BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0038.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004612925.1| two component LuxR family transcriptional re... 268 4e-70 ref|YP_347981.1| two component LuxR family transcriptional regul... 262 3e-68 ref|YP_591520.1| two component LuxR family transcriptional regul... 244 4e-63 ref|YP_003604740.1| two component transcriptional regulator, Lux... 242 3e-62 ref|YP_351435.1| two component LuxR family transcriptional regul... 239 3e-61 >ref|YP_004612925.1| two component LuxR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH88831.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/206 (63%), Positives = 162/206 (78%), Gaps = 1/206 (0%) Query: 1 MSHTLPIVFVVDDDISVRESLELMISSAGWRPETFSSAQGFLSHPRVE-APSCLILDVNL 59 MS +VF+VDDD+SVRESLEL+I S+GWRP+TF SA+ FL P++ SCLILDVNL Sbjct: 14 MSDEASVVFIVDDDVSVRESLELLICSSGWRPQTFGSAKDFLDRPQMALVSSCLILDVNL 73 Query: 60 PDLNGLELQVRLAGDRTDMPIIFITGYGDVPTSVRAMKAGAVEFLTKPFSDDALLEAIRN 119 PDL+GL+LQ +A +RT MPIIFITGYGDVP +V+AMKAGA+EFLTKPF D+ LL AI+ Sbjct: 74 PDLSGLDLQSLMANERTPMPIIFITGYGDVPMTVKAMKAGAIEFLTKPFDDEELLSAIKL 133 Query: 120 AIEHSRTLLDRAVEIQVIADRYRMLSRREREVMSLVTTGRLNKQVAFDLGISEITVKAHR 179 A+E S++ L E Q + DR+ LSRRE+EVM+LV +G LNKQ+ F+LGISEITVKAHR Sbjct: 134 ALERSKSALALDSEFQALKDRHTSLSRREQEVMTLVVSGLLNKQIGFELGISEITVKAHR 193 Query: 180 GRVMRKMQAGSLVDLAAMAAKLSLGQ 205 G+ MRKMQA SL L MAA+L + Q Sbjct: 194 GQAMRKMQARSLAQLVHMAARLGITQ 219 >ref|YP_347981.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA73992.1| LuxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 204 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/202 (61%), Positives = 158/202 (78%) Query: 1 MSHTLPIVFVVDDDISVRESLELMISSAGWRPETFSSAQGFLSHPRVEAPSCLILDVNLP 60 MS P+VFVVDDDISVRESLELMI AGW+P F SAQ FL PR PSCL+LD+NLP Sbjct: 1 MSEVTPVVFVVDDDISVRESLELMIRFAGWQPRLFESAQDFLDAPRALVPSCLVLDINLP 60 Query: 61 DLNGLELQVRLAGDRTDMPIIFITGYGDVPTSVRAMKAGAVEFLTKPFSDDALLEAIRNA 120 DL+GL+LQ LA +R +MPIIFITGYGD+P +VRA+KAGAVEFLTKPF+DD +L A+ +A Sbjct: 61 DLSGLDLQTALADERYNMPIIFITGYGDIPRTVRALKAGAVEFLTKPFNDDVILSAMADA 120 Query: 121 IEHSRTLLDRAVEIQVIADRYRMLSRREREVMSLVTTGRLNKQVAFDLGISEITVKAHRG 180 ++ SR L+ ++ + + Y+ L+ RE+E+M+ V +GRLNK +A DL ISEITVKAHRG Sbjct: 121 LQSSRVALEGEKNLRALLEAYKTLTPREQEIMASVVSGRLNKLIAADLNISEITVKAHRG 180 Query: 181 RVMRKMQAGSLVDLAAMAAKLS 202 +VMRKM+A SL DL MAA ++ Sbjct: 181 KVMRKMKARSLADLVKMAALIT 202 >ref|YP_591520.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gb|ABF41446.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 122/201 (60%), Positives = 155/201 (77%) Query: 1 MSHTLPIVFVVDDDISVRESLELMISSAGWRPETFSSAQGFLSHPRVEAPSCLILDVNLP 60 +SH PIVFVVD D SVR+SL+L+I + GW+ ETF SA+ FLS PR SCLIL+ +LP Sbjct: 16 VSHVTPIVFVVDADTSVRDSLDLLIRTQGWQAETFRSAREFLSRPRSHVASCLILNQSLP 75 Query: 61 DLNGLELQVRLAGDRTDMPIIFITGYGDVPTSVRAMKAGAVEFLTKPFSDDALLEAIRNA 120 D NGL+LQ R+A +R DMP+IFI+G D+PT+V AMKAGAV FL KPF +DALL+AIR Sbjct: 76 DTNGLDLQQRIARERPDMPVIFISGSQDIPTTVLAMKAGAVNFLIKPFRNDALLDAIREG 135 Query: 121 IEHSRTLLDRAVEIQVIADRYRMLSRREREVMSLVTTGRLNKQVAFDLGISEITVKAHRG 180 ++ SR LDRA E++ + + Y L+ RER+VM+LVT G LNKQV +LGI+EITVKAHRG Sbjct: 136 LDRSRFALDRAGELRELRECYSSLTPRERQVMALVTHGLLNKQVGGELGITEITVKAHRG 195 Query: 181 RVMRKMQAGSLVDLAAMAAKL 201 +VM+KM+A SL DL M+ KL Sbjct: 196 QVMQKMKANSLADLVRMSGKL 216 >ref|YP_003604740.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] gb|ADG15229.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 232 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/184 (65%), Positives = 147/184 (79%) Query: 18 RESLELMISSAGWRPETFSSAQGFLSHPRVEAPSCLILDVNLPDLNGLELQVRLAGDRTD 77 RESLEL+I SAGW+P F SA+ FL+HPRV PSCL+LDV+LPDL+GL+LQ ++ DR D Sbjct: 32 RESLELLIRSAGWQPRVFGSARQFLAHPRVCGPSCLLLDVSLPDLHGLDLQRQIVADRAD 91 Query: 78 MPIIFITGYGDVPTSVRAMKAGAVEFLTKPFSDDALLEAIRNAIEHSRTLLDRAVEIQVI 137 MPIIFITGY DVP +VRAMKAGA+EF TKPF+ +ALLEAIR+ IEHSR ++ A E + Sbjct: 92 MPIIFITGYPDVPVTVRAMKAGAIEFFTKPFNGEALLEAIRDGIEHSRHAIEAASEHAAL 151 Query: 138 ADRYRMLSRREREVMSLVTTGRLNKQVAFDLGISEITVKAHRGRVMRKMQAGSLVDLAAM 197 RY L+RREREVM+LV +G LNKQVA +LGISEITVK HRGR+M KM A SL +L M Sbjct: 152 RARYAALTRREREVMALVVSGLLNKQVAAELGISEITVKGHRGRLMEKMAANSLAELVIM 211 Query: 198 AAKL 201 AA++ Sbjct: 212 AAQV 215 >ref|YP_351435.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA77444.1| putative LuxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 221 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/203 (62%), Positives = 156/203 (76%) Query: 1 MSHTLPIVFVVDDDISVRESLELMISSAGWRPETFSSAQGFLSHPRVEAPSCLILDVNLP 60 M+ LPIVFVVDDD+SVRESLEL+I + W+P+ F SAQ FL PR PSCL+LD+NLP Sbjct: 16 MTEPLPIVFVVDDDVSVRESLELLIRFSQWQPQLFESAQAFLGQPRSPVPSCLVLDINLP 75 Query: 61 DLNGLELQVRLAGDRTDMPIIFITGYGDVPTSVRAMKAGAVEFLTKPFSDDALLEAIRNA 120 DLNGL+LQ +A D PIIFITGYGD+P +VRAMKAGAVEFLTKPF+DD LL AI NA Sbjct: 76 DLNGLDLQATIARRYPDTPIIFITGYGDIPLTVRAMKAGAVEFLTKPFNDDVLLAAIANA 135 Query: 121 IEHSRTLLDRAVEIQVIADRYRMLSRREREVMSLVTTGRLNKQVAFDLGISEITVKAHRG 180 +E SR+LL + +++ + Y L+ RE+EVM+ V G++NK +A DL ISEITVKAHRG Sbjct: 136 LEKSRSLLGQEDQLRTLRTAYATLTPREQEVMTKVVAGQMNKMIACDLAISEITVKAHRG 195 Query: 181 RVMRKMQAGSLVDLAAMAAKLSL 203 +VMRKM+A SL L MAA L++ Sbjct: 196 KVMRKMKARSLAGLVKMAALLAM 218