BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0003.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltran... 400 e-110 ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltran... 397 e-109 ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum... 397 e-108 ref|YP_002289450.1| ribosomal RNA large subunit methyltransferas... 389 e-106 ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [R... 387 e-106 >ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium sp. ORS 278] sp|A4YSS3.1|RLME_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase emb|CAL76949.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium sp. ORS 278] Length = 231 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/227 (85%), Positives = 208/227 (91%) Query: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAKAKAMGYRSRAAFKLTEIDDKYR 60 MAKDTTGR+HV VK+GGKRKLSSKLWLERQLNDPYVA+AK GYRSRA +KL EIDDKY Sbjct: 1 MAKDTTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYH 60 Query: 61 LLKPGMTVVDLGAAPGGWSQIAAKRTGAADGKGKVVAIDLLEMGEIPGVTFAQLDFLDHD 120 +LKPGMTVVDLGAAPGGWSQIAA+R GA GKGKVVAIDLLEMGEIPGVTFAQLDF D Sbjct: 61 MLKPGMTVVDLGAAPGGWSQIAARRVGAEAGKGKVVAIDLLEMGEIPGVTFAQLDFHAQD 120 Query: 121 APEKLIAMMGGRADIVMSDMAANTTGHRKTDQLRIIGLVETAAHFAGEVLNPGGTFLAKV 180 APEKL M+GGRAD+VMSDMAANTTGHRKTDQLRI+GLVE AAHFAGEVL PGG+FLAK Sbjct: 121 APEKLRTMIGGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFLAKT 180 Query: 181 FQSGADAELVAQLKRDFATVRHVKPAASRQDSSERYVLATGFRGQQQ 227 FQSGADAEL+AQLKRD+ATVRHVKPAASRQDSSERYVLA GFRG +Q Sbjct: 181 FQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRGGEQ 227 >ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium sp. BTAi1] sp|A5EHP2.1|RLME_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase gb|ABQ35686.1| 23S rRNA Um-2552 2'-O-methyltransferase [Bradyrhizobium sp. BTAi1] Length = 231 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/224 (85%), Positives = 206/224 (91%) Query: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAKAKAMGYRSRAAFKLTEIDDKYR 60 MAKDTTGR+HV VK+GGKRKLSSKLWLERQLNDPYVA+AK GYRSRA +KL EIDDKY Sbjct: 1 MAKDTTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYH 60 Query: 61 LLKPGMTVVDLGAAPGGWSQIAAKRTGAADGKGKVVAIDLLEMGEIPGVTFAQLDFLDHD 120 LLKPGMTVVDLGAAPGGWSQIAA+R GA GKGKV+AIDLLEMGE+PGVTF Q+DF D Sbjct: 61 LLKPGMTVVDLGAAPGGWSQIAARRVGAEAGKGKVIAIDLLEMGEVPGVTFTQMDFHAQD 120 Query: 121 APEKLIAMMGGRADIVMSDMAANTTGHRKTDQLRIIGLVETAAHFAGEVLNPGGTFLAKV 180 APEKL AM+GGRAD+VMSDMAANTTGHRKTDQLRI+GLVE AAHFAGEVL PGG+FLAK Sbjct: 121 APEKLRAMLGGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFLAKT 180 Query: 181 FQSGADAELVAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224 FQSGADAEL+AQLKRD+ATVRHVKPAASRQDSSERYVLA GFRG Sbjct: 181 FQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224 >ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum USDA 110] sp|Q89N72.1|RLME_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase dbj|BAC49235.1| cell division protein [Bradyrhizobium japonicum USDA 110] Length = 228 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/224 (87%), Positives = 207/224 (92%) Query: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAKAKAMGYRSRAAFKLTEIDDKYR 60 MAKDTTGRLHV VK+GGKRKLSSKLWLERQLNDPYVAKAKA GYRSRAAFKL EIDDK+R Sbjct: 1 MAKDTTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKFR 60 Query: 61 LLKPGMTVVDLGAAPGGWSQIAAKRTGAADGKGKVVAIDLLEMGEIPGVTFAQLDFLDHD 120 LLK GM VVDLGAAPGGWSQIAAKR G+ DGKGKVVAIDLLEM EI GV FAQLDF+D+D Sbjct: 61 LLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGKGKVVAIDLLEMPEIAGVEFAQLDFMDND 120 Query: 121 APEKLIAMMGGRADIVMSDMAANTTGHRKTDQLRIIGLVETAAHFAGEVLNPGGTFLAKV 180 AP KL AM+GG AD+VMSDMAANTTGHRKTDQLRI+GL+ETAA FA +VL PGGTFLAK Sbjct: 121 APAKLTAMLGGGADVVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFLAKT 180 Query: 181 FQSGADAELVAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224 FQSGADA+L+AQLKRDFATVRHVKPAASRQDSSERYVLATGFRG Sbjct: 181 FQSGADADLLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224 >ref|YP_002289450.1| ribosomal RNA large subunit methyltransferase J [Oligotropha carboxidovorans OM5] ref|YP_004632535.1| ribosomal RNA large subunit methyltransferase E [Oligotropha carboxidovorans OM5] sp|B6JHM9.1|RLME_OLICO RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase gb|ACI93585.1| ribosomal RNA large subunit methyltransferase J [Oligotropha carboxidovorans OM5] gb|AEI02718.1| ribosomal RNA large subunit methyltransferase E [Oligotropha carboxidovorans OM4] gb|AEI06294.1| ribosomal RNA large subunit methyltransferase E [Oligotropha carboxidovorans OM5] Length = 225 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/224 (86%), Positives = 204/224 (91%) Query: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAKAKAMGYRSRAAFKLTEIDDKYR 60 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVA+AK G+RSRAA+KL E+DDKY Sbjct: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAQAKRDGFRSRAAYKLREMDDKYH 60 Query: 61 LLKPGMTVVDLGAAPGGWSQIAAKRTGAADGKGKVVAIDLLEMGEIPGVTFAQLDFLDHD 120 LK G VVDLGAAPGGWSQIAAKR GA G+GKV+AIDLLEMGEIPGVTFAQLDFL D Sbjct: 61 FLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGRGKVIAIDLLEMGEIPGVTFAQLDFLSDD 120 Query: 121 APEKLIAMMGGRADIVMSDMAANTTGHRKTDQLRIIGLVETAAHFAGEVLNPGGTFLAKV 180 APEKL AM+GG ADIVMSDMAANTTGHRKTDQLRI+GLVE+AA FA EVLNPGGTFLAKV Sbjct: 121 APEKLRAMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGTFLAKV 180 Query: 181 FQSGADAELVAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224 FQSGADA L A+LKR+FATVRHVKPAASRQDSSERYVLA GFRG Sbjct: 181 FQSGADATLQAELKRNFATVRHVKPAASRQDSSERYVLAMGFRG 224 >ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas palustris TIE-1] sp|B3QFD2.1|RLME_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase gb|ACF01005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/224 (83%), Positives = 207/224 (92%) Query: 1 MAKDTTGRLHVTVKSGGKRKLSSKLWLERQLNDPYVAKAKAMGYRSRAAFKLTEIDDKYR 60 MAKDTTGR+ VTVKSGG+ KLSSKLWLERQLNDPYVA+AK GYRSRAA+KLTEIDDK+R Sbjct: 1 MAKDTTGRMRVTVKSGGRMKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFR 60 Query: 61 LLKPGMTVVDLGAAPGGWSQIAAKRTGAADGKGKVVAIDLLEMGEIPGVTFAQLDFLDHD 120 LLK GM VVDLGAAPGGWSQ+AAK+ GAADG+GKVVAIDLLEMGE+PGVTFAQLDFLD Sbjct: 61 LLKSGMAVVDLGAAPGGWSQVAAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFLDPS 120 Query: 121 APEKLIAMMGGRADIVMSDMAANTTGHRKTDQLRIIGLVETAAHFAGEVLNPGGTFLAKV 180 APE+L M+GG ADIVMSDMAANTTGHRKTDQLRI+GLVETAA FA EVL PGGTFLAKV Sbjct: 121 APERLREMLGGGADIVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKV 180 Query: 181 FQSGADAELVAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224 FQSGADA L+ +LKRD+A+V+HVKPAASR+DSSERY+LATGFRG Sbjct: 181 FQSGADASLMTELKRDYASVKHVKPAASRKDSSERYLLATGFRG 224