSGSAGEY 234 Query: 292 TSTMGKVVGAFAIYYDKPRTPTREQQDLIAQFSHVASIAIERALSDTALKQSE---ARKA 348 + + + G + + + P R+ + ++ + +R ++ L +++ A Sbjct: 235 EARLKRFDGIYRWFLIRA-VPQRDDTGRVVRWYGENTDIEDRKRAEVFLAKAQRLSATGT 293 Query: 349 AILDAALDCIITMDHEGRVIEFNPAAERTFGYPRGEIVGRELVDAIIPPALRKKHRQGMA 408 + D I D R++E +P F E + + P HR+ + Sbjct: 294 FSWRVSTDEITWSDEVYRILELDPDTPPGF----------EAIYRRVHPDDISSHREMIK 343 Query: 409 RYLRTGETRLIGKRVEMTAVRADGSEFPVELAISRIPLEGPPSF--TCYLRDITERRRSE 466 R R G R+ M DG+ V L I P F L+DIT+RR +E Sbjct: 344 RQRRKGRDFEHEHRLLM----PDGTVKYVRLVAHSIA-HAPDGFEYIAALQDITQRRLAE 398 Query: 467 EALQRSGAFLTEAQHLSKTGSFSWCVA 493 E L ++ + LT ++ G+ + +A Sbjct: 399 EVLSKARSELTHLARVASLGAVTASIA 425 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 10/188 (5%) Query: 1 MEARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIE----DRGWLGRA------SE 50 +E R+RR DG Y WF +R P+ I +W L +DI+ D+ + A SE Sbjct: 101 IEHRIRRADGVYRWFHVRGLPIRNSEGTITRWCVLQVDIDERRRDKALIASALAEVSASE 160 Query: 51 SLYRSISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRV 110 R I D +P V+ +P G + VNQ DY G ++E G + +HPDD P + Sbjct: 161 ERLRGIIDAVPGFVWSASPEGNVGFVNQRWCDYTGMSVEQACGDGWTASIHPDDAPGLGG 220 Query: 111 AWDRSIATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAES 170 W + +G + E R++R DG+YRWF +R +P+RD G++VRWY +DI+DR+RAE Sbjct: 221 YWQALLQSGSAGEYEARLKRFDGIYRWFLIRAVPQRDDTGRVVRWYGENTDIEDRKRAEV 280 Query: 171 LLLCEKQL 178 L ++L Sbjct: 281 FLAKAQRL 288 >ref|YP_003604739.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia sp. CCGE1002] gb|ADG15228.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia sp. CCGE1002] Length = 745 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/375 (58%), Positives = 287/375 (76%), Gaps = 1/375 (0%) Query: 458 DITERRRSEEALQRSGAFLTEAQHLSKTGSFSWCVATGEIIWSEQVYRIFEFDQAIPVTL 517 DI +R+R+EE L+RS AFL E Q L++ G+FSW V TGEI WS+Q+Y IFEF+ VTL Sbjct: 368 DIDDRKRAEEELRRSEAFLAEGQALARMGNFSWHVDTGEIAWSDQLYHIFEFEPGTTVTL 427 Query: 518 ELIASRVHPDDISLMKDMIARVSAEAGDFEYEHRLLMPDQSVKYLHLVAHATRNRRGQPE 577 + I +R HP+D+ L +I +V D E ++RLLMPDQSVK++HL+ H +R G+ E Sbjct: 428 DRIVARYHPEDVGLAFQLIEQVQRGDSDVESQYRLLMPDQSVKHVHLLGHRATDRPGRRE 487 Query: 578 YIGAVQDVTKRRVSEEALEDVRSELARVSRIASLGALTASIAHEVNQPLSGILTNASTCL 637 YIG D+++RR SEEAL+ RSEL V+RI SLGALTASIAHEVNQPLSGI+TNASTCL Sbjct: 488 YIGTALDISQRRRSEEALDKARSELLNVARITSLGALTASIAHEVNQPLSGIVTNASTCL 547 Query: 638 RMLAADPPNVDGARETARRTIRDGNRASDVIVRLRALFGKRRFSMERVHLNEATQEVIAL 697 RMLAA P N++GA+ETARRTIRDGNRA+DVI RLRALF +R ++E V L +EV+AL Sbjct: 548 RMLAAVPANIEGAQETARRTIRDGNRAADVIARLRALFSRRSVTLEAVDLGHTAREVVAL 607 Query: 698 LLNELKRDRINIEMDFDEDLPTVMGDRVQLQQVILNLVRNASDAMGGIDNRPKRLIVKTE 757 + ++L RDR+++ +F + LP V DRVQ+QQVI+NL+RNA+DAM +D+RP+R+ +KTE Sbjct: 608 MQSDLDRDRVSVRAEFADGLPLVGCDRVQVQQVIMNLLRNAADAMSSVDDRPRRMSIKTE 667 Query: 758 RDTDESVRLTVKDEGVGFAPHDLHRIFDAFFTTKEAGMGIGLWVSRSIIENHHGRLWAQ- 816 ++D VRLTV+D G+GF P R+FDAF+TTK GMGIGL +SRSIIE+H+GRLWA Sbjct: 668 AESDGMVRLTVQDAGIGFDPQHTERLFDAFYTTKNDGMGIGLAISRSIIESHNGRLWAAL 727 Query: 817 PNDTHGASVSFSIPL 831 P + GAS +F +P+ Sbjct: 728 PKEGPGASFAFCLPI 742 Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 119/188 (63%), Gaps = 10/188 (5%) Query: 4 RLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLGRASESLYRS------IS 57 RLRR DG+Y F +++ PL +IV+W G+ D+ED L RA E+L R I Sbjct: 82 RLRRFDGQYRRFVLQISPLRDAEGRIVRWCGICNDVED---LRRAEEALKRRELDLQLIV 138 Query: 58 DTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIA 117 ++IP V M+PTGE+E+ N+ +Y G + E+LK WR+G +HP+DL +V VA + S+A Sbjct: 139 ESIPVPVTVMSPTGEVEAQNRLTSEYFGKSFEELKAWRSGGFIHPEDLEAVIVAQEASLA 198 Query: 118 TGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAE-SLLLCEK 176 +G ++VE R RRADG YRWF+VRG P R G I+RW+ + DI+D +RAE +L E+ Sbjct: 199 SGTAHNVETRYRRADGSYRWFNVRGFPLRGRDGGILRWFFLSIDIEDSKRAEITLAASER 258 Query: 177 QLLEMAAA 184 L E A Sbjct: 259 HLNETINA 266 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/194 (38%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 1 MEARLRRRDGEYHWFTIRVRPLVAGPEKIVKWIGLNIDIEDRGWLGRASESLYRSISDTI 60 +E R RR DG Y WF +R PL I++W L+IDIED + R +++TI Sbjct: 205 VETRYRRADGSYRWFNVRGFPLRGRDGGILRWFFLSIDIEDSKRAEITLAASERHLNETI 264 Query: 61 ---PAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRSIA 117 PA+++ G E NQH LDY+G TL ++ + VHPDD + W +A Sbjct: 265 NALPALIWSARLNGTGEFYNQHYLDYLGRTLSQVRDYGWMDSVHPDDRAGLMSVWSSVMA 324 Query: 118 TGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLLLCEKQ 177 + P E RM R DG YRWF R P RD G++V+WY + DIDDR+RAE L + Sbjct: 325 SQLPGAAEARMLRYDGQYRWFLFRTSPLRDQHGKVVKWYGVNIDIDDRKRAEEELRRSEA 384 Query: 178 LLEMAAAGSSMSDI 191 L A + M + Sbjct: 385 FLAEGQALARMGNF 398 Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%) Query: 56 ISDTIPAMVFFMTPTGELESVNQHVLDYVGTTLEDLKGWRTGSLVHPDDLPSVRVAWDRS 115 + D + M + P G ++ VN+ +Y G L W+ ++ DDLP + Sbjct: 11 VLDALSVMAWTALPDGRVDFVNRKWSEYTGRVLGTSSDWQWRDVISADDLPRLLERQTAI 70 Query: 116 IATGEPYDVEQRMRRADGVYRWFHVRGMPRRDARGQIVRWYMIESDIDDRRRAESLL 172 +A+ EP ++ R+RR DG YR F ++ P RDA G+IVRW I +D++D RRAE L Sbjct: 71 LASAEPGEIPVRLRRFDGQYRRFVLQISPLRDAEGRIVRWCGICNDVEDLRRAEEAL 127