BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0004.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767427.1| hypothetical protein blr0787 [Bradyrhizobium ja... 431 e-118 ref|YP_001202271.1| hypothetical protein BRADO0049 [Bradyrhizobi... 405 e-111 ref|ZP_08628066.1| hypothetical protein CSIRO_1136 [Bradyrhizobi... 394 e-107 ref|YP_001989480.1| hypothetical protein Rpal_0444 [Rhodopseudom... 393 e-107 ref|NP_945793.1| hypothetical protein RPA0440 [Rhodopseudomonas ... 392 e-107 >ref|NP_767427.1| hypothetical protein blr0787 [Bradyrhizobium japonicum USDA 110] dbj|BAC46052.1| blr0787 [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/357 (63%), Positives = 275/357 (77%), Gaps = 1/357 (0%) Query: 1 MTTAPALIPELDDIVRRGDPKRRAEAARRLGELFLQGAASFRPDHIDLFDGVLTSLVPHA 60 MT A +LIP LDDIV+RGDP+RR E AR + ELF Q A RP+ IDLFD +L LVPHA Sbjct: 1 MTVATSLIPGLDDIVKRGDPRRRGEIARAIAELFFQDPAKLRPELIDLFDDLLIDLVPHA 60 Query: 61 ELAARIDLAERLAPLANAPRHLVGQLARDDEVAIAGPLLRRSPMLDEKVLVEIANAKGQG 120 ELA+R+DLAER + L NAPRHLV Q AR++E+ +A P+LRRSP+LDE LVEIA KGQG Sbjct: 61 ELASRVDLAERFSRLDNAPRHLVNQFARENEIMVAAPVLRRSPVLDEAALVEIARLKGQG 120 Query: 121 HLLAIAERSKLSTALTDVLVRRGDRDVIRCAAGNAGATFSDASFATLVRRAGQDGVLTLR 180 HLLA+ ER LS+ +TDVLV RGDRDV+R AAGNAGA FS ++ L++RA QDGVLTL+ Sbjct: 121 HLLAMTERPALSSVVTDVLVERGDRDVVRRAAGNAGAMFSPGGYSELIKRAAQDGVLTLK 180 Query: 181 IGRRDDLPPEHLKGLLAGSIDVIRRRLHAVAKPERQAEIKLAMNEI-EGVIVQVEGRDFT 239 IG+R+DL EHLK LL G++DVIRRRL +V P RQ EIK AM I E + RDFT Sbjct: 181 IGQRNDLSGEHLKELLNGTLDVIRRRLSSVVNPVRQVEIKRAMAAIEEAALPPGPRRDFT 240 Query: 240 AAQRAILALHRAGELNEAAVAGFAKAFKYEECVAALAAMAGVKIVTLDRLISGDRYDPIL 299 AAQR +L LHR G L E+A+ GFAKA KYEE +A+L+AM+GV++ LDRLI+GDRYDPIL Sbjct: 241 AAQRTVLGLHREGHLGESALLGFAKANKYEEAIASLSAMSGVRLSILDRLIAGDRYDPIL 300 Query: 300 IASKTIGFEWPTVRALILMRLGPNRVPSPADIEGARVNFVRLMPSTAQRVVEFWKSR 356 I + + WPTVRALIL+ GP+R P+ ADIE AR+NF RLMP+TA+RVV FW++R Sbjct: 301 ILGRVLNLGWPTVRALILLWYGPHRTPADADIEAARMNFTRLMPTTAERVVNFWRNR 357 >ref|YP_001202271.1| hypothetical protein BRADO0049 [Bradyrhizobium sp. ORS 278] emb|CAL74021.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 358 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/357 (60%), Positives = 274/357 (76%), Gaps = 1/357 (0%) Query: 1 MTTAPALIPELDDIVRRGDPKRRAEAARRLGELFLQGAASFRPDHIDLFDGVLTSLVPHA 60 MT A ALIP LD IV+ GD +R EA RR+ +L + RP+HI+LFDG+LT L+P A Sbjct: 1 MTPATALIPGLDGIVKHGDEERCVEATRRIADLLFEDVTRLRPEHINLFDGLLTDLLPFA 60 Query: 61 ELAARIDLAERLAPLANAPRHLVGQLARDDEVAIAGPLLRRSPMLDEKVLVEIANAKGQG 120 +++ R+DLAERL+ LA APR +VG+LA DDEVA+A PLLRRSP+LD++VL+EIA +K QG Sbjct: 61 DVSTRVDLAERLSYLAKAPRVVVGRLAHDDEVAVASPLLRRSPVLDDRVLIEIAQSKSQG 120 Query: 121 HLLAIAERSKLSTALTDVLVRRGDRDVIRCAAGNAGATFSDASFATLVRRAGQDGVLTLR 180 HLLA+AER LS +TDVLVRRGDRDV+R AA N GATFSD ++ L+ RAG DGVLTL Sbjct: 121 HLLAMAERPALSVEMTDVLVRRGDRDVVRRAAANDGATFSDRGYSELINRAGFDGVLTLT 180 Query: 181 IGRRDDLPPEHLKGLLAGSIDVIRRRLHAVAKPERQAEIKLAMNEIEGVI-VQVEGRDFT 239 +G+R+DL +HLK LLAGS+DVIRRRL V +PE+QA I+ A+ E++ R+F Sbjct: 181 VGKRNDLSDDHLKQLLAGSLDVIRRRLFDVVRPEKQARIRQALAELDDTQGATASKRNFV 240 Query: 240 AAQRAILALHRAGELNEAAVAGFAKAFKYEECVAALAAMAGVKIVTLDRLISGDRYDPIL 299 AQR ILAL+ G L+EAA+ GFA A KYEE VAALAAM G+KI TLDRLISGDR+DP+L Sbjct: 241 PAQRTILALYEDGALDEAALIGFASAHKYEETVAALAAMTGLKIATLDRLISGDRHDPLL 300 Query: 300 IASKTIGFEWPTVRALILMRLGPNRVPSPADIEGARVNFVRLMPSTAQRVVEFWKSR 356 I +TIG +W TV+ALI +RLGP RVP+ D++ RVN+ RL+ STA+RVV FWK+R Sbjct: 301 ILGRTIGLDWRTVQALIQLRLGPRRVPAQRDLDALRVNYARLLSSTAERVVAFWKTR 357 >ref|ZP_08628066.1| hypothetical protein CSIRO_1136 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08975.1| hypothetical protein CSIRO_1136 [Bradyrhizobiaceae bacterium SG-6C] Length = 360 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/357 (56%), Positives = 262/357 (73%), Gaps = 1/357 (0%) Query: 1 MTTAPALIPELDDIVRRGDPKRRAEAARRLGELFLQGAASFRPDHIDLFDGVLTSLVPHA 60 M A +LIPELDDIV+ G ++RAEA R+ LFLQGAA F H+ LFD +L LVP Sbjct: 1 MAAALSLIPELDDIVKNGSAEKRAEAIERISSLFLQGAAHFETKHVALFDDILVGLVPAT 60 Query: 61 ELAARIDLAERLAPLANAPRHLVGQLARDDEVAIAGPLLRRSPMLDEKVLVEIANAKGQG 120 E+ R +LAERL+ L NAP LV QLAR+ E+ IAGP+L RSP+LD+ LV+IA +GQ Sbjct: 61 EIETRAELAERLSKLDNAPPTLVKQLAREAEIRIAGPILSRSPLLDDPTLVDIARGRGQE 120 Query: 121 HLLAIAERSKLSTALTDVLVRRGDRDVIRCAAGNAGATFSDASFATLVRRAGQDGVLTLR 180 HL AI+ R LS A+TDV+VRRGDRDV+R A NAGA FS+ ++ LV+RA DG+L L Sbjct: 121 HLAAISGRKTLSPAVTDVIVRRGDRDVVRNVAANAGAQFSEFGYSGLVKRATDDGMLALT 180 Query: 181 IGRRDDLPPEHLKGLLAGSIDVIRRRLHAVAKPERQAEIKLAMNEIEGV-IVQVEGRDFT 239 +G+R+DLP LK LLA S+DV+RRRL +AKP+++A I AM E+ G Q + RDF Sbjct: 181 VGQREDLPAATLKQLLAKSVDVVRRRLFDMAKPKQKAAINQAMIELSGAPKSQPQARDFE 240 Query: 240 AAQRAILALHRAGELNEAAVAGFAKAFKYEECVAALAAMAGVKIVTLDRLISGDRYDPIL 299 AQRAILALH AG L++AA+ FA+ KYEE VAALAAM G+++ +++L+ GDRYDP+L Sbjct: 241 PAQRAILALHHAGNLDQAALLDFARQHKYEEAVAALAAMTGMRLNVVNQLMLGDRYDPVL 300 Query: 300 IASKTIGFEWPTVRALILMRLGPNRVPSPADIEGARVNFVRLMPSTAQRVVEFWKSR 356 + K+IG EW TVRAL+++RLGP +VPS DIE AR+N+ RL P+TAQRV+ FW+ R Sbjct: 301 LLGKSIGLEWATVRALLVLRLGPGKVPSGPDIEEARINYERLSPATAQRVLTFWRLR 357 >ref|YP_001989480.1| hypothetical protein Rpal_0444 [Rhodopseudomonas palustris TIE-1] gb|ACE99004.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 361 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/357 (56%), Positives = 260/357 (72%), Gaps = 1/357 (0%) Query: 1 MTTAPALIPELDDIVRRGDPKRRAEAARRLGELFLQGAASFRPDHIDLFDGVLTSLVPHA 60 M A +L+PELDDIVR+GDP RRA+A RR+ +L+++GA SF+PDH+ LFDG+L +LVP Sbjct: 1 MPAATSLLPELDDIVRQGDPVRRADAVRRISDLYIRGAESFQPDHVALFDGILLTLVPEI 60 Query: 61 ELAARIDLAERLAPLANAPRHLVGQLARDDEVAIAGPLLRRSPMLDEKVLVEIANAKGQG 120 ++ R +LA+R + + NAP LV QL D+++ IAGPLLRRS MLD+ LVE+A +GQ Sbjct: 61 DVEVRSELAQRFSEITNAPPELVRQLVHDEDIGIAGPLLRRSTMLDDPTLVELARLRGQT 120 Query: 121 HLLAIAERSKLSTALTDVLVRRGDRDVIRCAAGNAGATFSDASFATLVRRAGQDGVLTLR 180 HLLAI+ER +S +TDV+VRRGDRDV+R AGNAGA FS F L+RRA QDGVL + Sbjct: 121 HLLAISERLSISPPITDVIVRRGDRDVVRKVAGNAGAEFSATGFNGLIRRAAQDGVLAVA 180 Query: 181 IGRRDDLPPEHLKGLLAGSIDVIRRRLHAVAKPERQAEIKLAMNEIEGVIVQVE-GRDFT 239 +G RDDL P LK LLA S D++RRRL A+P + I AM E+ G Q RDF Sbjct: 181 VGTRDDLSPPRLKDLLACSTDLVRRRLFESARPSARIAINRAMRELAGESRQPSVQRDFD 240 Query: 240 AAQRAILALHRAGELNEAAVAGFAKAFKYEECVAALAAMAGVKIVTLDRLISGDRYDPIL 299 AAQR+++ LH GELNEA V GFA+A +YEE VAAL+AM G +I TLD+++SG+R+DP+L Sbjct: 241 AAQRSVVELHNRGELNEATVIGFARAHQYEETVAALSAMTGTRISTLDQMMSGERHDPVL 300 Query: 300 IASKTIGFEWPTVRALILMRLGPNRVPSPADIEGARVNFVRLMPSTAQRVVEFWKSR 356 I K +GF W TVRALI +RLGP+R + D+E A+ NF RL STAQRV+ FWK R Sbjct: 301 ILGKALGFGWATVRALIGLRLGPDRSVACPDVEEAQHNFERLALSTAQRVLGFWKMR 357 >ref|NP_945793.1| hypothetical protein RPA0440 [Rhodopseudomonas palustris CGA009] emb|CAE25884.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 361 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/357 (56%), Positives = 260/357 (72%), Gaps = 1/357 (0%) Query: 1 MTTAPALIPELDDIVRRGDPKRRAEAARRLGELFLQGAASFRPDHIDLFDGVLTSLVPHA 60 M A +L+PELDDIVR+GDP RRA+A RR+ +L+++GA SF+PDH+ LFDG+L +LVP Sbjct: 1 MPAATSLLPELDDIVRQGDPVRRADAVRRISDLYIRGAESFQPDHVALFDGILLTLVPEI 60 Query: 61 ELAARIDLAERLAPLANAPRHLVGQLARDDEVAIAGPLLRRSPMLDEKVLVEIANAKGQG 120 ++ R +LA+R + + NAP LV QL D+++ IAGPLLRRS MLD+ LVE+A +GQ Sbjct: 61 DVEVRSELAQRFSEITNAPPELVRQLVHDEDIGIAGPLLRRSMMLDDPTLVELARLRGQT 120 Query: 121 HLLAIAERSKLSTALTDVLVRRGDRDVIRCAAGNAGATFSDASFATLVRRAGQDGVLTLR 180 HLLAI+ER +S +TDV+VRRGDRDV+R AGNAGA FS F L+RRA QDGVL + Sbjct: 121 HLLAISERLSISPPITDVIVRRGDRDVVRKVAGNAGAEFSATGFNGLIRRAAQDGVLAIA 180 Query: 181 IGRRDDLPPEHLKGLLAGSIDVIRRRLHAVAKPERQAEIKLAMNEIEGVIVQVE-GRDFT 239 +G RDDL P LK LLA S D++RRRL A+P + I AM E+ G Q RDF Sbjct: 181 VGTRDDLSPPRLKDLLACSTDLVRRRLFESARPSARIAINRAMRELAGESRQPSVQRDFD 240 Query: 240 AAQRAILALHRAGELNEAAVAGFAKAFKYEECVAALAAMAGVKIVTLDRLISGDRYDPIL 299 AAQR+++ LH GELNEA V GFA+A +YEE VAAL+AM G +I TLD+++SG+R+DP+L Sbjct: 241 AAQRSVVELHNRGELNEATVIGFARAHQYEETVAALSAMTGTRISTLDQMMSGERHDPVL 300 Query: 300 IASKTIGFEWPTVRALILMRLGPNRVPSPADIEGARVNFVRLMPSTAQRVVEFWKSR 356 I K +GF W TVRALI +RLGP+R + D+E A+ NF RL STAQRV+ FWK R Sbjct: 301 ILGKALGFGWATVRALIGLRLGPDRSVACPDVEEAQHNFERLALSTAQRVLGFWKMR 357