BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0007.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_07025685.1| methylase/helicase [Afipia sp. 1NLS2] >gi|298...   157   4e-37
ref|YP_004302041.1| Probably methylase/helicase [Polymorphum gil...   151   3e-35
ref|YP_001371711.1| methylase/helicase [Ochrobactrum anthropi AT...   150   5e-35
ref|YP_003547176.1| putative methylase/helicase [Sphingobium jap...   146   8e-34
ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium ja...   146   1e-33

>ref|ZP_07025685.1| methylase/helicase [Afipia sp. 1NLS2]
 gb|EFI52827.1| methylase/helicase [Afipia sp. 1NLS2]
          Length = 1450

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 88/93 (94%)

Query: 3   KIAGLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILADI 62
           KIAGL+PTHTRRS E++ FQQFSTPIPLGLAA+TAAAIT ADRVLEPSAGTGLLAILA+I
Sbjct: 107 KIAGLMPTHTRRSQEAQTFQQFSTPIPLGLAAMTAAAITPADRVLEPSAGTGLLAILAEI 166

Query: 63  AGSGLVLNELAESRATLLSSLFPAISVTRFDXA 95
           AGS LVLNELAE+RA+LLSSLFPA+SVTRFD A
Sbjct: 167 AGSSLVLNELAETRASLLSSLFPALSVTRFDAA 199


>ref|YP_004302041.1| Probably methylase/helicase [Polymorphum gilvum SL003B-26A1]
 gb|ADZ68745.1| Probably methylase/helicase [Polymorphum gilvum SL003B-26A1]
          Length = 1496

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/95 (83%), Positives = 87/95 (91%)

Query: 1   LDKIAGLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA 60
           L KIAGLLPTHTRRS E++ FQQFSTPIPLGLAA+TAAAIT+ADRVLEPSAGTGLLAILA
Sbjct: 153 LGKIAGLLPTHTRRSEEAQAFQQFSTPIPLGLAAVTAAAITSADRVLEPSAGTGLLAILA 212

Query: 61  DIAGSGLVLNELAESRATLLSSLFPAISVTRFDXA 95
           +IAG  LVLNELA++RA LLS LFPA+SVTRFD A
Sbjct: 213 EIAGGTLVLNELADTRAGLLSLLFPALSVTRFDAA 247


>ref|YP_001371711.1| methylase/helicase [Ochrobactrum anthropi ATCC 49188]
 gb|ABS15882.1| probably methylase/helicase [Ochrobactrum anthropi ATCC 49188]
          Length = 1451

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 89/108 (82%), Gaps = 7/108 (6%)

Query: 1   LDKIAGLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA 60
           L KIAGLLPTHTRRS E++ FQQFSTPIPLG AA+TAAAIT ADRVLEPSAGTGLLAILA
Sbjct: 105 LTKIAGLLPTHTRRSEEAQTFQQFSTPIPLGFAAVTAAAITHADRVLEPSAGTGLLAILA 164

Query: 61  DIAGSGLVLNELAESRATLLSSLFPAISVTRFDXA-------PGCSPS 101
           +IAG  L++NELAE RA LLSSLFPA+S+TRFD A       PG  P+
Sbjct: 165 EIAGGALLVNELAEVRAGLLSSLFPALSITRFDAAQIDDHLDPGLIPT 212


>ref|YP_003547176.1| putative methylase/helicase [Sphingobium japonicum UT26S]
 dbj|BAI99153.1| putative methylase/helicase [Sphingobium japonicum UT26S]
          Length = 1445

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 85/95 (89%)

Query: 1   LDKIAGLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA 60
           L KIAGLLPTHTRRS E++ FQQFSTP+PLG AA+TAAA+  ADRVLEPSAGTGLLA+LA
Sbjct: 104 LAKIAGLLPTHTRRSEEAQAFQQFSTPVPLGFAAMTAAALMPADRVLEPSAGTGLLAVLA 163

Query: 61  DIAGSGLVLNELAESRATLLSSLFPAISVTRFDXA 95
           + AG+ L+LNELAE+RA LL+SLFPA+SVTRFD A
Sbjct: 164 ETAGASLILNELAETRADLLASLFPAVSVTRFDAA 198


>ref|NP_774938.1| hypothetical protein blr8298 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53563.1| blr8298 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 92/95 (96%)

Query: 1   LDKIAGLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA 60
           L+KIA LLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA
Sbjct: 104 LEKIARLLPTHTRRSAESEIFQQFSTPIPLGLAALTAAAITAADRVLEPSAGTGLLAILA 163

Query: 61  DIAGSGLVLNELAESRATLLSSLFPAISVTRFDXA 95
           +IAGSGLVLNELA++RA LLSSLFPA+SVTRFD A
Sbjct: 164 EIAGSGLVLNELAKTRAVLLSSLFPAVSVTRFDAA 198