BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0027.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EFV87247.1| hypothetical protein HMPREF0005_05545 [Achromobac... 191 2e-47 gb|ADC52807.1| putative cytoplasmic protein involved in transcri... 189 2e-46 ref|YP_004502195.1| HxlR family transcriptional regulator [Serra... 188 2e-46 ref|ZP_06192968.1| transcriptional regulatory protein [Serratia ... 187 3e-46 ref|YP_003978416.1| HxlR family transcriptional regulator [Achro... 187 4e-46 >gb|EFV87247.1| hypothetical protein HMPREF0005_05545 [Achromobacter xylosoxidans C54] Length = 152 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 94/150 (62%), Positives = 117/150 (78%), Gaps = 1/150 (0%) Query: 1 MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60 +KRT+ A CPVARALDAIGDWWSLLIVRDAFDG+RRFG+FQK+LG+AK +L+ RLRTL Sbjct: 2 VKRTSLEGAACPVARALDAIGDWWSLLIVRDAFDGVRRFGEFQKSLGVAKNILSDRLRTL 61 Query: 61 VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQA-G 119 VA +L V ASDGSAYQEYVLT++G LFP++VGLRQWGE H + EPHS L+D+ G Sbjct: 62 VAHDILAAVPASDGSAYQEYVLTQKGQALFPVIVGLRQWGEDHYYGPAEPHSTLIDRKRG 121 Query: 120 QAVGQLMLPSKSGKPLSWADTKVSKVAARR 149 QAV +L + ++ G+ L+ DT V +V R Sbjct: 122 QAVQRLEIRAQDGRVLAPDDTVVRRVGGDR 151 >gb|ADC52807.1| putative cytoplasmic protein involved in transcription [Streptomyces platensis] Length = 159 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/149 (63%), Positives = 116/149 (77%), Gaps = 1/149 (0%) Query: 1 MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60 + RT F +ECPVAR++DAIGDWWSLLIVRDAFDG RRFG+FQ++LG+AK +LT RLRTL Sbjct: 11 VTRTRFDDSECPVARSVDAIGDWWSLLIVRDAFDGSRRFGEFQRSLGVAKNILTARLRTL 70 Query: 61 VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLD-QAG 119 VA GVLE V ASDGSAY+EYVLT +G LFP++V LRQWGE + FA GEPHS L+D + G Sbjct: 71 VAGGVLESVPASDGSAYREYVLTPKGKALFPVIVALRQWGEQNFFAPGEPHSQLVDRRQG 130 Query: 120 QAVGQLMLPSKSGKPLSWADTKVSKVAAR 148 + L + S G+ L+ DT V KV+A+ Sbjct: 131 HRLRALEVLSADGRRLNPDDTTVHKVSAQ 159 >ref|YP_004502195.1| HxlR family transcriptional regulator [Serratia sp. AS12] ref|YP_004507147.1| HxlR family transcriptional regulator [Serratia sp. AS9] gb|AEF46886.1| transcriptional regulator, HxlR family [Serratia sp. AS9] gb|AEF51838.1| transcriptional regulator, HxlR family [Serratia sp. AS12] gb|AEG29545.1| transcriptional regulator, HxlR family [Serratia sp. AS13] Length = 149 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 113/147 (76%), Gaps = 1/147 (0%) Query: 1 MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60 MKR + A+CPVAR LD IGDWWSLLIVRDAFDG+RRF +FQK LG+AK +L+TRLRTL Sbjct: 1 MKRKSLEDAQCPVARTLDVIGDWWSLLIVRDAFDGVRRFSEFQKGLGMAKNILSTRLRTL 60 Query: 61 VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQ-AG 119 VA GVLE V ASDGSAYQEY LT++G LFP++VGLRQWGE HLFA GE HS L++ +G Sbjct: 61 VAHGVLEIVPASDGSAYQEYALTEKGRALFPVIVGLRQWGEDHLFASGEAHSHLVESGSG 120 Query: 120 QAVGQLMLPSKSGKPLSWADTKVSKVA 146 Q + ++ G+ L+ +T+V KV Sbjct: 121 QPIPRMTPTGHGGQTLTPLNTRVVKVG 147 >ref|ZP_06192968.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA14485.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 147 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 90/146 (61%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 1 MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60 MKR + A+CPVAR LD IGDWWSLLIVRDAFDG+RRF +FQK LG+AK +L+TRLRTL Sbjct: 1 MKRKSLEDAQCPVARTLDVIGDWWSLLIVRDAFDGIRRFSEFQKGLGMAKNILSTRLRTL 60 Query: 61 VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQ-AG 119 VA G+LE ASDGSAYQEY+LT +G LFP++VGLRQWGE HLFA+GE HS L++ +G Sbjct: 61 VAHGILEIAPASDGSAYQEYILTDKGRALFPVIVGLRQWGEDHLFAQGEAHSHLVESGSG 120 Query: 120 QAVGQLMLPSKSGKPLSWADTKVSKV 145 Q + ++ G+ L+ +T+V KV Sbjct: 121 QPIPRMTPTGHGGQTLTPLNTRVVKV 146 >ref|YP_003978416.1| HxlR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15701.1| HxlR-like helix-turn-helix family protein 2 [Achromobacter xylosoxidans A8] Length = 151 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 92/147 (62%), Positives = 112/147 (76%), Gaps = 1/147 (0%) Query: 1 MKRTAFAKAECPVARALDAIGDWWSLLIVRDAFDGLRRFGDFQKNLGIAKGMLTTRLRTL 60 +KRT+ A CPVAR+LDAIGDWWSLLIVRDAFDGLRRFG+ QK+LG+AK +L+ RLRTL Sbjct: 2 VKRTSLEGAACPVARSLDAIGDWWSLLIVRDAFDGLRRFGELQKSLGVAKNILSDRLRTL 61 Query: 61 VATGVLEQVAASDGSAYQEYVLTKRGHDLFPIVVGLRQWGEAHLFARGEPHSVLLDQA-G 119 VA G+LE ASDGSAYQEYVLT +G LFP++VGLRQWGE H + EPHS L+D+ G Sbjct: 62 VAHGILEVAPASDGSAYQEYVLTDKGRALFPVIVGLRQWGEEHYYGAAEPHSTLIDRKRG 121 Query: 120 QAVGQLMLPSKSGKPLSWADTKVSKVA 146 Q V +L + ++ G+ L D V K A Sbjct: 122 QPVRKLEIRAQDGRLLGPDDAVVQKTA 148