BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0004.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772194.1| hypothetical protein blr5554 [Bradyrhizobium ja... 330 2e-88 ref|NP_773672.1| cyclic NTP-binding protein [Bradyrhizobium japo... 269 3e-70 ref|NP_773630.1| hypothetical protein blr6990 [Bradyrhizobium ja... 246 4e-63 ref|YP_001683072.1| Crp/FNR family transcriptional regulator [Ca... 172 5e-41 ref|YP_002131629.1| transcriptional regulator(cAMP-binding) [Phe... 172 7e-41 >ref|NP_772194.1| hypothetical protein blr5554 [Bradyrhizobium japonicum USDA 110] dbj|BAC50819.1| blr5554 [Bradyrhizobium japonicum USDA 110] Length = 263 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 164/252 (65%), Positives = 198/252 (78%), Gaps = 6/252 (2%) Query: 1 MERRSSIGNRLLAALPPADFDLLAPHLRKVSLERDVVLVRSGDLVEQIFFPCTALIAFVM 60 MER + +GNRLLAALPPADF LLAPHLRKV L D VLVRSGD +E ++FPC+ IA +M Sbjct: 2 MERATRVGNRLLAALPPADFALLAPHLRKVPLLHDAVLVRSGDRIEHLYFPCSGAIALIM 61 Query: 61 DMPNGQAVATTMIGNEGAAGILSTLRSIRSPMTAVVRVAGTTWQISPARFHAALAHSHAL 120 ++PNGQ AT +IGN+GA G+++ L +RSP+TAVVRVAGT QISPARF AAL S A+ Sbjct: 62 ELPNGQTAATAVIGNDGAVGLMTALGPVRSPLTAVVRVAGTALQISPARFQAALERSPAI 121 Query: 121 ASAVQLHMRSLLVQFQHIAACNALHSVEARLARWLLQVHDQI-GDDTLPLTQETLSELLG 179 A+AVQ+ R+++ QF H+AACNALHSVEARLARWLL +HD+ G D LPLTQETLSELLG Sbjct: 122 ANAVQIVTRAMMTQFLHVAACNALHSVEARLARWLLHIHDRTDGGDILPLTQETLSELLG 181 Query: 180 VRRTTVTHVVHKLRASGAIRSNRRSSIEVDRPRLESAACECYEIMRGRIDRIVSAEGIR- 238 VRRTTVTHVV LRAS AI+SNRR +E+DR RLE ACECY++M RIDRIVS + +R Sbjct: 182 VRRTTVTHVVSALRASRAIKSNRRGQLEIDRQRLEVVACECYKVMSRRIDRIVSQDAVRL 241 Query: 239 ----SSGHGAPP 246 + +G PP Sbjct: 242 LHAAPARNGCPP 253 >ref|NP_773672.1| cyclic NTP-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52297.1| bll7032 [Bradyrhizobium japonicum USDA 110] Length = 274 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/232 (59%), Positives = 175/232 (75%) Query: 4 RSSIGNRLLAALPPADFDLLAPHLRKVSLERDVVLVRSGDLVEQIFFPCTALIAFVMDMP 63 R+ +GNRLLAALPPAD LL PH +KVS E D VLVRSGD ++ +FFP + IAF++DMP Sbjct: 14 RAGVGNRLLAALPPADLGLLTPHFQKVSFEPDTVLVRSGDELDPVFFPHSGAIAFMLDMP 73 Query: 64 NGQAVATTMIGNEGAAGILSTLRSIRSPMTAVVRVAGTTWQISPARFHAALAHSHALASA 123 +GQ VATT+IG EGA S L S +TAV RVAGT QIS ARF AA A S A+ + Sbjct: 74 DGQTVATTLIGREGALASFSALGPSLSSVTAVARVAGTASQISAARFRAAYARSEAIRNV 133 Query: 124 VQLHMRSLLVQFQHIAACNALHSVEARLARWLLQVHDQIGDDTLPLTQETLSELLGVRRT 183 VQ+H+R+LL+Q QH+AACNALH V+ R+ARWLLQ+HD++ D LP+TQE L++LLGVRRT Sbjct: 134 VQVHVRALLLQLQHVAACNALHLVDGRMARWLLQLHDRVPSDLLPVTQEALAQLLGVRRT 193 Query: 184 TVTHVVHKLRASGAIRSNRRSSIEVDRPRLESAACECYEIMRGRIDRIVSAE 235 T T + KLRA+GA+ S+RR +E+DR RLE AC+CY +M+ +IDR+ E Sbjct: 194 TATLTMSKLRAAGAVPSDRRGFVEIDRARLERVACDCYALMQDKIDRMYCQE 245 >ref|NP_773630.1| hypothetical protein blr6990 [Bradyrhizobium japonicum USDA 110] dbj|BAC52255.1| blr6990 [Bradyrhizobium japonicum USDA 110] Length = 247 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/239 (53%), Positives = 164/239 (68%) Query: 1 MERRSSIGNRLLAALPPADFDLLAPHLRKVSLERDVVLVRSGDLVEQIFFPCTALIAFVM 60 M S IGNRLLA LP AD DLLAP L V+L+RD V+ R+GD E + FP + I+ ++ Sbjct: 1 MTLSSGIGNRLLAGLPAADLDLLAPDLEMVALDRDSVVSRAGDQTEHVLFPHSGAISVMI 60 Query: 61 DMPNGQAVATTMIGNEGAAGILSTLRSIRSPMTAVVRVAGTTWQISPARFHAALAHSHAL 120 DM NGQ VA+ IG EGA G LS L + +TA+VR AGT +I +RFHAA + S A+ Sbjct: 61 DMANGQTVASAAIGREGAVGTLSVLGPSPAAVTAIVRAAGTASRIPASRFHAAFSRSPAI 120 Query: 121 ASAVQLHMRSLLVQFQHIAACNALHSVEARLARWLLQVHDQIGDDTLPLTQETLSELLGV 180 AVQ+H +++L+Q Q ACNALHSV+AR+ARWLL + D++ D LPLTQE LS++LGV Sbjct: 121 RHAVQIHFKAMLIQLQIGGACNALHSVQARMARWLLHLRDRVDHDVLPLTQEALSQILGV 180 Query: 181 RRTTVTHVVHKLRASGAIRSNRRSSIEVDRPRLESAACECYEIMRGRIDRIVSAEGIRS 239 RRTTVT ++ LRASGAI S RR IE+D RL + ACEC + MR I+ I S +S Sbjct: 181 RRTTVTLLMRNLRASGAIISERRGEIEIDPSRLAAVACECRDTMRLEIEGIFSMNATQS 239 >ref|YP_001683072.1| Crp/FNR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ70574.1| transcriptional regulator, Crp/Fnr family [Caulobacter sp. K31] Length = 231 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 134/226 (59%) Query: 7 IGNRLLAALPPADFDLLAPHLRKVSLERDVVLVRSGDLVEQIFFPCTALIAFVMDMPNGQ 66 + NRLLAALPPADF LL+ H+ LER + GD +E ++FP +I+ + M NG Sbjct: 1 MKNRLLAALPPADFALLSAHISHQELERGRHIYDPGDSMEAVYFPHDCVISLMTLMENGA 60 Query: 67 AVATTMIGNEGAAGILSTLRSIRSPMTAVVRVAGTTWQISPARFHAALAHSHALASAVQL 126 A+ + +G EGA G+++ + +S + A+V+ G +IS A H A S AL V Sbjct: 61 AIESAPVGREGALGLMAAVGPRQSLVRAIVQAPGNASRISAAALHDAWTRSAALRDLVDR 120 Query: 127 HMRSLLVQFQHIAACNALHSVEARLARWLLQVHDQIGDDTLPLTQETLSELLGVRRTTVT 186 H +L ACNALH VEAR RWLL D+I DT+ LTQE L+++LGV+RTTVT Sbjct: 121 HNEALFGHTIQSVACNALHGVEARFCRWLLSCRDRIDSDTINLTQEFLADMLGVQRTTVT 180 Query: 187 HVVHKLRASGAIRSNRRSSIEVDRPRLESAACECYEIMRGRIDRIV 232 L+A G IR R +DR LE++ACECY ++R +R++ Sbjct: 181 AAAGSLQAKGLIRYRRGVVDILDRSGLEASACECYAVVRRGYERLL 226 >ref|YP_002131629.1| transcriptional regulator(cAMP-binding) [Phenylobacterium zucineum HLK1] gb|ACG79200.1| transcriptional regulator(cAMP-binding) [Phenylobacterium zucineum HLK1] Length = 235 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 133/227 (58%) Query: 6 SIGNRLLAALPPADFDLLAPHLRKVSLERDVVLVRSGDLVEQIFFPCTALIAFVMDMPNG 65 ++ N LL ALP D+ LLAPHL +V LER +L GD +E ++FP +I+ + M NG Sbjct: 7 ALQNSLLEALPADDYALLAPHLAQVELERGRLLYDPGDPIESVYFPHDGVISLMTLMDNG 66 Query: 66 QAVATTMIGNEGAAGILSTLRSIRSPMTAVVRVAGTTWQISPARFHAALAHSHALASAVQ 125 A+ + IG EGA G+++ + +S A+V+ +IS R H A + S L V Sbjct: 67 AAIESATIGPEGALGLMAAVAPRQSLSRALVQTPLRAARISAERLHEAWSRSARLKDLVD 126 Query: 126 LHMRSLLVQFQHIAACNALHSVEARLARWLLQVHDQIGDDTLPLTQETLSELLGVRRTTV 185 H +L ACNALHSVEAR RWLL HD+I DT+ LTQE L+++LGV+RTTV Sbjct: 127 RHTEALFGHAIQSVACNALHSVEARFCRWLLTCHDRISTDTVALTQEFLADMLGVQRTTV 186 Query: 186 THVVHKLRASGAIRSNRRSSIEVDRPRLESAACECYEIMRGRIDRIV 232 T V L+ G IR R +DR LE+ ACECY ++R R++ Sbjct: 187 TAVARSLQEKGLIRYRRGVVDILDRGGLETLACECYGVIRRNYHRLL 233