BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0009.p (632 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium ja... 546 e-153 ref|NP_768573.1| hypothetical protein blr1933 [Bradyrhizobium ja... 508 e-141 ref|YP_665786.1| putative methylase/helicase [Mesorhizobium sp. ... 445 e-122 ref|YP_001415629.1| putative methylase/helicase [Xanthobacter au... 442 e-122 ref|YP_002277132.1| putative methylase/helicase [Gluconacetobact... 409 e-112 >ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium japonicum USDA 110] dbj|BAC53563.1| blr8298 [Bradyrhizobium japonicum USDA 110] Length = 723 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 322/447 (72%), Positives = 334/447 (74%), Gaps = 55/447 (12%) Query: 193 ATLLRCIGEYVPPRLSVASTSARPMSASTAPRTVRSYLGRAAAQSVKAPVADPEAVEIVY 252 ATLLR IGE+VPPRLSVAST P+SAS A RTVR YL AAAQ VKA VADPEAV++ Y Sbjct: 325 ATLLRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAY 384 Query: 253 ETTDWTPPEGARLSDAIYEEYRLQSIRIPGAQPHPTKLVQSAAMASVAPPKPSYRPRLPA 312 E TDW PPEGARLSDAIYEEYRLQSIRI GAQ HPTKLVQSAAMASVAPPKPSYRPRLPA Sbjct: 385 EATDWAPPEGARLSDAIYEEYRLQSIRIHGAQAHPTKLVQSAAMASVAPPKPSYRPRLPA 444 Query: 313 NLVSDGILSDAQLETVIYAXGHAALALPSRVRHPVGRGXRLPAALVSEGLLSDAQLETVI 372 NLVSDGILSDAQLETVI Sbjct: 445 NLVSDGILSDAQLETVI------------------------------------------- 461 Query: 373 YAGEAHGNYLAGAWTVDETFDLVTAGRDDAPNAVRFRRGFMLGDGTGAGKGRQAAGIILD 432 YAGEAHGNYLAGAWTVDETFDLV A RDDAPNAVRFRRGFMLGDGTGAGKGRQ+AGIILD Sbjct: 462 YAGEAHGNYLAGAWTVDETFDLVAAARDDAPNAVRFRRGFMLGDGTGAGKGRQSAGIILD 521 Query: 433 NWLHGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGREIRLAEGVLFLTYA 492 NWL GR KAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQG +IRLAEGVLFLTYA Sbjct: 522 NWLQGRCKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGYDIRLAEGVLFLTYA 581 Query: 493 AVRRPRREAFARPADRSMVGLRLRRRHHFRREPCHAECRWRQGRAGRCRALAAGACXSRR 552 AVRRPRREAFARPAD SMVGLRLRRRHHFRREPCHAECRWRQGRAGRCRALAAGAC Sbjct: 582 AVRRPRREAFARPADCSMVGLRLRRRHHFRREPCHAECRWRQGRAGRCRALAAGACRLAS 641 Query: 553 WRCSPAIFARSVSILHARSPMTVSNMSWSSTSSPTSSGASTTPTPVP-------SASSGR 605 C+ A R + + R S + +P + G P GR Sbjct: 642 SACA-AQCPRRLCLGDRRHHRPQSRLR----PAPRAVGRRGFSVRHPRRVRRGDRGGRGR 696 Query: 606 CDGGALSRSSFARSLHRPLAFLRRRRV 632 CDGGALSRSSFARSLHRPLAFLRRRRV Sbjct: 697 CDGGALSRSSFARSLHRPLAFLRRRRV 723 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD 60 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD Sbjct: 208 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD 267 Query: 61 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL 120 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL Sbjct: 268 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL 327 Query: 121 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT 180 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT Sbjct: 328 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT 387 Query: 181 DWAPPEGARLSDA 193 DWAPPEGARLSDA Sbjct: 388 DWAPPEGARLSDA 400 >ref|NP_768573.1| hypothetical protein blr1933 [Bradyrhizobium japonicum USDA 110] gb|AAG60912.1|AF322013_31 ID495 [Bradyrhizobium japonicum] dbj|BAC47198.1| blr1933 [Bradyrhizobium japonicum USDA 110] Length = 683 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 275/356 (77%), Positives = 285/356 (80%), Gaps = 43/356 (12%) Query: 193 ATLLRCIGEYVPPRLSVASTSARPMSASTAPRTVRSYLGRAAAQSVKAPVADPEAVEIVY 252 ATLLR IGE VPPRLSVAST A PMS S+APRTVR YL A QSV A VADPEAV++ Y Sbjct: 324 ATLLRWIGERVPPRLSVASTGALPMSVSSAPRTVRGYLAPATTQSVSASVADPEAVDLAY 383 Query: 253 ETTDWTPPEGARLSDAIYEEYRLQSIRIPGAQPHPTKLVQSAAMASVAPPKPSYRPRLPA 312 ET DW PPEGA LSDAIYEEYRLQSIRIPGAQ HPTKLVQSAAMASV PPKPSYRPRL Sbjct: 384 ETFDWIPPEGACLSDAIYEEYRLQSIRIPGAQAHPTKLVQSAAMASVVPPKPSYRPRL-- 441 Query: 313 NLVSDGILSDAQLETVIYAXGHAALALPSRVRHPVGRGXRLPAALVSEGLLSDAQLETVI 372 PA+LVS+G+LSDAQLETVI Sbjct: 442 -----------------------------------------PASLVSDGILSDAQLETVI 460 Query: 373 YAGEAHGNYLAGAWTVDETFDLVTAGRDDAPNAVRFRRGFMLGDGTGAGKGRQAAGIILD 432 YAGEAH +YLAG+WTVDETFDLV A RDDAPNAVRFRRGFMLGDGTGAGKGRQ+AGIILD Sbjct: 461 YAGEAHVDYLAGSWTVDETFDLVAAARDDAPNAVRFRRGFMLGDGTGAGKGRQSAGIILD 520 Query: 433 NWLHGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGREIRLAEGVLFLTYA 492 NWL GRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQG EIRLAEGVLFLTY Sbjct: 521 NWLQGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGCEIRLAEGVLFLTYT 580 Query: 493 AVRRPRREAFARPADRSMVGLRLRRRHHFRREPCHAECRWRQGRAGRCRALAAGAC 548 VRRPRREAFARPAD SMV LRLRRRHHFRREPCHAECRW QGRAGRCRALAAG+C Sbjct: 581 TVRRPRREAFARPADCSMVELRLRRRHHFRREPCHAECRWGQGRAGRCRALAAGSC 636 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/193 (83%), Positives = 166/193 (86%), Gaps = 1/193 (0%) Query: 1 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD 60 VVP VLMNPPFSAMANVSGRM DTAYRHIASALARLADGGRL TISGAN SP+ASAW D Sbjct: 208 VVPGVVLMNPPFSAMANVSGRMPDTAYRHIASALARLADGGRL-TISGANFSPDASAWRD 266 Query: 61 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL 120 A RLQER RVVFTAAIAGAVYAKHGTTIETRLTVIDK PA DP+ FP SPG+APDVATL Sbjct: 267 ALVRLQERSRVVFTAAIAGAVYAKHGTTIETRLTVIDKAPADDPNVFPESPGVAPDVATL 326 Query: 121 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT 180 LRWIGE VPPRLSVASTG LP+S S A RTVRGYLA A Q V ASVADPEAVDLAYE Sbjct: 327 LRWIGERVPPRLSVASTGALPMSVSSAPRTVRGYLAPATTQSVSASVADPEAVDLAYETF 386 Query: 181 DWAPPEGARLSDA 193 DW PPEGA LSDA Sbjct: 387 DWIPPEGACLSDA 399 >ref|YP_665786.1| putative methylase/helicase [Mesorhizobium sp. BNC1] gb|ABG61139.1| putative methylase/helicase [Chelativorans sp. BNC1] Length = 1498 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 266/501 (53%), Positives = 308/501 (61%), Gaps = 94/501 (18%) Query: 1 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD 60 + PS LMNPPF+ A+V G ++D A+RH+ SA ARL GGRLV I+G +SP+ W Sbjct: 211 IDPSVALMNPPFTVGAHVDGHVSDAAWRHLRSAFARLRPGGRLVAITGTGLSPDNPKWRP 270 Query: 61 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL 120 AF RLQ++GRVVFTAAI G VYA+HGTT ETRLTVIDK PAADPS F AS G APDV TL Sbjct: 271 AFERLQQQGRVVFTAAIDGRVYARHGTTAETRLTVIDKSPAADPSRFFASRGKAPDVETL 330 Query: 121 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT 180 L W+ + VPPR + G P S ++ L AAA S Sbjct: 331 LSWVSD-VPPR----TPGSYPDSIGALTNSI---LRDAAAGMTSRS-------------- 368 Query: 181 DWAPPEGARLSDATLLRCIGEYVPPRLSVASTSARPMSASTAPRTVRS-YLGRAAAQSVK 239 R G + +VAS R +A A + RS LG ++V Sbjct: 369 ----------------RAAGSHT----AVASQDIRK-AAQPANKIARSARLG--PIEAVN 405 Query: 240 APVADPEAVEIVYETTDWTPPEGARLSDAIYEEYRLQSIRIPGAQPHPTKLVQSAAMASV 299 AP ++ + YE DWTP EG RLSD+IYE Y LQSI IPGAQPHPT LVQSAAMA+V Sbjct: 406 AP-----SIPLAYELRDWTPEEGGRLSDSIYEPYALQSIHIPGAQPHPTPLVQSAAMAAV 460 Query: 300 APPKPSYRPRLPANLVSDGILSDAQLETVIYAXGHAALALPSRVRHPVGRGXRLPAALVS 359 APP+PSYRP L P A+VS Sbjct: 461 APPRPSYRPVL-------------------------------------------PDAIVS 477 Query: 360 EGLLSDAQLETVIYAGEAHGNYLAGAWTVDETFDLVTAGRDDAPNAVRFRRGFMLGDGTG 419 EGLLSDAQLE+VIYAGEAH +LAGAWTVDET D+V+A + A NAVRFRRG+ LGDGTG Sbjct: 478 EGLLSDAQLESVIYAGEAHSGHLAGAWTVDETCDVVSAAPESAENAVRFRRGWFLGDGTG 537 Query: 420 AGKGRQAAGIILDNWLHGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGRE 479 GKGRQ AGIILDNWL GRR+AVWISKSDKLLEDAQRDWSALG ERLLV PLSR+ QG Sbjct: 538 CGKGRQVAGIILDNWLQGRRRAVWISKSDKLLEDAQRDWSALGEERLLVQPLSRYRQGTP 597 Query: 480 IRLAEGVLFLTYAAVRRPRRE 500 IRLAEG+LF TYA +R R+ Sbjct: 598 IRLAEGILFTTYATLRSQERD 618 >ref|YP_001415629.1| putative methylase/helicase [Xanthobacter autotrophicus Py2] gb|ABS65972.1| putative methylase/helicase [Xanthobacter autotrophicus Py2] Length = 1440 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 258/499 (51%), Positives = 297/499 (59%), Gaps = 121/499 (24%) Query: 2 VPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHDA 61 VPS VLMNPPFS MANV GRMAD AYRH+ASAL RLA GGRLV I+GAN P+A AW DA Sbjct: 202 VPSVVLMNPPFSVMANVIGRMADAAYRHVASALNRLAPGGRLVAITGANFGPDAPAWRDA 261 Query: 62 FARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATLL 121 FARLQE GRV+FTA + GAVYA+HGT+I+TRLTVIDK+PA DPS FPASPGMAPDVATLL Sbjct: 262 FARLQEHGRVMFTATVDGAVYARHGTSIDTRLTVIDKLPAEDPSFFPASPGMAPDVATLL 321 Query: 122 RWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLAS-AAAQPVKASVADPEAVDLAYEAT 180 W+ VPPRL A V +++ A +T RGY + AA +PV A + PE V+L YE Sbjct: 322 HWVETQVPPRLPAALPKVTASASTAAPKTARGYHSRPAAMRPVAAPASAPEGVELTYETL 381 Query: 181 DWAPPEGARLSDATLLRCIGEYVPPRLSVASTSARPMSASTAPRTVRSYLGRAAAQSVKA 240 DW PPEG RLSD+ EY A QS++ Sbjct: 382 DWTPPEGVRLSDS----IYEEY-------------------------------ALQSLRI 406 Query: 241 PVADPEAVEIVYETTDWTPPEGARLSDAIYEEYRLQSIRIPGAQPHPTKLVQSAAMASVA 300 P A P ++V + S+ A P PT Sbjct: 407 PGAQPHPTKLVQSAA-------------------MASV----APPRPT------------ 431 Query: 301 PPKPSYRPRLPANLVSDGILSDAQLETVIYAXGHAALALPSRVRHPVGRGXRLPAALVSE 360 YRP LPA++ LSDAQLETV+Y Sbjct: 432 -----YRPTLPADIHER--LSDAQLETVVY------------------------------ 454 Query: 361 GLLSDAQLETVIYAGEAHGNYLAGAWTVDETFDLVTAGRDDAPNAVRFRRGFMLGDGTGA 420 AGEAH +YL+GAWTVD T+D V+A +DA AVRFRRGFMLGDGTGA Sbjct: 455 -------------AGEAHADYLSGAWTVDATYDNVSAAPEDATGAVRFRRGFMLGDGTGA 501 Query: 421 GKGRQAAGIILDNWLHGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGREI 480 GKGRQ+AGIILDNWL GRRKAVWISKSDKL+EDAQRDWSALGMERLL+TPLSRF QG++I Sbjct: 502 GKGRQSAGIILDNWLRGRRKAVWISKSDKLIEDAQRDWSALGMERLLITPLSRFAQGKQI 561 Query: 481 RLAEGVLFLTYAAVRRPRR 499 L EGVLF TYA +R R Sbjct: 562 TLTEGVLFTTYATLRSDDR 580 >ref|YP_002277132.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5] gb|ACI52517.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 1440 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/306 (68%), Positives = 229/306 (74%), Gaps = 43/306 (14%) Query: 194 TLLRCIGEYVPPRLSVASTSARPMSASTAPRTVRSYLGRAAAQSVKAPVADPEAVEIVYE 253 TLL IGE VP R ++ ST + P+SA+ APRTVR YL RA A S K VADPEA+++ YE Sbjct: 323 TLLGWIGERVPARQTITSTGSLPVSATPAPRTVRGYLARAGADSAKPSVADPEAIDLAYE 382 Query: 254 TTDWTPPEGARLSDAIYEEYRLQSIRIPGAQPHPTKLVQSAAMASVAPPKPSYRPRLPAN 313 T DWTPP+GARLSDAIYEEYRLQSI +P A+ HPTKLVQSAAMASVAPPKPSYRPRL Sbjct: 383 TIDWTPPDGARLSDAIYEEYRLQSIWLPAAKAHPTKLVQSAAMASVAPPKPSYRPRL--- 439 Query: 314 LVSDGILSDAQLETVIYAXGHAALALPSRVRHPVGRGXRLPAALVSEGLLSDAQLETVIY 373 PA + +G+LSDAQLETVIY Sbjct: 440 ----------------------------------------PAHIAGDGILSDAQLETVIY 459 Query: 374 AGEAHGNYLAGAWTVDETFDLVTAGRDDAPNAVRFRRGFMLGDGTGAGKGRQAAGIILDN 433 AGEAHG+YLAGAWTVDETF LVTA RDDAPNAVRFRRGFMLGDGTGAGKGRQ+AGIILDN Sbjct: 460 AGEAHGDYLAGAWTVDETFHLVTAARDDAPNAVRFRRGFMLGDGTGAGKGRQSAGIILDN 519 Query: 434 WLHGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGREIRLAEGVLFLTYAA 493 WL GRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQG+ I L EG+LFLTYA Sbjct: 520 WLQGRRKAVWISKSDKLLEDAQRDWSALGMERLLVTPLSRFPQGKPITLTEGILFLTYAT 579 Query: 494 VRRPRR 499 +R R Sbjct: 580 LRSDDR 585 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 150/193 (77%), Positives = 160/193 (82%) Query: 1 VVPSFVLMNPPFSAMANVSGRMADTAYRHIASALARLADGGRLVTISGANVSPEASAWHD 60 V PS VLMNPPFSAMANVSGRMAD AYRHIASALARLADGGRLV I+GA+ SPE W D Sbjct: 205 VAPSVVLMNPPFSAMANVSGRMADAAYRHIASALARLADGGRLVAITGASFSPELPLWRD 264 Query: 61 AFARLQERGRVVFTAAIAGAVYAKHGTTIETRLTVIDKVPAADPSAFPASPGMAPDVATL 120 F RLQ+RGRVVFTAAIAG+VYAKHGTTIETRLTVIDK PA DP FP SPG+APDV TL Sbjct: 265 CFVRLQKRGRVVFTAAIAGSVYAKHGTTIETRLTVIDKAPADDPGRFPESPGIAPDVTTL 324 Query: 121 LRWIGEHVPPRLSVASTGVLPVSASPARRTVRGYLASAAAQPVKASVADPEAVDLAYEAT 180 L WIGE VP R ++ STG LPVSA+PA RTVRGYLA A A K SVADPEA+DLAYE Sbjct: 325 LGWIGERVPARQTITSTGSLPVSATPAPRTVRGYLARAGADSAKPSVADPEAIDLAYETI 384 Query: 181 DWAPPEGARLSDA 193 DW PP+GARLSDA Sbjct: 385 DWTPPDGARLSDA 397