BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0010.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767433.1| hypothetical protein bll0793 [Bradyrhizobium ja... 268 2e-70 ref|YP_001202265.1| putative metal-dependent hydrolase [Bradyrhi... 260 4e-68 ref|ZP_08628071.1| metal-dependent hydrolase [Bradyrhizobiaceae ... 260 5e-68 ref|YP_575385.1| hypothetical protein Nham_0023 [Nitrobacter ham... 258 2e-67 ref|YP_779144.1| hypothetical protein RPE_0204 [Rhodopseudomonas... 256 9e-67 >ref|NP_767433.1| hypothetical protein bll0793 [Bradyrhizobium japonicum USDA 110] sp|Q89W99.1|RRMF_BRAJA RecName: Full=Probable rRNA maturation factor dbj|BAC46058.1| bll0793 [Bradyrhizobium japonicum USDA 110] Length = 183 Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/160 (81%), Positives = 142/160 (88%) Query: 4 FPATEVLVTAECWQAEPNADAVIHRAIEAAAEIADADVADAELAVMLTDDAGIRTLNANW 63 P TEVLV A+CWQ EP+++AVI RA+ AAAE D DVA+AE+AVMLTDDAGIRTLN+NW Sbjct: 20 LPMTEVLVVADCWQREPDSEAVIQRAVAAAAESVDEDVAEAEVAVMLTDDAGIRTLNSNW 79 Query: 64 RSIDKPTNVLSFPALQPEGAGGPDDAPRMLGDIAIAYETTRREADEERKPFDHHLSHLAV 123 R IDKPTNVLSFPALQPEG DAPRMLGDIAIAYET RREADEE+KPFDHHLSHLAV Sbjct: 80 RGIDKPTNVLSFPALQPEGEWKEGDAPRMLGDIAIAYETMRREADEEKKPFDHHLSHLAV 139 Query: 124 HGFLHLIGYDHENDDDAEDMEALEREILSSLGIPDPYADR 163 HGFLHLIGYDHENDDDAE+MEALE +IL+ LGIPDPYADR Sbjct: 140 HGFLHLIGYDHENDDDAEEMEALETQILAHLGIPDPYADR 179 >ref|YP_001202265.1| putative metal-dependent hydrolase [Bradyrhizobium sp. ORS 278] emb|CAL74015.1| conserved hypothetical protein; putative metal-dependent hydrolase [Bradyrhizobium sp. ORS 278] Length = 180 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 140/162 (86%) Query: 2 SAFPATEVLVTAECWQAEPNADAVIHRAIEAAAEIADADVADAELAVMLTDDAGIRTLNA 61 S P TEV+V A+CWQ +P+A+ VI RAI AAAE+ DADV DAE+AVMLTDD GIRTLN+ Sbjct: 15 SPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIAVMLTDDGGIRTLNS 74 Query: 62 NWRSIDKPTNVLSFPALQPEGAGGPDDAPRMLGDIAIAYETTRREADEERKPFDHHLSHL 121 NWR IDKPTNVLSFPALQP G G +DAPRMLGDIAIAYET RREADEE+KPF HHLSHL Sbjct: 75 NWRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHL 134 Query: 122 AVHGFLHLIGYDHENDDDAEDMEALEREILSSLGIPDPYADR 163 VHGFLHLIGYDHE DD+AE+MEALE EIL+ LGIPDPYADR Sbjct: 135 TVHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPYADR 176 >ref|ZP_08628071.1| metal-dependent hydrolase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08980.1| metal-dependent hydrolase [Bradyrhizobiaceae bacterium SG-6C] Length = 180 Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 126/158 (79%), Positives = 137/158 (86%) Query: 4 FPATEVLVTAECWQAEPNADAVIHRAIEAAAEIADADVADAELAVMLTDDAGIRTLNANW 63 PATEVLVTA+CW E +A+ ++HRAIEAAA + DAD ADAE+AVMLTDDAGIRTLN NW Sbjct: 17 LPATEVLVTADCWAGESSAETIVHRAIEAAAAMVDADTADAEVAVMLTDDAGIRTLNNNW 76 Query: 64 RSIDKPTNVLSFPALQPEGAGGPDDAPRMLGDIAIAYETTRREADEERKPFDHHLSHLAV 123 R IDKPTNVLSFPALQPE DDAPRMLGDIAIAYETTR+EAD E KPF+HHLSHLAV Sbjct: 77 RGIDKPTNVLSFPALQPERTPADDDAPRMLGDIAIAYETTRKEADSEHKPFEHHLSHLAV 136 Query: 124 HGFLHLIGYDHENDDDAEDMEALEREILSSLGIPDPYA 161 HGFLHLIGYDHE DDDAE ME LER+IL+ LGIPDPYA Sbjct: 137 HGFLHLIGYDHETDDDAEIMEGLERDILAQLGIPDPYA 174 >ref|YP_575385.1| hypothetical protein Nham_0023 [Nitrobacter hamburgensis X14] sp|Q1QS72.1|RRMF_NITHX RecName: Full=Probable rRNA maturation factor gb|ABE60925.1| protein of unknown function UPF0054 [Nitrobacter hamburgensis X14] Length = 190 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 137/159 (86%) Query: 3 AFPATEVLVTAECWQAEPNADAVIHRAIEAAAEIADADVADAELAVMLTDDAGIRTLNAN 62 A PATEVLV AECW+AE A+A+IHRA+E AA + D D DAELA+MLTDDAGIRTLNAN Sbjct: 26 ALPATEVLVVAECWRAEAGAEAIIHRAVETAAGMVDTDTGDAELAIMLTDDAGIRTLNAN 85 Query: 63 WRSIDKPTNVLSFPALQPEGAGGPDDAPRMLGDIAIAYETTRREADEERKPFDHHLSHLA 122 WR IDKPTNVLSFPALQP GA PDDAPRMLGDIAIAYET RREA +E KPFDHHLSHL Sbjct: 86 WRGIDKPTNVLSFPALQPTGAPSPDDAPRMLGDIAIAYETLRREACDEHKPFDHHLSHLT 145 Query: 123 VHGFLHLIGYDHENDDDAEDMEALEREILSSLGIPDPYA 161 +HGFLHLIGYDHE D++A +ME LER+IL+ LGIPDPYA Sbjct: 146 IHGFLHLIGYDHETDEEAGEMENLERKILARLGIPDPYA 184 >ref|YP_779144.1| hypothetical protein RPE_0204 [Rhodopseudomonas palustris BisA53] sp|Q07V70.1|RRMF_RHOP5 RecName: Full=Probable rRNA maturation factor gb|ABJ04164.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisA53] Length = 172 Score = 256 bits (654), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 140/159 (88%), Gaps = 1/159 (0%) Query: 5 PATEVLVTAECWQAEPNADAVIHRAIEAAAEIADADVADAELAVMLTDDAGIRTLNANWR 64 PATEVL+ A+CWQAE A+AV+ RAIEAAA + DA+ ADAELAVML+DDAG+RTLNANWR Sbjct: 6 PATEVLIVADCWQAESEAEAVVLRAIEAAAAMVDAETADAELAVMLSDDAGVRTLNANWR 65 Query: 65 SIDKPTNVLSFPALQPEGAGGPDDAPRMLGDIAIAYETTRREADEERKPFDHHLSHLAVH 124 +DKPTNVLSFPALQP A PDDAPRMLGDIAIAYETTRREAD+E KPFDHHLSHLAVH Sbjct: 66 GLDKPTNVLSFPALQP-SATMPDDAPRMLGDIAIAYETTRREADDEGKPFDHHLSHLAVH 124 Query: 125 GFLHLIGYDHENDDDAEDMEALEREILSSLGIPDPYADR 163 GFLHL+GYDHE + +AE ME LER IL+ LG+PDPYAD+ Sbjct: 125 GFLHLVGYDHETESEAEAMEQLERRILAQLGVPDPYADQ 163