BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0003.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_567375.1| hypothetical protein RPD_0234 [Rhodopseudomonas... 377 e-103 ref|YP_575390.1| hypothetical protein Nham_0028 [Nitrobacter ham... 370 e-100 ref|NP_945792.1| hypothetical protein RPA0439 [Rhodopseudomonas ... 363 1e-98 ref|YP_001989479.1| hypothetical protein Rpal_0443 [Rhodopseudom... 362 2e-98 ref|ZP_01045167.1| hypothetical protein NB311A_08478 [Nitrobacte... 362 2e-98 >ref|YP_567375.1| hypothetical protein RPD_0234 [Rhodopseudomonas palustris BisB5] sp|Q13EL5.1|RIMP_RHOPS RecName: Full=Ribosome maturation factor rimP gb|ABE37474.1| protein of unknown function DUF150 [Rhodopseudomonas palustris BisB5] Length = 262 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/251 (76%), Positives = 213/251 (84%) Query: 4 ELLAEPRLVVEPGVAARVAAVAVPVLQGMGYRLVRIKVSGDAGCTVQIMAERPDGSMQLE 63 + LAEPRLVVEPGVAAR AAVA PVLQ MGYRLVRIKVSG+AGCTVQIMAERPDG+M ++ Sbjct: 12 DTLAEPRLVVEPGVAARFAAVAEPVLQAMGYRLVRIKVSGEAGCTVQIMAERPDGTMLID 71 Query: 64 DCEAISRALSPVLDVADPIERAYRLEISSPGIDRPLVRRSDFERYTGHLVKIEMAVAHQG 123 DCEA+SRALSPVLDV DPI+RAYRLEISSPGIDRPLVR SDF RY+GHLVKIEMAV HQG Sbjct: 72 DCEAVSRALSPVLDVTDPIDRAYRLEISSPGIDRPLVRSSDFARYSGHLVKIEMAVPHQG 131 Query: 124 RKRFRGVLAGVEGDAVRIRRDDPRPDEDAEVLLVMEDISDARLVLTDELIEESMRRGKAA 183 RKR+RG+L GVEGDA+RI+R+ DED VLL M DI DARLVLTDEL+ ESMRRGK A Sbjct: 132 RKRYRGLLDGVEGDAIRIQREGVTKDEDPLVLLPMHDIGDARLVLTDELVAESMRRGKQA 191 Query: 184 ERELRRELGLAPPQPAHAKKSDPAKSQKPKPKPGDKPAHKPGKKPAPTNTKKHRLAAERA 243 EREL++ LGLAPP P HAK+SDP KS PKPKP KP KP KP P NTK+HRLAA+R Sbjct: 192 ERELKQSLGLAPPPPPHAKRSDPKKSSAPKPKPLTKPVVKPDAKPKPKNTKQHRLAADRL 251 Query: 244 RRGEIDPSEGD 254 RRG+ D SEGD Sbjct: 252 RRGDTDLSEGD 262 >ref|YP_575390.1| hypothetical protein Nham_0028 [Nitrobacter hamburgensis X14] sp|Q1QS67.1|RIMP_NITHX RecName: Full=Ribosome maturation factor rimP gb|ABE60930.1| protein of unknown function DUF150 [Nitrobacter hamburgensis X14] Length = 263 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/255 (74%), Positives = 221/255 (86%), Gaps = 3/255 (1%) Query: 2 DTELLAEPRLVVEPGVAARVAAVAVPVLQGMGYRLVRIKVSGDAGCTVQIMAERPDGSMQ 61 D ELL EPRLVVEPGVAARV++V PVLQGMGYRLVRIKVSG+ GCTVQIMAERPDGSMQ Sbjct: 10 DHELLDEPRLVVEPGVAARVSSVVAPVLQGMGYRLVRIKVSGEYGCTVQIMAERPDGSMQ 69 Query: 62 LEDCEAISRALSPVLDVADPIERAYRLEISSPGIDRPLVRRSDFERYTGHLVKIEMAVAH 121 +EDCEAIS+ALSPVLDVADPI++AYRLEISSPGIDRPLVRRSDFER+ GHLVK+EMAVAH Sbjct: 70 IEDCEAISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERHAGHLVKVEMAVAH 129 Query: 122 QGRKRFRGVLAGVEGDAVRIRRDDPRPDEDAEVLLVMEDISDARLVLTDELIEESMRRGK 181 QGRKRFRG+L GV+ +A+R+ RDD + +++EVLLVMEDI+DARLVLTDELI ESMRRGK Sbjct: 130 QGRKRFRGILQGVKDNAIRLHRDDVQNVDESEVLLVMEDIADARLVLTDELIAESMRRGK 189 Query: 182 AAERELRRELGLAPPQPAHAKKSDPAKS--QKPKPKPGDKPAHKPGKKPAPTNTKKHRLA 239 AERE++R+LG+ PP P HA K+DPA+S ++ PKP K K +K P NTK+HRLA Sbjct: 190 IAEREMKRDLGILPPPPPHA-KNDPARSPARRNAPKPKLKSTAKAHEKKPPKNTKEHRLA 248 Query: 240 AERARRGEIDPSEGD 254 AER RRGEIDP EG+ Sbjct: 249 AERLRRGEIDPIEGE 263 >ref|NP_945792.1| hypothetical protein RPA0439 [Rhodopseudomonas palustris CGA009] sp|Q6NCN2.1|RIMP_RHOPA RecName: Full=Ribosome maturation factor rimP emb|CAE25883.1| DUF150 [Rhodopseudomonas palustris CGA009] Length = 259 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 190/253 (75%), Positives = 211/253 (83%), Gaps = 3/253 (1%) Query: 2 DTELLAEPRLVVEPGVAARVAAVAVPVLQGMGYRLVRIKVSGDAGCTVQIMAERPDGSMQ 61 +T+ LAEPRLV+EPGVAAR AVA PVL MGYRLVRIKVSGDAGCTVQIMAERPDG+M Sbjct: 10 ETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTML 69 Query: 62 LEDCEAISRALSPVLDVADPIERAYRLEISSPGIDRPLVRRSDFERYTGHLVKIEMAVAH 121 ++DCEA+SRALSPVLDVADPI+RAYRLEISSPGIDRPLVRRSDF RY GHLVKIEMAV H Sbjct: 70 IDDCEAVSRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPH 129 Query: 122 QGRKRFRGVLAGVEGDAVRIRRDDPRPDEDAEVLLVMEDISDARLVLTDELIEESMRRGK 181 QGRKR+RG+L GVEGDAVR++R+ DED VLL M DI DARLVLTDELI ESMRRGK Sbjct: 130 QGRKRYRGLLDGVEGDAVRVQREGATKDEDPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 182 AAERELRRELGLAPPQPAHAKKSDPAKSQKPKPKPGDKPAHKPGKKPAPTNTKKHRLAAE 241 AER+L++ LGLAP P HAK+SDP KS PK P A K KP P NTK+HRLAA+ Sbjct: 190 QAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPK---AAKAPTKPKPQNTKQHRLAAD 246 Query: 242 RARRGEIDPSEGD 254 ++RRGEID SEGD Sbjct: 247 KSRRGEIDTSEGD 259 >ref|YP_001989479.1| hypothetical protein Rpal_0443 [Rhodopseudomonas palustris TIE-1] sp|B3QAB7.1|RIMP_RHOPT RecName: Full=Ribosome maturation factor rimP gb|ACE99003.1| protein of unknown function DUF150 [Rhodopseudomonas palustris TIE-1] Length = 259 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 191/253 (75%), Positives = 210/253 (83%), Gaps = 3/253 (1%) Query: 2 DTELLAEPRLVVEPGVAARVAAVAVPVLQGMGYRLVRIKVSGDAGCTVQIMAERPDGSMQ 61 +T+ LAEPRLV+EPGVAAR AVA PVL MGYRLVRIKVSGDAGCTVQIMAERPDG+M Sbjct: 10 ETDDLAEPRLVIEPGVAARFCAVAEPVLMAMGYRLVRIKVSGDAGCTVQIMAERPDGTML 69 Query: 62 LEDCEAISRALSPVLDVADPIERAYRLEISSPGIDRPLVRRSDFERYTGHLVKIEMAVAH 121 ++DCEA SRALSPVLDVADPI+RAYRLEISSPGIDRPLVRRSDF RY GHLVKIEMAV H Sbjct: 70 IDDCEAASRALSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFARYAGHLVKIEMAVPH 129 Query: 122 QGRKRFRGVLAGVEGDAVRIRRDDPRPDEDAEVLLVMEDISDARLVLTDELIEESMRRGK 181 QGRKR+RG+L GVEGDAVR++R+ DED VLL M DI DARLVLTDELI ESMRRGK Sbjct: 130 QGRKRYRGLLDGVEGDAVRVQREGATKDEDPLVLLPMHDIGDARLVLTDELIAESMRRGK 189 Query: 182 AAERELRRELGLAPPQPAHAKKSDPAKSQKPKPKPGDKPAHKPGKKPAPTNTKKHRLAAE 241 AER+L++ LGLAP P HAK+SDP KS PK P A K KP P NTK+HRLAA+ Sbjct: 190 QAERDLKQSLGLAPEPPPHAKRSDPKKSHAPKRGPK---AAKAPTKPKPQNTKQHRLAAD 246 Query: 242 RARRGEIDPSEGD 254 +ARRGEID SEGD Sbjct: 247 KARRGEIDTSEGD 259 >ref|ZP_01045167.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] gb|EAQ37172.1| hypothetical protein NB311A_08478 [Nitrobacter sp. Nb-311A] Length = 259 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 186/253 (73%), Positives = 207/253 (81%), Gaps = 3/253 (1%) Query: 2 DTELLAEPRLVVEPGVAARVAAVAVPVLQGMGYRLVRIKVSGDAGCTVQIMAERPDGSMQ 61 D ELL EPRLV+EPGVAARVA +A PVLQGMGYRLVRIKVSG+AGCT+QIMAERPDGSMQ Sbjct: 10 DHELLDEPRLVLEPGVAARVATIAAPVLQGMGYRLVRIKVSGEAGCTLQIMAERPDGSMQ 69 Query: 62 LEDCEAISRALSPVLDVADPIERAYRLEISSPGIDRPLVRRSDFERYTGHLVKIEMAVAH 121 +EDCE IS+ LSPVLDVADPI+RAYRLEISSPGIDRPLVRRSDFERY GHL K+EMAVAH Sbjct: 70 IEDCETISKMLSPVLDVADPIDRAYRLEISSPGIDRPLVRRSDFERYAGHLAKVEMAVAH 129 Query: 122 QGRKRFRGVLAGVEGDAVRIRRDDPRPDEDAEVLLVMEDISDARLVLTDELIEESMRRGK 181 QGRKRFRG+L GVE +AVR+ RDD + D DA+VLL+MEDI+DARLVLTDELI ESMRRGK Sbjct: 130 QGRKRFRGILRGVEDNAVRLHRDDVQQDNDADVLLIMEDIADARLVLTDELIAESMRRGK 189 Query: 182 AAERELRRELGLAPPQPAHAKKSDPAKSQKPKPKPGDKPAHKPGKKPAPTNTKKHRLAAE 241 AERE++R LG+ PP P HAK P + PK K K K NTK+HRL AE Sbjct: 190 IAEREMKRNLGILPPPPPHAKNDSPKRGA---PKRKLKNGSKALGKKLSKNTKEHRLTAE 246 Query: 242 RARRGEIDPSEGD 254 RRG+IDP EGD Sbjct: 247 GLRRGDIDPIEGD 259