BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0020.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769667.1| hypothetical protein bsr3027 [Bradyrhizobium ja...    39   0.28 
ref|YP_001980004.1| glutamine amidotransferase [Rhizobium etli C...    39   0.33 
ref|YP_002977459.1| gamma-glutamyl-gamma-aminobutyrate hydrolase...    38   0.51 
ref|YP_001622752.1| hypothetical protein BSUIS_B0977 [Brucella s...    37   0.72 
ref|NP_357235.1| hypothetical protein Atu3369 [Agrobacterium tum...    37   0.81 

>ref|NP_769667.1| hypothetical protein bsr3027 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48292.1| bsr3027 [Bradyrhizobium japonicum USDA 110]
          Length = 73

 Score = 38.9 bits (89), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)

Query: 71  APQLRVSSSAKTGDPVRRGLSVRAQLSPEYW 101
           AP  + S  AK G PVRRGLSV A LS EYW
Sbjct: 36  APHSQSSYPAKAGYPVRRGLSVLAALSLEYW 66


>ref|YP_001980004.1| glutamine amidotransferase [Rhizobium etli CIAT 652]
 gb|ACE92826.1| probable glutamine amidotransferase protein [Rhizobium etli CIAT
           652]
          Length = 259

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 71  APQLRVSSSAKTG--DPVR----RGLSVRAQLSPEYWADSTGSSRAMKAASGDAMTARCA 124
           AP+L+V ++A+ G  + V     +  +V  Q  PEYWA+S  +S  + AA GDA+    A
Sbjct: 188 APRLQVEATAEDGTVEAVSVIDAKAFAVGVQWHPEYWAESDKTSNRLFAAFGDAVRNYAA 247

Query: 125 SSP 127
           + P
Sbjct: 248 AKP 250


>ref|YP_002977459.1| gamma-glutamyl-gamma-aminobutyrate hydrolase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gb|ACS57920.1| Gamma-glutamyl-gamma-aminobutyrate hydrolase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 259

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 71  APQLRVSSSAKTG--DPVR----RGLSVRAQLSPEYWADSTGSSRAMKAASGDAMTARCA 124
           AP+L+V + A+ G  + V     +  +V  Q  PEYWA++  SS  + AA GDA+ A  A
Sbjct: 188 APRLQVEAIAEDGTVEAVSVIDAKAFAVGVQWHPEYWAETDKSSNQLFAAFGDAVRAYAA 247

Query: 125 S 125
           +
Sbjct: 248 A 248


>ref|YP_001622752.1| hypothetical protein BSUIS_B0977 [Brucella suis ATCC 23445]
 gb|ABY39930.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 295

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 71  APQLRVSSSAKTGD----PVR--RGLSVRAQLSPEYWADSTGSSRAMKAASGDAM 119
           AP+L V + A+ G      V+  RG  V  Q  PEYW  S G SR +  A GDA+
Sbjct: 233 APRLEVEAVAEDGTVEAVSVKNARGFVVGVQWHPEYWVQSDGPSRRIFEAFGDAV 287


>ref|NP_357235.1| hypothetical protein Atu3369 [Agrobacterium tumefaciens str. C58]
 gb|AAK90020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 251

 Score = 37.4 bits (85), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 71  APQLRVSSSAKTG--DPVR----RGLSVRAQLSPEYWADSTGSSRAMKAASGDAMTA 121
           AP+L+V ++A  G  + V     +G +V  Q  PEYWA++   SRA+  A G A+ A
Sbjct: 189 APRLQVEATAADGTIEAVSVIDAKGFAVGVQWHPEYWAETDAPSRALFEAFGKAVHA 245