BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0013.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770776.1| transcriptional regulator [Bradyrhizobium japon... 389 e-106 ref|YP_001630698.1| LysR family transcriptional regulator [Borde... 338 9e-91 gb|AEG06663.1| transcriptional regulator, LysR family [Sinorhizo... 322 4e-86 ref|YP_004614386.1| LysR family transcriptional regulator [Mesor... 322 4e-86 ref|NP_435264.2| Transcriptional regulator, LysR family [Sinorhi... 322 5e-86 >ref|NP_770776.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49401.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/284 (72%), Positives = 242/284 (85%) Query: 12 SLGRSISAQKKKXMSAPMVGKHVRFLEQRLGVRLLHRTTRRQSLTDSGQAYYERCRIVLG 71 LG +A MS PMVGKHVRFLEQRLG RLL+RTTRRQSLTD+GQAYYERCR VL Sbjct: 15 DLGSFAAAADALEMSGPMVGKHVRFLEQRLGARLLNRTTRRQSLTDAGQAYYERCRAVLS 74 Query: 72 EAEAADALASDQSSQPRGRLRVTMPALLGRYCIVPTLLKLAQKYPAIELDLAFGDPIADL 131 AEAADA+ +D+ S+PRGRLRVTMPALLGR+CI P L+KLA+K+ +ELDL+FGDPIAD+ Sbjct: 75 AAEAADAVVADELSEPRGRLRVTMPALLGRHCIAPLLMKLARKHSHLELDLSFGDPIADI 134 Query: 132 MEGGYDLAIRTGELNAQSGVIARRIARQRMVVCGSRAYLKAHGRPRTLDELGRHQLIVYR 191 +EGGYDLAIRTG+L+ QSG+I RRIARQRMVVCG+R+YL+AHG+P+++D+L HQ I+YR Sbjct: 135 VEGGYDLAIRTGDLDNQSGLITRRIARQRMVVCGARSYLRAHGKPKSIDDLAAHQAIIYR 194 Query: 192 RSGRVRPWLFPRDGLAPHEVWPAGRLRFDDLEAIADAAARGLGLAWLPSWLVRERLDTGA 251 RSGRVRPWLFPRDG P E+ PAGRLR DDLEAIADAAA+G+GLAWLP WLVRERL+ GA Sbjct: 195 RSGRVRPWLFPRDGQPPREIMPAGRLRLDDLEAIADAAAQGMGLAWLPCWLVRERLNNGA 254 Query: 252 LVRVLGDNGEFPYDCYALWLPTPRLPLKVRLAVDALAATLPKLV 295 LV + G EF YDC+ALW +PR+PLKVR AVDALAA LPKL+ Sbjct: 255 LVGLFGGQPEFLYDCHALWPRSPRMPLKVRAAVDALAAALPKLM 298 >ref|YP_001630698.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP42429.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 299 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 188/283 (66%), Positives = 221/283 (78%) Query: 13 LGRSISAQKKKXMSAPMVGKHVRFLEQRLGVRLLHRTTRRQSLTDSGQAYYERCRIVLGE 72 LG +A +S PMVGKHVR LE RLG RLL RTTRRQSLTD GQAYYERC++VL E Sbjct: 16 LGSFAAAADALGLSGPMVGKHVRALETRLGARLLIRTTRRQSLTDFGQAYYERCKVVLAE 75 Query: 73 AEAADALASDQSSQPRGRLRVTMPALLGRYCIVPTLLKLAQKYPAIELDLAFGDPIADLM 132 EAADALA+DQ +PRG+LRVTMP GR+C+ P LL+LAQ+YPA+ELDL+F D DL Sbjct: 76 VEAADALAADQLGEPRGKLRVTMPVHFGRHCVAPVLLRLAQQYPALELDLSFNDRFVDLA 135 Query: 133 EGGYDLAIRTGELNAQSGVIARRIARQRMVVCGSRAYLKAHGRPRTLDELGRHQLIVYRR 192 EG YD+AIRTG+L ++GVIARR+ARQRM+VC S AYLK HG+P T+ LG+HQ IVYRR Sbjct: 136 EGDYDIAIRTGDLADKAGVIARRVARQRMIVCASPAYLKTHGQPATVAALGQHQAIVYRR 195 Query: 193 SGRVRPWLFPRDGLAPHEVWPAGRLRFDDLEAIADAAARGLGLAWLPSWLVRERLDTGAL 252 SGRV PWLFP+DG P E+ PA R+R DDL+AIADAA G+GLAWLPSWL+ +RL GAL Sbjct: 196 SGRVSPWLFPKDGHPPEEIVPANRVRMDDLDAIADAATLGMGLAWLPSWLISDRLRMGAL 255 Query: 253 VRVLGDNGEFPYDCYALWLPTPRLPLKVRLAVDALAATLPKLV 295 V +L D F YD YALWL TP+LP KVRLAVDALA LP ++ Sbjct: 256 VALLPDRPAFLYDAYALWLRTPQLPRKVRLAVDALAEALPAMM 298 >gb|AEG06663.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] Length = 299 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 179/284 (63%), Positives = 220/284 (77%) Query: 13 LGRSISAQKKKXMSAPMVGKHVRFLEQRLGVRLLHRTTRRQSLTDSGQAYYERCRIVLGE 72 LG +A + +S PMVGKHVR LE RLGV+L++RTTRRQSLT+ G YYERCR+VL E Sbjct: 16 LGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRQSLTEFGYVYYERCRVVLAE 75 Query: 73 AEAADALASDQSSQPRGRLRVTMPALLGRYCIVPTLLKLAQKYPAIELDLAFGDPIADLM 132 A+AADALASDQ S+PRG+LRVTMP GR+C+ P LL+LA+KYPA+ELDL+F D I DL Sbjct: 76 AQAADALASDQLSEPRGKLRVTMPVHFGRHCVTPVLLELARKYPALELDLSFNDRIIDLA 135 Query: 133 EGGYDLAIRTGELNAQSGVIARRIARQRMVVCGSRAYLKAHGRPRTLDELGRHQLIVYRR 192 E G+DL+IRTG L ++G+IARR+ARQ M+VC S +YL++HG P ++L +H +VYRR Sbjct: 136 EDGFDLSIRTGVLEDRAGLIARRVARQPMIVCASPSYLESHGCPEAPEDLAQHSAVVYRR 195 Query: 193 SGRVRPWLFPRDGLAPHEVWPAGRLRFDDLEAIADAAARGLGLAWLPSWLVRERLDTGAL 252 SG V PWLFPR G + EV P R R DDL+AIADAAARGLGLAWLP WLVR R++ G L Sbjct: 196 SGPVSPWLFPRPGQSSSEVTPFHRFRLDDLDAIADAAARGLGLAWLPYWLVRGRIEAGTL 255 Query: 253 VRVLGDNGEFPYDCYALWLPTPRLPLKVRLAVDALAATLPKLVA 296 VR+L + F YDC+A+WL TP LPLKVR+AVDALAA LP + Sbjct: 256 VRLLPEQPPFLYDCHAVWLQTPHLPLKVRVAVDALAAQLPSFMT 299 >ref|YP_004614386.1| LysR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH90292.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum WSM2075] Length = 300 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 186/286 (65%), Positives = 224/286 (78%), Gaps = 1/286 (0%) Query: 12 SLGRSISAQKKKXMSAPMVGKHVRFLEQRLGVRLLHRTTRRQSLTDSGQAYYERCRIVLG 71 LG +A +S PMVGKHVRFLE+RLGVRL++RTTRRQSLTD G+AYYERCR+VL Sbjct: 15 DLGSFAAAAVALDLSGPMVGKHVRFLEERLGVRLINRTTRRQSLTDFGRAYYERCRVVLA 74 Query: 72 EAEAADALASDQSSQPRGRLRVTMPALLGRYCIVPTLLKLAQKYPAIELDLAFGDPIADL 131 EAEAADALA+DQ S+PRG+LRVTMPA GR+C+ P LL++A++YP +ELDL+ D ADL Sbjct: 75 EAEAADALAADQLSEPRGKLRVTMPAHFGRHCVTPVLLQMARQYPMLELDLSLSDRFADL 134 Query: 132 MEGGYDLAIRTGELNAQSGVIARRIARQRMVVCGSRAYLKAHGRPRTLDELGRHQLIVYR 191 E GYDLAIRTGEL+ ++GVIARR+ARQ MVVC + +YL HG PR +++L HQ IVYR Sbjct: 135 AEDGYDLAIRTGELDDKAGVIARRVARQGMVVCAAPSYLGIHGEPRRIEDLADHQSIVYR 194 Query: 192 RSGR-VRPWLFPRDGLAPHEVWPAGRLRFDDLEAIADAAARGLGLAWLPSWLVRERLDTG 250 R G+ V+PWLF R+G E+ P GRLR DDL+AIADAA G+G+AWLP WLVRER+ G Sbjct: 195 RLGQVVQPWLFAREGQPLQEILPTGRLRLDDLDAIADAAVVGMGIAWLPWWLVRERIRAG 254 Query: 251 ALVRVLGDNGEFPYDCYALWLPTPRLPLKVRLAVDALAATLPKLVA 296 AL +L D YDC+ALWL TP LPLKVRLAVDALA LPKL+A Sbjct: 255 ALAVLLPDQPRHLYDCHALWLQTPHLPLKVRLAVDALATALPKLMA 300 >ref|NP_435264.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gb|AAK64676.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 299 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 179/284 (63%), Positives = 220/284 (77%) Query: 13 LGRSISAQKKKXMSAPMVGKHVRFLEQRLGVRLLHRTTRRQSLTDSGQAYYERCRIVLGE 72 LG +A + +S PMVGKHVR LE RLGV+L++RTTRRQSLT+ G YYERCR+VL E Sbjct: 16 LGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRQSLTEFGYVYYERCRVVLAE 75 Query: 73 AEAADALASDQSSQPRGRLRVTMPALLGRYCIVPTLLKLAQKYPAIELDLAFGDPIADLM 132 A+AADALASDQ S+PRG+LRVTMP GR+C+ P LL+LA+KYPA+ELDL+F D I DL Sbjct: 76 AQAADALASDQLSEPRGKLRVTMPVHFGRHCVTPVLLELARKYPALELDLSFNDRIIDLA 135 Query: 133 EGGYDLAIRTGELNAQSGVIARRIARQRMVVCGSRAYLKAHGRPRTLDELGRHQLIVYRR 192 E G+DL+IRTG L ++G+IARR+ARQ M+VC S +YL++HG P ++L +H +VYRR Sbjct: 136 EDGFDLSIRTGVLEDRAGLIARRVARQPMIVCASPSYLESHGCPEAPEDLAQHAAVVYRR 195 Query: 193 SGRVRPWLFPRDGLAPHEVWPAGRLRFDDLEAIADAAARGLGLAWLPSWLVRERLDTGAL 252 SG V PWLFPR G + EV P R R DDL+AIADAAARGLGLAWLP WLVR R++ G L Sbjct: 196 SGPVSPWLFPRPGQSSSEVTPLHRFRLDDLDAIADAAARGLGLAWLPYWLVRGRIEAGTL 255 Query: 253 VRVLGDNGEFPYDCYALWLPTPRLPLKVRLAVDALAATLPKLVA 296 VR+L + F YDC+A+WL TP LPLKVR+AVDALAA LP + Sbjct: 256 VRLLPEQPPFLYDCHAVWLQTPHLPLKVRVAVDALAAQLPSFMT 299