BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0006.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241084.1| hypothetical protein BBta_5185 [Bradyrhizobi...    75   3e-12
ref|YP_002486363.1| L-carnitine dehydratase/bile acid-inducible ...    39   0.25 
ref|YP_831493.1| L-carnitine dehydratase/bile acid-inducible pro...    35   2.7  
ref|YP_001542825.1| hypothetical protein Haur_0045 [Herpetosipho...    35   4.0  

>ref|YP_001241084.1| hypothetical protein BBta_5185 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37178.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 152

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 9   AKAVAFVA-MASLVATSAVGACKTTLRGELVQAPGDR----KASVGEFLYFYLVEMTPES 63
           A AV  VA  A L   +A  AC  TLRGEL+  PG +    +    + L+F L E+  + 
Sbjct: 14  AFAVVMVAGFAGLGMPAAFAACDATLRGELLPDPGSQFRGFRIRPTKLLFFSLDEIREDR 73

Query: 64  PTGSEKLFQSFVVPNMSKTLPIPFALEIEQPKDCPGELELRVDTKDRDIMRLGTDASSAG 123
                  FQSF V       PIPF L I   KDCP EL L V   DRD   L  +   +G
Sbjct: 74  GDRGAVTFQSFRVTKARTRFPIPFELTIHSSKDCPQELRLSVAGSDRD--GLHYEYPLSG 131

Query: 124 RKTVRLER--FESVPMWGPSF 142
            K +RLE+  FE V +  PSF
Sbjct: 132 SKQIRLEKQEFERVIVHWPSF 152


>ref|YP_002486363.1| L-carnitine dehydratase/bile acid-inducible protein F [Arthrobacter
           chlorophenolicus A6]
 gb|ACL38274.1| L-carnitine dehydratase/bile acid-inducible protein F [Arthrobacter
           chlorophenolicus A6]
          Length = 408

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%)

Query: 6   TSLAKAVAFVAMASLVATSAVGACKTTLRGELVQAPGDRKASVGEFLYFYLVEMTPESPT 65
           T   K V    +ASL+   A    + T+ GE+ QA G+   S+  +  F   + + +   
Sbjct: 200 TGQGKVVRTSLLASLIGVHAFQGTRATVAGEVPQAQGNHHPSIAPYGLFNCKDGSVQISV 259

Query: 66  GSEKLFQSF 74
           GSEKL+ SF
Sbjct: 260 GSEKLWASF 268


>ref|YP_831493.1| L-carnitine dehydratase/bile acid-inducible protein F [Arthrobacter
           sp. FB24]
 gb|ABK03393.1| L-carnitine dehydratase/bile acid-inducible protein F [Arthrobacter
           sp. FB24]
          Length = 415

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 35/69 (50%)

Query: 6   TSLAKAVAFVAMASLVATSAVGACKTTLRGELVQAPGDRKASVGEFLYFYLVEMTPESPT 65
           T   + V    +A+L+   A    + T+ GE+ +A G+   S+  +  F+  +   +   
Sbjct: 203 TGQGQIVRTSLLAALIGVHAFQGTRATVAGEVPKAQGNHHPSIAPYGLFHCRQGRVQISV 262

Query: 66  GSEKLFQSF 74
           GSEKL+++F
Sbjct: 263 GSEKLWKTF 271


>ref|YP_001542825.1| hypothetical protein Haur_0045 [Herpetosiphon aurantiacus DSM 785]
 gb|ABX02697.1| hypothetical protein Haur_0045 [Herpetosiphon aurantiacus DSM 785]
          Length = 1012

 Score = 35.0 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 42  GDRKASVGEFLY---FYLVEMTP--ESPTGSEKL-FQSFVVPNMSKTLPIPFALEIEQPK 95
           G   AS+  FL+   FY V + P  E  +G   L  ++    N++K LPIPF +   +P 
Sbjct: 174 GYSDASIDSFLWTPGFYYVLVYPLDEDQSGDYNLAIEATFDQNLTKPLPIPFMINQSEPP 233

Query: 96  DCPGEL 101
           DC   L
Sbjct: 234 DCKRSL 239