BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0011.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770782.1| hypothetical protein bll4142 [Bradyrhizobium ja... 840 0.0 ref|YP_001205379.1| hypothetical protein BRADO3358 [Bradyrhizobi... 773 0.0 ref|YP_001239845.1| hypothetical protein BBta_3863 [Bradyrhizobi... 761 0.0 ref|YP_782190.1| hypothetical protein RPE_3277 [Rhodopseudomonas... 741 0.0 ref|YP_570076.1| hypothetical protein RPD_2948 [Rhodopseudomonas... 729 0.0 >ref|NP_770782.1| hypothetical protein bll4142 [Bradyrhizobium japonicum USDA 110] sp|Q89MQ0.1|Y4142_BRAJA RecName: Full=UPF0061 protein bll4142 dbj|BAC49407.1| bll4142 [Bradyrhizobium japonicum USDA 110] Length = 491 Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/491 (84%), Positives = 443/491 (90%), Gaps = 1/491 (0%) Query: 1 MTIHFPFQNTYSALPANFFARVAPTPVASPRLIKLNRPLAVQLGLDPNLLSTAEGAEILA 60 MT+HFPFQN+YSALP +FFARVAPTPVA+PRLIKLNRPLAVQLGLDPN+L T EGAEILA Sbjct: 1 MTVHFPFQNSYSALPDSFFARVAPTPVAAPRLIKLNRPLAVQLGLDPNMLETPEGAEILA 60 Query: 61 GKRLPDGADPIAMAYAGHQFGHFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 GK +PDGADPIAMAYAGHQFG FVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR Sbjct: 61 GKTVPDGADPIAMAYAGHQFGQFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 Query: 121 RGDGRAALGPVLREYIVSEAMFALGIPTTRSLAAVVTGEPVMRETALPGAVLTRVAASHI 180 RGDGRAALGPVLREYIVSEAM+ALGIPTTRSLAAVVTGE V+RETALPGAVLTRVAASHI Sbjct: 121 RGDGRAALGPVLREYIVSEAMYALGIPTTRSLAAVVTGEHVIRETALPGAVLTRVAASHI 180 Query: 181 RVGTFQFFAARGDTEGVRALADHVIARHYPELKDAAQPYHALLAGVVARQAALVARWLLV 240 RVGTFQFFA R DT+ +R LADHVIARHYPEL +PYHALLAGVVARQA LVARWLLV Sbjct: 181 RVGTFQFFAVRRDTDAIRRLADHVIARHYPELLGTERPYHALLAGVVARQAELVARWLLV 240 Query: 241 GFIHGVMNTDNTSISGETIDYGPCAFLDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 GFIHGVMNTDN+SISGETIDYGPCAF+DAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR Sbjct: 241 GFIHGVMNTDNSSISGETIDYGPCAFMDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 Query: 301 LAECLLPLFADEQEKAIEQAQVILGEFPEKFTAAYNAGLRAKVGLFTARDGDEALIQDLL 360 LAECLLPLF +EQEKA+EQAQ ILG FPE F+ AY AGLR KVGLFT RDGDEALIQDLL Sbjct: 301 LAECLLPLFGEEQEKAVEQAQDILGAFPETFSKAYQAGLRKKVGLFTERDGDEALIQDLL 360 Query: 361 DAMAKNAADFTLAFRHLG-EAASDDAADVRAQFTDPAAFDEWAARWRARLALEPQAPAER 419 DAMAKN ADFTL FR LG A A D RA+F DPAAFDEWA RWR RLA EPQ+ AER Sbjct: 361 DAMAKNQADFTLTFRRLGDAAGDPAADDARAEFMDPAAFDEWARRWRERLAAEPQSAAER 420 Query: 420 KAAMQAVNPAFIPRNHRIEAVIAAAVNSDDYAPFEELLTVLARPFEDQPQFAAYADPPLP 479 + AM AVNP FIPRNHR+EAVI AAVN D+YA FEEL+ VLA+P+EDQP +AAYADPPLP Sbjct: 421 QTAMNAVNPLFIPRNHRVEAVIQAAVNDDNYALFEELVKVLAKPYEDQPDYAAYADPPLP 480 Query: 480 EQRVTQTFCGT 490 +QRV QTFCGT Sbjct: 481 DQRVLQTFCGT 491 >ref|YP_001205379.1| hypothetical protein BRADO3358 [Bradyrhizobium sp. ORS 278] sp|A4YTC3.1|Y3358_BRASO RecName: Full=UPF0061 protein BRADO3358 emb|CAL77149.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 491 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/491 (76%), Positives = 423/491 (86%), Gaps = 1/491 (0%) Query: 1 MTIHFPFQNTYSALPANFFARVAPTPVASPRLIKLNRPLAVQLGLDPNLLSTAEGAEILA 60 MT+HFPFQN+Y ALP NFFARVAPTPVA+PRLIKLNRPLA +LGL+P L T EGAEILA Sbjct: 1 MTVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILA 60 Query: 61 GKRLPDGADPIAMAYAGHQFGHFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 GK +P+GA+PIAMAYAGHQFGHFVPQLGDGRA+LLGEV+DR+GVRRDIQLKGSGPTPFSR Sbjct: 61 GKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSR 120 Query: 121 RGDGRAALGPVLREYIVSEAMFALGIPTTRSLAAVVTGEPVMRETALPGAVLTRVAASHI 180 RGDGRAALGPVLREYIVSEAM ALGIPTTRSLAAVVTGE V R TALPGAVLTRVA SHI Sbjct: 121 RGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQVYRGTALPGAVLTRVATSHI 180 Query: 181 RVGTFQFFAARGDTEGVRALADHVIARHYPELKDAAQPYHALLAGVVARQAALVARWLLV 240 RVGTFQ+FAAR D E VR LADHVI RHYP+L +PYHALLA V++RQA L+A WLLV Sbjct: 181 RVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLV 240 Query: 241 GFIHGVMNTDNTSISGETIDYGPCAFLDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 GFIHGVMNTDNTS+SGETIDYGPCAF+DAY+P QVFSSIDE GRYA+ANQPRIA+WNLTR Sbjct: 241 GFIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTR 300 Query: 301 LAECLLPLFADEQEKAIEQAQVILGEFPEKFTAAYNAGLRAKVGLFTARDGDEALIQDLL 360 LAECLLPLF D++++AI++A+ L F +FT A+ AGLR K+GLFT RDGD+ L Q L Sbjct: 301 LAECLLPLFGDDKDQAIKEAETALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALF 360 Query: 361 DAMAKNAADFTLAFRHLGEAA-SDDAADVRAQFTDPAAFDEWAARWRARLALEPQAPAER 419 DAMA ADFTL FR L +AA S D + VRA F DP FDEWAARW+ RLA+EPQ PAER Sbjct: 361 DAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFDEWAARWQQRLAVEPQTPAER 420 Query: 420 KAAMQAVNPAFIPRNHRIEAVIAAAVNSDDYAPFEELLTVLARPFEDQPQFAAYADPPLP 479 +AAM+ VNPAFIPRNHRIEAVI AAV +DDYAPFEEL VLA+P++DQP A YA+PP P Sbjct: 421 RAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQP 480 Query: 480 EQRVTQTFCGT 490 E+RV QTFCGT Sbjct: 481 EERVLQTFCGT 491 >ref|YP_001239845.1| hypothetical protein BBta_3863 [Bradyrhizobium sp. BTAi1] sp|A5EIE5.1|Y3863_BRASB RecName: Full=UPF0061 protein BBta_3863 gb|ABQ35939.1| hypothetical protein BBta_3863 [Bradyrhizobium sp. BTAi1] Length = 491 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/491 (76%), Positives = 418/491 (85%), Gaps = 1/491 (0%) Query: 1 MTIHFPFQNTYSALPANFFARVAPTPVASPRLIKLNRPLAVQLGLDPNLLSTAEGAEILA 60 MT+HFPFQN+Y+ALP NFFARVAPTPVA+PRLIKLNRPLA +LGL+P L TAEGAEILA Sbjct: 1 MTVHFPFQNSYAALPDNFFARVAPTPVAAPRLIKLNRPLAAELGLNPAELETAEGAEILA 60 Query: 61 GKRLPDGADPIAMAYAGHQFGHFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 GK +P+GA+PIAMAYAGHQFGHFVPQLGDGRA+LLGEV+D++GVRRDIQLKGSGPTPFSR Sbjct: 61 GKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDKNGVRRDIQLKGSGPTPFSR 120 Query: 121 RGDGRAALGPVLREYIVSEAMFALGIPTTRSLAAVVTGEPVMRETALPGAVLTRVAASHI 180 RGDGRAALGPVLREYIVSEAM ALGIPTTRSLAAVVTGE V R ALPGAVLTRVA SHI Sbjct: 121 RGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQVYRGIALPGAVLTRVATSHI 180 Query: 181 RVGTFQFFAARGDTEGVRALADHVIARHYPELKDAAQPYHALLAGVVARQAALVARWLLV 240 RVGTFQ+FAAR D E VR LADHVI+RHYP+L +PYHALL V+ARQA L+A WLLV Sbjct: 181 RVGTFQYFAARQDVEAVRRLADHVISRHYPDLAGTERPYHALLDAVIARQAKLIADWLLV 240 Query: 241 GFIHGVMNTDNTSISGETIDYGPCAFLDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 GFIHGVMNTDNTS+SGETIDYGPCAF+D Y+P QVFSSIDE GRYA+ANQPRIALWNLTR Sbjct: 241 GFIHGVMNTDNTSVSGETIDYGPCAFMDGYDPKQVFSSIDEFGRYAFANQPRIALWNLTR 300 Query: 301 LAECLLPLFADEQEKAIEQAQVILGEFPEKFTAAYNAGLRAKVGLFTARDGDEALIQDLL 360 LAECLLPLF D++++AI++A+ L F +FT A+ AGLR K+GLFT +GD+ L Q L Sbjct: 301 LAECLLPLFGDDKDQAIKEAEAALDGFAAQFTDAHQAGLRRKLGLFTQVEGDQPLAQALF 360 Query: 361 DAMAKNAADFTLAFRHLGEAA-SDDAADVRAQFTDPAAFDEWAARWRARLALEPQAPAER 419 DAMA ADFTL FR L +AA S D A VRA F DP DEW RWR RLA EPQ AER Sbjct: 361 DAMAAVKADFTLTFRRLSDAAGSGDDAPVRALFEDPTGLDEWLPRWRQRLADEPQTAAER 420 Query: 420 KAAMQAVNPAFIPRNHRIEAVIAAAVNSDDYAPFEELLTVLARPFEDQPQFAAYADPPLP 479 AAM+ VNPAFIPRNHRIEAVI AAV +DDYAPFEEL VLARP++DQP F+AYA+PP P Sbjct: 421 AAAMRQVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLARPYDDQPAFSAYAEPPQP 480 Query: 480 EQRVTQTFCGT 490 ++RV QTFCGT Sbjct: 481 DERVLQTFCGT 491 >ref|YP_782190.1| hypothetical protein RPE_3277 [Rhodopseudomonas palustris BisA53] gb|ABJ07210.1| protein of unknown function UPF0061 [Rhodopseudomonas palustris BisA53] Length = 525 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/491 (74%), Positives = 421/491 (85%), Gaps = 2/491 (0%) Query: 1 MTIHFPFQNTYSALPANFFARVAPTPVASPRLIKLNRPLAVQLGLDPNLLSTAEGAEILA 60 M+ HFPF N+Y+ LP +FFARVAPT V++PRLIKLNRPLA++LGLDP+ L + EGAEI A Sbjct: 36 MSAHFPFDNSYTRLPDSFFARVAPTAVSAPRLIKLNRPLALELGLDPDRLDSPEGAEIFA 95 Query: 61 GKRLPDGADPIAMAYAGHQFGHFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 G+RLP+GADPIAMAYAGHQFG FVPQLGDGRAILLGE+ID++GVRRDIQLKGSGPTP+SR Sbjct: 96 GRRLPEGADPIAMAYAGHQFGQFVPQLGDGRAILLGELIDQNGVRRDIQLKGSGPTPYSR 155 Query: 121 RGDGRAALGPVLREYIVSEAMFALGIPTTRSLAAVVTGEPVMRETALPGAVLTRVAASHI 180 RGDGRAALGPVLREYIVSEAM ALGIPTTRSLAAV+TG+ V+RET LPGAVLTRVA+SHI Sbjct: 156 RGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVITGDSVVRETMLPGAVLTRVASSHI 215 Query: 181 RVGTFQFFAARGDTEGVRALADHVIARHYPELKDAAQPYHALLAGVVARQAALVARWLLV 240 RVGTFQFFA+RGD +GV+ALADHVIARHYP + + +PY ALL V+ RQA L+ARWLLV Sbjct: 216 RVGTFQFFASRGDRDGVKALADHVIARHYPSIANEERPYLALLDQVIQRQAELIARWLLV 275 Query: 241 GFIHGVMNTDNTSISGETIDYGPCAFLDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 GFIHGVMNTDN SISGETIDYGPCAF+DAY+PA VFSSID+MGRYAY NQP+I LWNLTR Sbjct: 276 GFIHGVMNTDNCSISGETIDYGPCAFMDAYDPATVFSSIDQMGRYAYGNQPQIGLWNLTR 335 Query: 301 LAECLLPLFADEQEKAIEQAQVILGEFPEKFTAAYNAGLRAKVGLFTARDGDEALIQDLL 360 LAECL+PL A++Q++AI A+ LG+F F AY AGLR K+GLFT RD D+ LI+DL Sbjct: 336 LAECLVPLIAEQQDQAIADAEASLGKFSALFNGAYEAGLRRKLGLFTTRDDDKPLIRDLF 395 Query: 361 DAMAKNAADFTLAFRHLGEAASDDAADVRA-QFTDPAAFDEWAARWRARLALEPQAPAER 419 AMA +AADFTL FR + EAA D AD F DP A++ WA RWRARLALEPQ A R Sbjct: 396 TAMAADAADFTLTFRAMSEAAGDATADATGHHFADPLAYETWALRWRARLALEPQDRATR 455 Query: 420 KAAMQAVNPAFIPRNHRIEAVIAAAVNSDDYAPFEELLTVLARPFEDQPQFAAYADPPLP 479 ++AM+AVNPAFIPRNHRI+AVI AAV SDD+APFEELLTVLA P+EDQP+FA YADPP P Sbjct: 456 QSAMRAVNPAFIPRNHRIQAVIDAAV-SDDFAPFEELLTVLATPYEDQPRFAPYADPPKP 514 Query: 480 EQRVTQTFCGT 490 +RV QTFCGT Sbjct: 515 HERVLQTFCGT 525 >ref|YP_570076.1| hypothetical protein RPD_2948 [Rhodopseudomonas palustris BisB5] sp|Q135R4.1|Y2948_RHOPS RecName: Full=UPF0061 protein RPD_2948 gb|ABE40175.1| protein of unknown function UPF0061 [Rhodopseudomonas palustris BisB5] Length = 492 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/492 (73%), Positives = 406/492 (82%), Gaps = 2/492 (0%) Query: 1 MTIHFPFQNTYSALPANFFARVAPTPVASPRLIKLNRPLAVQLGLDPNLLSTAEGAEILA 60 MT+HFPF N+Y+ALP NFFARVAPTPVA+PRLIKLNRPLA +LGLDP+ L + EGAEILA Sbjct: 1 MTVHFPFDNSYAALPDNFFARVAPTPVAAPRLIKLNRPLAERLGLDPDWLDSPEGAEILA 60 Query: 61 GKRLPDGADPIAMAYAGHQFGHFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGPTPFSR 120 G RLP+GA IAMAYAGHQFG FVPQLGDGRAILLGEVIDRDGVRRDIQLKGSG TPFSR Sbjct: 61 GARLPEGAASIAMAYAGHQFGQFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSR 120 Query: 121 RGDGRAALGPVLREYIVSEAMFALGIPTTRSLAAVVTGEPVMRETALPGAVLTRVAASHI 180 GDGRAALGPVLREYIVSEAM ALGIPTTRSLAAV+TGE V+R+ PGAVLTRVA+SHI Sbjct: 121 MGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVLTGERVVRDQIQPGAVLTRVASSHI 180 Query: 181 RVGTFQFFAARGDTEGVRALADHVIARHYPELKDAAQPYHALLAGVVARQAALVARWLLV 240 RVGTFQFFAARGD E VRALADHVIARHYPE A PY ALL GV+ARQA L+ARW+++ Sbjct: 181 RVGTFQFFAARGDREAVRALADHVIARHYPEAAQADAPYLALLEGVIARQADLIARWMMI 240 Query: 241 GFIHGVMNTDNTSISGETIDYGPCAFLDAYNPAQVFSSIDEMGRYAYANQPRIALWNLTR 300 GFIHGVMNTDN SI+GETIDYGPCAF+D ++P VFSSID MGRYA+ NQP IALWNLTR Sbjct: 241 GFIHGVMNTDNCSIAGETIDYGPCAFMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTR 300 Query: 301 LAECLLPLFADEQEKAIEQAQVILGEFPEKFTAAYNAGLRAKVGLFTARDGDEALIQDLL 360 LAECL+PL + +++K +E AQ +LG F E+F A Y AGL AK+GLFT + D L QD L Sbjct: 301 LAECLVPLLSADEDKGVEIAQTVLGGFAERFNATYLAGLAAKLGLFTTQADDAQLSQDFL 360 Query: 361 DAMAKNAADFTLAFRHLGEAASD--DAADVRAQFTDPAAFDEWAARWRARLALEPQAPAE 418 AMAK ADFTL FR L +AA D + VRA F DPAAFD+WA RWR R+ EPQ A Sbjct: 361 AAMAKGRADFTLTFRRLSDAAIDPTELGTVRALFDDPAAFDDWAPRWRQRVTAEPQDGAA 420 Query: 419 RKAAMQAVNPAFIPRNHRIEAVIAAAVNSDDYAPFEELLTVLARPFEDQPQFAAYADPPL 478 R+AAM+AVNPA+IPRNHR+EA I AAV+ DD+ PF ELLTVL PF +QP+F YADPP Sbjct: 421 RQAAMRAVNPAYIPRNHRVEAAIRAAVDKDDFGPFHELLTVLTNPFREQPEFDRYADPPQ 480 Query: 479 PEQRVTQTFCGT 490 P +RV +TFCGT Sbjct: 481 PHERVLETFCGT 492