BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0006.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772195.1| hypothetical protein bll5555 [Bradyrhizobium ja...   129   1e-28
ref|YP_002288122.1| phasin [Oligotropha carboxidovorans OM5] >gi...   107   4e-22
ref|ZP_07025224.1| phasin [Afipia sp. 1NLS2] >gi|298592166|gb|EF...   103   8e-21
ref|YP_003692564.1| phasin [Starkeya novella DSM 506] >gi|296927...   100   9e-20
ref|YP_782967.1| phasin [Rhodopseudomonas palustris BisA53] >gi|...    98   3e-19

>ref|NP_772195.1| hypothetical protein bll5555 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50820.1| bll5555 [Bradyrhizobium japonicum USDA 110]
          Length = 161

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 94/131 (71%)

Query: 18  FSLPLFALPQAFQGIAEQNATRAREQFEKVKEASEEISVLLKEAYAVNAKGAADYAAKVI 77
           F +P F +   F  +A   ATRA+  FE++K  SEEI+  L +A + +AK +ADY  KVI
Sbjct: 27  FDMPFFNIQAIFGDLAAPAATRAKANFEQMKVTSEEITAALCDACSTSAKRSADYGTKVI 86

Query: 78  DISHSNASSALAFTSELAGTRSLSEVIQLSADHGRKNFEATTAQNKELWEIAKKVATETS 137
           +IS++N SSAL F S+LA  RS ++++ LS  HGRK FEA +AQN+ELW++A+KVATET+
Sbjct: 87  EISNANTSSALEFFSQLADARSFADLVNLSTAHGRKTFEAASAQNRELWDLAQKVATETA 146

Query: 138 EPIKKSFAKAL 148
           EPIK SF + L
Sbjct: 147 EPIKNSFNRVL 157


>ref|YP_002288122.1| phasin [Oligotropha carboxidovorans OM5]
 ref|YP_004633776.1| hypothetical protein OCA5_c28440 [Oligotropha carboxidovorans OM5]
 gb|ACI92257.1| phasin [Oligotropha carboxidovorans OM5]
 gb|AEI03958.1| hypothetical protein OCA4_c28430 [Oligotropha carboxidovorans OM4]
 gb|AEI07535.1| hypothetical protein OCA5_c28440 [Oligotropha carboxidovorans OM5]
          Length = 140

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 85/132 (64%)

Query: 18  FSLPLFALPQAFQGIAEQNATRAREQFEKVKEASEEISVLLKEAYAVNAKGAADYAAKVI 77
           F++  F +P+ F+  AE    +AR+ ++K K A+E  +  L+ AYA   KGA+ + AK++
Sbjct: 6   FAVTPFQIPEPFRAFAENGVNQARDGYQKFKAAAESNNEALEAAYASATKGASGFGAKLV 65

Query: 78  DISHSNASSALAFTSELAGTRSLSEVIQLSADHGRKNFEATTAQNKELWEIAKKVATETS 137
           +I+ +N +S+  F   L G  SL E ++L + H RK FEA TAQ++EL E+ +KVATET 
Sbjct: 66  EIAQTNVTSSFDFAQSLFGVTSLPEALELVSAHARKQFEALTAQSQELAELGQKVATETV 125

Query: 138 EPIKKSFAKALK 149
           EPIK S  KA +
Sbjct: 126 EPIKASVTKAFQ 137


>ref|ZP_07025224.1| phasin [Afipia sp. 1NLS2]
 gb|EFI52366.1| phasin [Afipia sp. 1NLS2]
          Length = 141

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 82/132 (62%)

Query: 18  FSLPLFALPQAFQGIAEQNATRAREQFEKVKEASEEISVLLKEAYAVNAKGAADYAAKVI 77
           F+   F +P+ F+  AE    +AR+ ++K+K A+E  +  L+  YA   KGA+ +AAK++
Sbjct: 7   FTTTPFQIPEQFRAFAENGVNQARDGYQKLKAAAESNNEALEAVYASATKGASGFAAKLV 66

Query: 78  DISHSNASSALAFTSELAGTRSLSEVIQLSADHGRKNFEATTAQNKELWEIAKKVATETS 137
           +I+ +N +S+  F     G  SL E  +L + H RK FEA TAQ+KEL E  +KVATET 
Sbjct: 67  EIAQANVTSSFDFAQSFVGVGSLPEAAELVSAHTRKQFEALTAQSKELAEFGQKVATETV 126

Query: 138 EPIKKSFAKALK 149
           EP+K S  KA +
Sbjct: 127 EPLKASVTKAFQ 138


>ref|YP_003692564.1| phasin [Starkeya novella DSM 506]
 gb|ADH87945.1| phasin [Starkeya novella DSM 506]
          Length = 169

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 4/140 (2%)

Query: 11  DNPKAGGFSLPL-FALPQAFQGIAEQNATRAREQFEKVKEASEEISVLLKEAYAVNAKGA 69
           D PK   F +P    +P   + +AE++   ARE +EK+K ++EE + LL++ Y+  +KG 
Sbjct: 30  DIPK---FDIPASMEVPAVMREMAEKSVQSAREAYEKMKTSAEETTDLLEDTYSTASKGV 86

Query: 70  ADYAAKVIDISHSNASSALAFTSELAGTRSLSEVIQLSADHGRKNFEATTAQNKELWEIA 129
           A+Y A  ++   +N ++A  +   L G +S+SE ++LS  H RK F+  +AQ KEL  +A
Sbjct: 87  AEYNAVALESLRTNVNAAFDYVGALFGAKSVSEAVELSTGHMRKQFDVLSAQAKELSTLA 146

Query: 130 KKVATETSEPIKKSFAKALK 149
           +KVAT+T+EPIK S  K +K
Sbjct: 147 QKVATDTAEPIKASVEKTIK 166


>ref|YP_782967.1| phasin [Rhodopseudomonas palustris BisA53]
 gb|ABJ07987.1| phasin [Rhodopseudomonas palustris BisA53]
          Length = 145

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 83/130 (63%)

Query: 23  FALPQAFQGIAEQNATRAREQFEKVKEASEEISVLLKEAYAVNAKGAADYAAKVIDISHS 82
           F +P+  +  AE+  ++ARE + ++K+A+E  +  ++ A++  +KGA DY+AK++DI  +
Sbjct: 15  FQVPEQMRAFAEKGVSQARESYIRIKDAAETQNDAIEAAFSSVSKGAGDYSAKLLDIVKT 74

Query: 83  NASSALAFTSELAGTRSLSEVIQLSADHGRKNFEATTAQNKELWEIAKKVATETSEPIKK 142
           N  ++  F   L G +S+ E ++L   H RK  E  TAQ KEL E+++KVA+++ EPIK 
Sbjct: 75  NTEASFDFAQSLVGAKSVPEALELWTAHARKGVETVTAQTKELVELSQKVASDSVEPIKA 134

Query: 143 SFAKALKTPS 152
           S +K    PS
Sbjct: 135 SASKLFTPPS 144