BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0008.p         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium ja...    98   4e-19
ref|NP_768573.1| hypothetical protein blr1933 [Bradyrhizobium ja...    93   2e-17
ref|YP_002277132.1| putative methylase/helicase [Gluconacetobact...    91   5e-17
ref|ZP_08666338.1| methylase/helicase [Paracoccus sp. TRP]             91   6e-17
ref|ZP_07025685.1| methylase/helicase [Afipia sp. 1NLS2] >gi|298...    91   6e-17

>ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53563.1| blr8298 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 1   VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSVVLMNPPFXS 51
           VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPS VLMNPPF +
Sbjct: 171 VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSFVLMNPPFSA 221


>ref|NP_768573.1| hypothetical protein blr1933 [Bradyrhizobium japonicum USDA 110]
 gb|AAG60912.1|AF322013_31 ID495 [Bradyrhizobium japonicum]
 dbj|BAC47198.1| blr1933 [Bradyrhizobium japonicum USDA 110]
          Length = 683

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 1   VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSVVLMNPPFXS 51
           VLNELA+TRA LLSSLFPA+SVTRFDAAQIDDHLDP VVP VVLMNPPF +
Sbjct: 171 VLNELAETRAALLSSLFPAISVTRFDAAQIDDHLDPPVVPGVVLMNPPFSA 221


>ref|YP_002277132.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl
           5]
 gb|ACI52517.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1440

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 47/51 (92%)

Query: 1   VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSVVLMNPPFXS 51
           +LNELA+TRA LLSSLFPA++VTRFDAAQIDDHLDP V PSVVLMNPPF +
Sbjct: 168 MLNELAETRAGLLSSLFPAIAVTRFDAAQIDDHLDPAVAPSVVLMNPPFSA 218


>ref|ZP_08666338.1| methylase/helicase [Paracoccus sp. TRP]
          Length = 1344

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 1   VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSVVLMNPPFXS 51
           VLNELA+ RA LLSSLFPA+SVTRFDAAQIDDHLDP +VPSVVLMNPPF +
Sbjct: 68  VLNELAEMRAGLLSSLFPALSVTRFDAAQIDDHLDPALVPSVVLMNPPFSA 118


>ref|ZP_07025685.1| methylase/helicase [Afipia sp. 1NLS2]
 gb|EFI52827.1| methylase/helicase [Afipia sp. 1NLS2]
          Length = 1450

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 1   VLNELAKTRAVLLSSLFPAVSVTRFDAAQIDDHLDPTVVPSVVLMNPPF 49
           VLNELA+TRA LLSSLFPA+SVTRFDAAQIDDHLDP VVP+VVLMNPPF
Sbjct: 172 VLNELAETRASLLSSLFPALSVTRFDAAQIDDHLDPAVVPTVVLMNPPF 220