BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0002.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_665769.1| hypothetical protein Meso_4138 [Mesorhizobium s... 520 e-145 ref|YP_001417921.1| hypothetical protein Xaut_3034 [Xanthobacter... 482 e-134 ref|YP_004280384.1| replication primase [Agrobacterium sp. H13-3... 474 e-132 ref|YP_004532791.1| hypothetical protein PP1Y_Lpl2036 [Novosphin... 467 e-130 ref|NP_085837.1| replication primases [Mesorhizobium loti MAFF30... 363 1e-98 >ref|YP_665769.1| hypothetical protein Meso_4138 [Mesorhizobium sp. BNC1] gb|ABG61122.1| Domain of unknown function DUF1738 [Chelativorans sp. BNC1] Length = 320 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 260/286 (90%), Positives = 268/286 (93%) Query: 1 MQSGARADVYTRITAEIIAAIELGAGEWRAPWFHNGTSVARPTNVASGKRYRGVNTVALW 60 M SGARADVYTRITAEIIAAIE AGEWRAPWFHNGTSVARPTNVASGK YRG+NTVAL Sbjct: 5 MHSGARADVYTRITAEIIAAIEQDAGEWRAPWFHNGTSVARPTNVASGKCYRGINTVALL 64 Query: 61 VAATASHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRRM 120 AA A YSDGLWGTYRQW+ AGAQVRKGER+TTVVLWKQVA SEPADDDD D GGHRRM Sbjct: 65 AAAIAGGYSDGLWGTYRQWQAAGAQVRKGERSTTVVLWKQVASSEPADDDDNDVGGHRRM 124 Query: 121 FARAFSVFNVAQVDGYERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTV 180 FARAFSVFNVAQVDGY++PP ++LPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTV Sbjct: 125 FARAFSVFNVAQVDGYDQPPVDLLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTV 184 Query: 181 FMPDFASFRDAASFYAVWLHEDGHASGAKHRLDRDLSDRFGSAAYAAEECCVEILSGLVL 240 FMPDFASFRDAASFY VWLHEDGHASGAKHRLDRDLS RFGSAAYAAEECCVEILSGLVL Sbjct: 185 FMPDFASFRDAASFYGVWLHEDGHASGAKHRLDRDLSGRFGSAAYAAEECCVEILSGLVL 244 Query: 241 ADLGIAHYPRPDHAAYIASWIEVLKDDPRAIFTAAGKAQQAADWMH 286 ADLGIAH+PR DHAAYIASWIEVLKDDPRAIFTAA KAQQAADWMH Sbjct: 245 ADLGIAHHPRADHAAYIASWIEVLKDDPRAIFTAASKAQQAADWMH 290 >ref|YP_001417921.1| hypothetical protein Xaut_3034 [Xanthobacter autotrophicus Py2] gb|ABS68264.1| domain of unknown function DUF1738 [Xanthobacter autotrophicus Py2] Length = 300 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/286 (81%), Positives = 261/286 (91%), Gaps = 1/286 (0%) Query: 6 RADVYTRITAEIIAAIELGAGEWRAPWFHNGTSVARPTNVASGKRYRGVNTVALWVAATA 65 RADVY+R+TAEIIAAIE GAGEWRAPWFHNG+S+ARPTN++SGKRYRG+NT+ALW A A Sbjct: 10 RADVYSRVTAEIIAAIEQGAGEWRAPWFHNGSSIARPTNISSGKRYRGINTLALWAAGFA 69 Query: 66 SHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRRMFARAF 125 + Y DGLWGTY+QW+ AGAQVR+GER+TTVVLW+++ S AD DD D+ HRRMFARAF Sbjct: 70 AGYGDGLWGTYKQWQDAGAQVREGERSTTVVLWREIQASRQADKDDDDDD-HRRMFARAF 128 Query: 126 SVFNVAQVDGYERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTVFMPDF 185 SVFN+AQVDGYERP T VLPE ERLAHAEAFIANLG+KT FGGSEAYY PS+DTVFMP F Sbjct: 129 SVFNIAQVDGYERPATPVLPEGERLAHAEAFIANLGVKTEFGGSEAYYRPSADTVFMPPF 188 Query: 186 ASFRDAASFYAVWLHEDGHASGAKHRLDRDLSDRFGSAAYAAEECCVEILSGLVLADLGI 245 SFRDAASFY VWLHE+GHASGAKHRLDRDLS RFGSAAYAAEECCVEILSGLVLADLGI Sbjct: 189 TSFRDAASFYGVWLHENGHASGAKHRLDRDLSGRFGSAAYAAEECCVEILSGLVLADLGI 248 Query: 246 AHYPRPDHAAYIASWIEVLKDDPRAIFTAAGKAQQAADWMHAQQPR 291 AH+PRPDHAAY+ASW++VLKDDP+AIFTAA KAQQAADWMHAQQP+ Sbjct: 249 AHHPRPDHAAYVASWLKVLKDDPKAIFTAASKAQQAADWMHAQQPQ 294 >ref|YP_004280384.1| replication primase [Agrobacterium sp. H13-3] gb|ADY68006.1| replication primase [Agrobacterium sp. H13-3] Length = 342 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/286 (81%), Positives = 260/286 (90%), Gaps = 1/286 (0%) Query: 6 RADVYTRITAEIIAAIELGAGEWRAPWFHNGTSVARPTNVASGKRYRGVNTVALWVAATA 65 RADVY+R+TAEIIAAIE GAGEW APWFHNGTSVARPTN++SGKRYRG+NT+ALW A A Sbjct: 52 RADVYSRVTAEIIAAIEQGAGEWCAPWFHNGTSVARPTNISSGKRYRGINTLALWAAGFA 111 Query: 66 SHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRRMFARAF 125 + Y DGLWGTY+QW+ AGAQVR+GER+TTVVLW+++ S AD++D D+G HRRMFARAF Sbjct: 112 AGYGDGLWGTYKQWQDAGAQVREGERSTTVVLWREIQSSRQADNEDDDDG-HRRMFARAF 170 Query: 126 SVFNVAQVDGYERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTVFMPDF 185 SVFNVAQVDGYERP T VLPE+ERLAHAEAFIANLG+KT FGGSEAYY PS+DTVFMP F Sbjct: 171 SVFNVAQVDGYERPATPVLPEAERLAHAEAFIANLGVKTEFGGSEAYYRPSADTVFMPPF 230 Query: 186 ASFRDAASFYAVWLHEDGHASGAKHRLDRDLSDRFGSAAYAAEECCVEILSGLVLADLGI 245 SFRDAASFY VWLHE GHASGAKHRLDRDLS RFGSAAYAAEECCVEILSGLVLADLGI Sbjct: 231 TSFRDAASFYGVWLHETGHASGAKHRLDRDLSGRFGSAAYAAEECCVEILSGLVLADLGI 290 Query: 246 AHYPRPDHAAYIASWIEVLKDDPRAIFTAAGKAQQAADWMHAQQPR 291 AH+ RPDHAAY+ASW++VLKDDP+AIF AA KAQQAADWMHAQQP+ Sbjct: 291 AHHARPDHAAYVASWLKVLKDDPKAIFAAASKAQQAADWMHAQQPQ 336 >ref|YP_004532791.1| hypothetical protein PP1Y_Lpl2036 [Novosphingobium sp. PP1Y] ref|YP_004534896.1| hypothetical protein PP1Y_AT22273 [Novosphingobium sp. PP1Y] ref|YP_004535789.1| hypothetical protein PP1Y_AT32258 [Novosphingobium sp. PP1Y] emb|CCA90003.1| conserved hypothetical protein [Novosphingobium sp. PP1Y] emb|CCA93078.1| conserved hypothetical protein [Novosphingobium sp. PP1Y] emb|CCA93971.1| conserved hypothetical protein [Novosphingobium sp. PP1Y] Length = 322 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/289 (80%), Positives = 255/289 (88%), Gaps = 1/289 (0%) Query: 2 QSGARADVYTRITAEIIAAIELGAGEWRAPWFHNGTSVARPTNVASGKRYRGVNTVALWV 61 Q+G RADVYTR+TAEIIAAIE GAG+WRAPW H+GTSVARPTNV+S KRYRG+NTVALWV Sbjct: 6 QAGERADVYTRVTAEIIAAIENGAGDWRAPWHHHGTSVARPTNVSSAKRYRGINTVALWV 65 Query: 62 AATASHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRRMF 121 AA A YSDGLWGTYRQW AGAQVRKGE ATTVV WKQV+ + D D+ +NG HR+MF Sbjct: 66 AAMAGGYSDGLWGTYRQWIEAGAQVRKGEHATTVVFWKQVSSAADDDSDEDENG-HRKMF 124 Query: 122 ARAFSVFNVAQVDGYERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDTVF 181 ARAFSVFNVAQVDGYE PP +LP++ R A AEAFI++LGI TVFGGSEAYY PS+DTV Sbjct: 125 ARAFSVFNVAQVDGYEVPPITMLPDTARHAAAEAFISSLGIATVFGGSEAYYRPSTDTVC 184 Query: 182 MPDFASFRDAASFYAVWLHEDGHASGAKHRLDRDLSDRFGSAAYAAEECCVEILSGLVLA 241 MP F FRDAASFY VWLHE+GHASGAKHRLDRDLS RFGSAAYAAEECCVEILSGLVLA Sbjct: 185 MPPFECFRDAASFYGVWLHENGHASGAKHRLDRDLSGRFGSAAYAAEECCVEILSGLVLA 244 Query: 242 DLGIAHYPRPDHAAYIASWIEVLKDDPRAIFTAAGKAQQAADWMHAQQP 290 DLGIAH+PRPDHAAYIASW+EVLK+D RAIFTAA KAQQAADWMHAQQP Sbjct: 245 DLGIAHHPRPDHAAYIASWLEVLKNDSRAIFTAASKAQQAADWMHAQQP 293 >ref|NP_085837.1| replication primases [Mesorhizobium loti MAFF303099] dbj|BAB54678.1| replication primases [Mesorhizobium loti MAFF303099] Length = 526 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 189/291 (64%), Positives = 222/291 (76%), Gaps = 1/291 (0%) Query: 1 MQSGARADVYTRITAEIIAAIELGAGEWRAPWFHNGTSVARPTNVASGKRYRGVNTVALW 60 M S RADVY R+TAEI+AAIE GAGE+ PW HNG+S A P NVASGK YRGVNT+ALW Sbjct: 228 MASLDRADVYARLTAEIVAAIEAGAGEYVMPWHHNGSSTALPVNVASGKAYRGVNTLALW 287 Query: 61 VAATASHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRR- 119 VAA ++ Y GLWGTYRQW+ GAQVRKGER+TTVV WKQ+ DD D+G RR Sbjct: 288 VAAQSAAYPMGLWGTYRQWQALGAQVRKGERSTTVVFWKQIGGDCDEDDSGSDDGAERRR 347 Query: 120 MFARAFSVFNVAQVDGYERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDT 179 FAR +SVFN AQVDGYE + ER+AHA+AF ANLGI TV+GG+EAYYLPS+D Sbjct: 348 FFARGYSVFNCAQVDGYEPELIVAASDEERIAHADAFYANLGIATVYGGNEAYYLPSADR 407 Query: 180 VFMPDFASFRDAASFYAVWLHEDGHASGAKHRLDRDLSDRFGSAAYAAEECCVEILSGLV 239 V +P F+SFRDAAS Y+V HE HA+ AKHRLDRDLS RFGS AYA EE ++ S ++ Sbjct: 408 VHVPSFSSFRDAASHYSVLFHEGLHATAAKHRLDRDLSGRFGSEAYAMEEIVAQVGSSMI 467 Query: 240 LADLGIAHYPRPDHAAYIASWIEVLKDDPRAIFTAAGKAQQAADWMHAQQP 290 LADL IA PRPD A+YI+SW++VL++D AIFTAA KAQQAADWMHA+QP Sbjct: 468 LADLRIAAGPRPDDASYISSWLKVLRNDSSAIFTAASKAQQAADWMHARQP 518 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 6 RADVYTRITAEIIAAIELGAGEWRAPWFHNGTS--VARPTNVASGKRYRGVNTVALWVAA 63 R D+Y +IT I+A +E G W PW T+ + RP +G Y+G+NT+ LW Sbjct: 9 RVDIYAKITDRIVADLEKGVRPWVKPWSGANTTGRITRPLR-HNGLPYQGINTLLLWSET 67 Query: 64 TASHYSDGLWGTYRQWRHAGAQVRKGERATTVVLWKQVAPSEPADDDDGDNGGHRRMFAR 123 A + +W T++Q G VRKGE + VV + +E D G+ F + Sbjct: 68 VARGFVSPVWMTFKQSVELGGHVRKGETGSMVVYASRFTRTE--TDAQGEEVERGIPFLK 125 Query: 124 AFSVFNVAQVDG----YERPPTNVLPESERLAHAEAFIANLGIKTVFGGSEAYYLPSSDT 179 A++VF Q+DG + P V ER+ +A+AF AN G GG +AY+ P+ D Sbjct: 126 AYTVFCADQIDGLPAQFYGNPAPVADPVERIENADAFFANTGAVIRHGGDKAYFNPALDI 185 Query: 180 VFMPDFASFRDAASFYAVWLHEDG 203 V MP F SFRDA S+YA HE G Sbjct: 186 VQMPAFGSFRDAPSYYATLGHELG 209