BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0003.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_487664.1| binding-protein dependent transport system inne... 431 e-119 ref|YP_001208669.1| permease [Bradyrhizobium sp. ORS 278] >gi|14... 395 e-108 ref|YP_002947377.1| binding-protein-dependent transport systems ... 331 6e-89 ref|NP_883688.1| permease component of ABC transporter [Bordetel... 322 5e-86 ref|YP_001631515.1| taurine ABC transporter, permease protein [B... 319 3e-85 >ref|YP_487664.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD08753.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 256 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/256 (86%), Positives = 236/256 (92%) Query: 1 MDGAGVRRLGLGLIPWVGAILLWYAVRWSGFVNASLIPAPHQVAAKFVELLTKEGLLIDI 60 M+G RR+ LGL PWVGA+LLWYAVRWSGFVN SLIPAPH VAAKFVELL +E LL+DI Sbjct: 1 MNGNVARRVILGLTPWVGAVLLWYAVRWSGFVNPSLIPAPHNVAAKFVELLFQEHLLLDI 60 Query: 61 FASTRRVFFGVSLGILVAVPVGFLLGWYSPARTFADPMINFFRALPPIALIPLVIVYFGV 120 +ASTRRV GV GI VAVPVGF+LGWY ARTFADPMINFFRALPPIALIPLVIVYFGV Sbjct: 61 WASTRRVLLGVIAGIAVAVPVGFVLGWYRGARTFADPMINFFRALPPIALIPLVIVYFGV 120 Query: 121 DELAKLVILFYASFFSGVIVMYEGVSQITPLYIRVAQTLGANQAEIFRKVIIPLTVPHIL 180 DE+AKLVILFYASFF+GVIVMYEGVSQITPLYIRVA TLGA++ EIFRKVIIPLTVPHIL Sbjct: 121 DEVAKLVILFYASFFAGVIVMYEGVSQITPLYIRVAHTLGASEFEIFRKVIIPLTVPHIL 180 Query: 181 TALRVALGVAWATLVASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIGLIALIMDMIL 240 TALRVALGVAWATLVASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIG IALIMD+IL Sbjct: 181 TALRVALGVAWATLVASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIGCIALIMDLIL 240 Query: 241 RKITARLLVWQDRAIA 256 R+I+ARLLVWQ+RA A Sbjct: 241 RRISARLLVWQERASA 256 >ref|YP_001208669.1| permease [Bradyrhizobium sp. ORS 278] emb|CAL80454.1| Putative permease of the binding-protein-dependent transport system family [Bradyrhizobium sp. ORS 278] Length = 247 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/246 (80%), Positives = 219/246 (89%) Query: 11 LGLIPWVGAILLWYAVRWSGFVNASLIPAPHQVAAKFVELLTKEGLLIDIFASTRRVFFG 70 L L PW+ ++LWYAVR SGFVN +L+P+P QV A+FV+LL GLL DIFAS RRVF G Sbjct: 2 LRLAPWICVLMLWYAVRLSGFVNDALVPSPQQVGARFVDLLLHHGLLYDIFASARRVFAG 61 Query: 71 VSLGILVAVPVGFLLGWYSPARTFADPMINFFRALPPIALIPLVIVYFGVDELAKLVILF 130 V+LGI AVP GFL+GWY PAR+FADP+INFFRALPPIALIPLVIVYFGVDELAKLVILF Sbjct: 62 VTLGIAAAVPAGFLIGWYRPARSFADPLINFFRALPPIALIPLVIVYFGVDELAKLVILF 121 Query: 131 YASFFSGVIVMYEGVSQITPLYIRVAQTLGANQAEIFRKVIIPLTVPHILTALRVALGVA 190 YA+FFSGVIVMYEGVSQITPLYIRVAQTLGA + E F KVIIPLTVPHILTALRVALGV Sbjct: 122 YAAFFSGVIVMYEGVSQITPLYIRVAQTLGATELETFLKVIIPLTVPHILTALRVALGVT 181 Query: 191 WATLVASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIGLIALIMDMILRKITARLLVW 250 WATLVASELIAAQRGLGA IQNASTYFLLDVIYVGIICIG +ALIMD +LR+++A LLVW Sbjct: 182 WATLVASELIAAQRGLGATIQNASTYFLLDVIYVGIICIGAVALIMDTLLRRLSAWLLVW 241 Query: 251 QDRAIA 256 QDRA+A Sbjct: 242 QDRAVA 247 >ref|YP_002947377.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS22111.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 256 Score = 331 bits (849), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 170/239 (71%), Positives = 206/239 (86%), Gaps = 1/239 (0%) Query: 15 PWVGAILLWYAVRWSGFVNASLIPAPHQVAAKFVELLTKEGLLIDIFASTRRVFFGVSLG 74 PW+ + LWYA+R SG VN +L+PAPH V AKFVEL ++ L DI+ ST+RVF GV+LG Sbjct: 17 PWLLILALWYAIRASGLVNPALVPAPHMVLAKFVEL-SRGRLWEDIYMSTQRVFIGVALG 75 Query: 75 ILVAVPVGFLLGWYSPARTFADPMINFFRALPPIALIPLVIVYFGVDELAKLVILFYASF 134 + +AVPVGF LGWY R+F DP+INFFRALPPIALIPLVIVYFG+ E AK ILFYASF Sbjct: 76 VSLAVPVGFCLGWYRGLRSFMDPVINFFRALPPIALIPLVIVYFGIGEAAKTAILFYASF 135 Query: 135 FSGVIVMYEGVSQITPLYIRVAQTLGANQAEIFRKVIIPLTVPHILTALRVALGVAWATL 194 F+GVIVMYEG++QI+P+YI+VA+TLGA+ EIF KVI+PLT+PHILTA+RVALGVAWATL Sbjct: 136 FAGVIVMYEGIAQISPIYIKVARTLGASDVEIFGKVIVPLTIPHILTAVRVALGVAWATL 195 Query: 195 VASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIGLIALIMDMILRKITARLLVWQDR 253 VASELIAAQ+GLGA+IQNAS++F LD+IYVGIICIG+IAL+MD++LR T RL+ WQDR Sbjct: 196 VASELIAAQQGLGALIQNASSFFQLDIIYVGIICIGVIALVMDLLLRLATRRLVAWQDR 254 >ref|NP_883688.1| permease component of ABC transporter [Bordetella parapertussis 12822] ref|NP_888997.1| taurine ABC transporter permease [Bordetella bronchiseptica RB50] emb|CAE36690.1| permease component of ABC transporter [Bordetella parapertussis] emb|CAE32951.1| permease component of ABC transporter [Bordetella bronchiseptica RB50] Length = 255 Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 165/241 (68%), Positives = 199/241 (82%), Gaps = 1/241 (0%) Query: 13 LIPWVGAILLWYAVRWSGFVNASLIPAPHQVAAKFVELLTKEGLLIDIFASTRRVFFGVS 72 L PW+ +LLWY +R SG V+ +L+P+P +V +FV L+ L DI ST+RVF GV Sbjct: 14 LAPWLLIVLLWYGIRASGLVSPALVPSPGEVWTRFVALMQAR-LPHDILMSTQRVFVGVC 72 Query: 73 LGILVAVPVGFLLGWYSPARTFADPMINFFRALPPIALIPLVIVYFGVDELAKLVILFYA 132 LG L+AVPVGF+LGWY R+F DP+INFFRALPPIALIPLVIVYFG+ E AK+ ILFYA Sbjct: 73 LGTLLAVPVGFVLGWYRGVRSFIDPVINFFRALPPIALIPLVIVYFGIGETAKIAILFYA 132 Query: 133 SFFSGVIVMYEGVSQITPLYIRVAQTLGANQAEIFRKVIIPLTVPHILTALRVALGVAWA 192 SFF+GVIVMYEG+SQI P+++RVA+TLGA EIFRKVI+PLT+PH+LTALRVALGVAWA Sbjct: 133 SFFAGVIVMYEGISQINPIFVRVAKTLGATDGEIFRKVIVPLTIPHMLTALRVALGVAWA 192 Query: 193 TLVASELIAAQRGLGAMIQNASTYFLLDVIYVGIICIGLIALIMDMILRKITARLLVWQD 252 TLVASELIAAQ+GLGA+IQ+AS++F LD+IYVGIICIG IAL MD+ LR RL+ WQD Sbjct: 193 TLVASELIAAQQGLGALIQDASSFFQLDIIYVGIICIGFIALAMDLALRAAARRLVAWQD 252 Query: 253 R 253 R Sbjct: 253 R 253 >ref|YP_001631515.1| taurine ABC transporter, permease protein [Bordetella petrii DSM 12804] emb|CAP43247.1| taurine ABC transporter, permease protein [Bordetella petrii] Length = 238 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 162/234 (69%), Positives = 200/234 (85%), Gaps = 1/234 (0%) Query: 20 ILLWYAVRWSGFVNASLIPAPHQVAAKFVELLTKEGLLIDIFASTRRVFFGVSLGILVAV 79 +L WY VR SG V+ +L+P+PH+V +KF+ L+ L DI ST+RV GV LGI++AV Sbjct: 4 VLAWYGVRASGLVSPALVPSPHEVLSKFLALMQTR-LPHDILMSTQRVLLGVLLGIVLAV 62 Query: 80 PVGFLLGWYSPARTFADPMINFFRALPPIALIPLVIVYFGVDELAKLVILFYASFFSGVI 139 PVGF+LGWY R+F DP+INFFRALPPIALIPLVIVYFG+ E AK+ ILFYASFF+GVI Sbjct: 63 PVGFVLGWYKSVRSFVDPVINFFRALPPIALIPLVIVYFGIGESAKIAILFYASFFAGVI 122 Query: 140 VMYEGVSQITPLYIRVAQTLGANQAEIFRKVIIPLTVPHILTALRVALGVAWATLVASEL 199 VMYEG++QI P+Y+RV++TLGA+ EIFRKVI+PLT+PH+LTALRVALGVAWATLVASEL Sbjct: 123 VMYEGIAQINPIYVRVSRTLGASDGEIFRKVIVPLTIPHMLTALRVALGVAWATLVASEL 182 Query: 200 IAAQRGLGAMIQNASTYFLLDVIYVGIICIGLIALIMDMILRKITARLLVWQDR 253 IAAQ+GLGA+IQ+AS++F LD+IYVGIICIGLIAL+MD+ILR RL+ WQ+R Sbjct: 183 IAAQQGLGALIQDASSFFQLDIIYVGIICIGLIALVMDLILRAAARRLVAWQER 236