BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0002.p (538 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767425.1| transcription elongation factor NusA [Bradyrhiz... 1007 0.0 ref|YP_001236264.1| transcription elongation factor NusA [Bradyr... 988 0.0 ref|ZP_01045166.1| transcription elongation factor NusA [Nitroba... 984 0.0 ref|YP_001202273.1| transcription elongation factor NusA [Bradyr... 983 0.0 ref|YP_530372.1| transcription elongation factor NusA [Rhodopseu... 983 0.0 >ref|NP_767425.1| transcription elongation factor NusA [Bradyrhizobium japonicum USDA 110] dbj|BAC46050.1| N-utilization substance protein A [Bradyrhizobium japonicum USDA 110] Length = 536 Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/532 (93%), Positives = 518/532 (97%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREKSIDR IVIAAMEDAIAKAARARYGSETDVHAEID KKGE Sbjct: 1 MAVSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 LRL+RHMLVV+ VEN SNQISL DAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV Sbjct: 61 LRLSRHMLVVEKVENHSNQISLVDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQYQEFKDRIGDIVNG+VKRVEYGSVIVDLGRGEAI+RRDEMLPREVFRNG Sbjct: 121 QKVREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI Sbjct: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEV+KV Sbjct: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN Sbjct: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 STRVFME+LNVDEVVGQLLASEGFTSVEELA+VD+KELAGIEGFDEETA ELQ RAREYL Sbjct: 361 STRVFMESLNVDEVVGQLLASEGFTSVEELAMVDIKELAGIEGFDEETAQELQNRAREYL 420 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 EQ EAELEAKR ELGVEDA+KDVPG+T KMLVK GEND+KTV+DLAGCATDDLVGWTERK Sbjct: 421 EQQEAELEAKRVELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERK 480 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAKPAEEAEAAE 532 EGGE TK+ G LDGIEISRD+AEA+IMQAR+KAGWITEADLAKPAEEAEA+E Sbjct: 481 EGGETTKYPGALDGIEISRDDAEAMIMQARVKAGWITEADLAKPAEEAEASE 532 >ref|YP_001236264.1| transcription elongation factor NusA [Bradyrhizobium sp. BTAi1] gb|ABQ32358.1| NusA antitermination factor [Bradyrhizobium sp. BTAi1] Length = 537 Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/535 (90%), Positives = 519/535 (97%), Gaps = 1/535 (0%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREKSIDR IVIAAMEDAIAKAARARYGSETDVHAEID ++GE Sbjct: 1 MAVSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRRGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 LRL+RHMLVV+ VEN SNQISL DA+RANPGAQ+GDTIADTLPPLEYGRIAAQSAKQVIV Sbjct: 61 LRLSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQYQEFKDRIGDIVNG+VKRVEYGSVI+DLGRGEAI+RRDEMLPREVFRNG Sbjct: 121 QKVREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRAY+FDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI Sbjct: 181 DRVRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 GV+SRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV Sbjct: 241 GVVSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN Sbjct: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 STRVFME+LNVDEVVGQLLASEGFTSVEELALVD+K+LAGIEGFDEETA ELQTRARE+L Sbjct: 361 STRVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLAGIEGFDEETATELQTRAREFL 420 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 EQ EAELEAKRKELGVEDA+K VPG+T KMLVK GEND+KTV+DLAGCATDDLVGWTERK Sbjct: 421 EQQEAELEAKRKELGVEDAVKTVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERK 480 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAKP-AEEAEAAEAE 534 + GE TKHAG LDG+E+SRD+AEA++MQAR+KAGWI+EAD+AKP AE+ +A+E + Sbjct: 481 DSGEQTKHAGILDGLEVSRDDAEAMVMQARVKAGWISEADIAKPEAEDEDASEGQ 535 >ref|ZP_01045166.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] gb|EAQ37171.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] Length = 535 Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/525 (92%), Positives = 508/525 (96%), Gaps = 1/525 (0%) Query: 2 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGEL 61 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEI K G+L Sbjct: 3 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQL 62 Query: 62 RLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQ 121 +LTRHMLVVD VEN++NQISL DAQRANPGAQVGDTIADTLPPLEYGRI+AQSAKQVIVQ Sbjct: 63 QLTRHMLVVDQVENAANQISLKDAQRANPGAQVGDTIADTLPPLEYGRISAQSAKQVIVQ 122 Query: 122 KVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGD 181 KVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEA++RRDEMLPREVFRNGD Sbjct: 123 KVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGD 182 Query: 182 RVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIG 241 RVRAYIFDVRRETRGPQIFLSRTHPQFM KLFAQEVPEIYDGIVEIKAVARDPGSRAKIG Sbjct: 183 RVRAYIFDVRRETRGPQIFLSRTHPQFMVKLFAQEVPEIYDGIVEIKAVARDPGSRAKIG 242 Query: 242 VISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVV 301 V+SRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVV Sbjct: 243 VVSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVV 302 Query: 302 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENS 361 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN+ Sbjct: 303 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENA 362 Query: 362 TRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYLE 421 TR+FMEALNVDEVVGQLLASEGFTSVEEL LVD +E+AGIEGFD+ETANELQ RAREYLE Sbjct: 363 TRMFMEALNVDEVVGQLLASEGFTSVEELTLVDAREIAGIEGFDDETANELQNRAREYLE 422 Query: 422 QLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERKE 481 QLEAELE +RKELGV+DAMK VPG+T KMLVKLGENDV+TVEDLAGCATDDL+GWTERKE Sbjct: 423 QLEAELENRRKELGVDDAMKTVPGVTSKMLVKLGENDVRTVEDLAGCATDDLIGWTERKE 482 Query: 482 GGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAKPAE 526 GE KHAG+ DGIEISR++AEA+IMQARL AGWITEADLAKPAE Sbjct: 483 -GEAVKHAGYFDGIEISREDAEAIIMQARLIAGWITEADLAKPAE 526 >ref|YP_001202273.1| transcription elongation factor NusA [Bradyrhizobium sp. ORS 278] emb|CAL74023.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Bradyrhizobium sp. ORS 278] Length = 535 Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/530 (91%), Positives = 512/530 (96%) Query: 1 MAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGE 60 MAVSAN+LELLQIADAVAREKSIDR IVIAAMEDAIAKAARARYGSETDVHAEID +KGE Sbjct: 1 MAVSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRKGE 60 Query: 61 LRLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIV 120 LRL+RHMLVV+ VEN SNQISL DA+RANPGAQ+GDTIADTLPPLEYGRIAAQSAKQVIV Sbjct: 61 LRLSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIV 120 Query: 121 QKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNG 180 QKVREAERDRQYQEFKDRIGDIVNG+VKRVEYGSVI+DLGRGEAI+RRDEMLPREVFRNG Sbjct: 121 QKVREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNG 180 Query: 181 DRVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 DRVRAY+FDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI Sbjct: 181 DRVRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKI 240 Query: 241 GVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 GV+SRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV Sbjct: 241 GVVSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKV 300 Query: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN Sbjct: 301 VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFEN 360 Query: 361 STRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYL 420 STRVFME+LNVDEVVGQLLASEGFTSVEELALVD+K+LA IEGFDEETA ELQTRARE+L Sbjct: 361 STRVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLASIEGFDEETATELQTRAREFL 420 Query: 421 EQLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERK 480 EQ EAELEAKRKELGVEDA+KDVPG+T KMLVK GEND+KTV+DLAGCATDDLVGW ERK Sbjct: 421 EQQEAELEAKRKELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWVERK 480 Query: 481 EGGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADLAKPAEEAEA 530 +GGE TK AG LDG+++SRD+AEA++MQAR+KAGWITEADLAK E EA Sbjct: 481 DGGEQTKFAGILDGLDVSRDDAEAMVMQARVKAGWITEADLAKGEAEDEA 530 >ref|YP_530372.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB18] gb|ABD86053.1| NusA antitermination factor [Rhodopseudomonas palustris BisB18] Length = 541 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/520 (93%), Positives = 504/520 (96%) Query: 2 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGEL 61 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGEL Sbjct: 3 AVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGEL 62 Query: 62 RLTRHMLVVDVVENSSNQISLHDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQ 121 RL+RHMLVV+ VENSSNQISL DAQRANPGAQ+GDTIADTLPPLEYGRIAAQSAKQVIVQ Sbjct: 63 RLSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQ 122 Query: 122 KVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGD 181 KVREAERDRQYQEFKDRIGDIVNG+VKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGD Sbjct: 123 KVREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGD 182 Query: 182 RVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIG 241 RVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIG Sbjct: 183 RVRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIG 242 Query: 242 VISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVV 301 VISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEV+KVV Sbjct: 243 VISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVV 302 Query: 302 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENS 361 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTE EESERRQADFENS Sbjct: 303 IDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENS 362 Query: 362 TRVFMEALNVDEVVGQLLASEGFTSVEELALVDVKELAGIEGFDEETANELQTRAREYLE 421 TRVFME+LNVDEVVGQLLASEGFTSVEELA+VDV+ELA IEGFD+ETANELQ+RAREYLE Sbjct: 363 TRVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELASIEGFDDETANELQSRAREYLE 422 Query: 422 QLEAELEAKRKELGVEDAMKDVPGITGKMLVKLGENDVKTVEDLAGCATDDLVGWTERKE 481 QLE+ELEAKRKELGVEDA+K VPG+T KMLVK GEND+KTVEDLAGCATDDLVGW+ERKE Sbjct: 423 QLESELEAKRKELGVEDALKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKE 482 Query: 482 GGEPTKHAGFLDGIEISRDEAEALIMQARLKAGWITEADL 521 GGEP K G LD EISR +AE LIMQAR+ AGWITEADL Sbjct: 483 GGEPVKFPGILDANEISRADAETLIMQARVIAGWITEADL 522