BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0038.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772421.1| hypothetical protein bll5781 [Bradyrhizobium ja... 461 e-128 ref|YP_001206916.1| XRE family transcriptional regulator [Bradyr... 427 e-118 ref|YP_001241338.1| XRE family transcriptional regulator [Bradyr... 423 e-116 ref|YP_487362.1| XRE family transcriptional regulator [Rhodopseu... 418 e-115 ref|YP_568853.1| transcriptional regulator [Rhodopseudomonas pal... 397 e-108 >ref|NP_772421.1| hypothetical protein bll5781 [Bradyrhizobium japonicum USDA 110] dbj|BAC51046.1| bll5781 [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/266 (84%), Positives = 248/266 (93%), Gaps = 1/266 (0%) Query: 2 ARAEPAKPVPIGEHLREWRQRRHLSQLDLAVDAEISARHLSFVETGRSAPSRDMVLKLAE 61 A AE ++P+ IG+HLREWRQRR +SQLDLA +AEISARHLSFVETGR+APSRDMVL+LAE Sbjct: 8 AHAERSQPIHIGDHLREWRQRRRMSQLDLAGEAEISARHLSFVETGRAAPSRDMVLRLAE 67 Query: 62 RLDVPLRERNVLLVAAGFAPAFPQRSLDDPALKSAREAINLVLKAHEPNPALAYDRHWNL 121 RLDVPLRERNVLLVAAGFAPAFPQR L+DPALKSAR+AI+LVLKAHEPNPALA DRHWNL Sbjct: 68 RLDVPLRERNVLLVAAGFAPAFPQRPLEDPALKSARQAIDLVLKAHEPNPALAVDRHWNL 127 Query: 122 VSANRMVAPLLEGVPQRLLGQPFNILRLAFHPEGLAPRTVNFAEWAAHLLERLHRQCEAT 181 VSANRMVAPLL+G+PQRLLGQPFN+LRLAFHPE LAPRTVN AEW HLLERLHRQCEAT Sbjct: 128 VSANRMVAPLLDGIPQRLLGQPFNVLRLAFHPEALAPRTVNLAEWCGHLLERLHRQCEAT 187 Query: 182 ADPELLKLYQDLKSYPIPARSAPITTDNNVALPFKLRLNGEILSFISTTMVFGTPVDITL 241 ADPEL+KLY DLKSYPIPARSAP+++D NVA+PFKLR GEILSF STTMVFGTPVDITL Sbjct: 188 ADPELIKLYNDLKSYPIPARSAPLSSD-NVAIPFKLRHEGEILSFFSTTMVFGTPVDITL 246 Query: 242 QELALETFFPADELTAERMRQMAASM 267 ELALETFFPADE TAER++QMAA+M Sbjct: 247 SELALETFFPADERTAERLKQMAAAM 272 >ref|YP_001206916.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78699.1| putative transcriptional regulatory protein, XRE family [Bradyrhizobium sp. ORS 278] Length = 271 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/266 (78%), Positives = 238/266 (89%), Gaps = 1/266 (0%) Query: 2 ARAEPAKPVPIGEHLREWRQRRHLSQLDLAVDAEISARHLSFVETGRSAPSRDMVLKLAE 61 ARA+ AKPV +GEHLR+WRQRRHLSQLDLA+DAEISARHLSFVETGR+APSRDMVLKLAE Sbjct: 7 ARADRAKPVHVGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAE 66 Query: 62 RLDVPLRERNVLLVAAGFAPAFPQRSLDDPALKSAREAINLVLKAHEPNPALAYDRHWNL 121 RLDVPLRERNVLLVAAG+APAF QR L+DPALK AREA+NLVLKAHEPNPA+A DRHWNL Sbjct: 67 RLDVPLRERNVLLVAAGYAPAFQQRPLEDPALKPAREAMNLVLKAHEPNPAVAVDRHWNL 126 Query: 122 VSANRMVAPLLEGVPQRLLGQPFNILRLAFHPEGLAPRTVNFAEWAAHLLERLHRQCEAT 181 V+ANR++APLL GVP+RLL P N+LR+A HPEGLA RTVN EW+ HLLERLHRQCEAT Sbjct: 127 VAANRLIAPLLAGVPERLLAPPLNVLRVALHPEGLAARTVNLPEWSGHLLERLHRQCEAT 186 Query: 182 ADPELLKLYQDLKSYPIPARSAPITTDNNVALPFKLRLNGEILSFISTTMVFGTPVDITL 241 AD LLKLY++LKSYPIPARSAP+ D +VA+P +LR+ ++LSF STTMVFGTPVDITL Sbjct: 187 ADAGLLKLYEELKSYPIPARSAPLAVD-SVAIPLRLRVGADVLSFFSTTMVFGTPVDITL 245 Query: 242 QELALETFFPADELTAERMRQMAASM 267 ELALETFFPAD+LTA R+++M S+ Sbjct: 246 SELALETFFPADDLTAARLKEMVTSL 271 >ref|YP_001241338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 271 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/262 (77%), Positives = 232/262 (88%), Gaps = 1/262 (0%) Query: 2 ARAEPAKPVPIGEHLREWRQRRHLSQLDLAVDAEISARHLSFVETGRSAPSRDMVLKLAE 61 ARA+ AKPV +GEHLR+WRQRRHLSQLDLA+DAEISARHLSFVETGR+APSRDMVLKLAE Sbjct: 7 ARADRAKPVHVGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAE 66 Query: 62 RLDVPLRERNVLLVAAGFAPAFPQRSLDDPALKSAREAINLVLKAHEPNPALAYDRHWNL 121 RLDVPLRERNVLLVAAG+APAF QR LDDPALK AREA+NLVL AHEPNPALA DRHWNL Sbjct: 67 RLDVPLRERNVLLVAAGYAPAFQQRPLDDPALKPAREAMNLVLTAHEPNPALAVDRHWNL 126 Query: 122 VSANRMVAPLLEGVPQRLLGQPFNILRLAFHPEGLAPRTVNFAEWAAHLLERLHRQCEAT 181 V+ANRM+APLL G+P L+ P N+LR+A HPEGLA RTVN AEW+ HLLERLHRQCEAT Sbjct: 127 VAANRMIAPLLAGIPDHLVAAPLNVLRVALHPEGLAARTVNLAEWSGHLLERLHRQCEAT 186 Query: 182 ADPELLKLYQDLKSYPIPARSAPITTDNNVALPFKLRLNGEILSFISTTMVFGTPVDITL 241 AD +LL LYQ+L+SYP PARS P+ D +VA+P +LR+ ++LSF STTMVFGTPVDITL Sbjct: 187 ADADLLALYQELRSYPFPARSGPLAAD-SVAIPLRLRVGNDVLSFFSTTMVFGTPVDITL 245 Query: 242 QELALETFFPADELTAERMRQM 263 ELALETFFPADELTA ++++M Sbjct: 246 SELALETFFPADELTASKLKEM 267 >ref|YP_487362.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08451.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 273 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/264 (76%), Positives = 232/264 (87%), Gaps = 1/264 (0%) Query: 4 AEPAKPVPIGEHLREWRQRRHLSQLDLAVDAEISARHLSFVETGRSAPSRDMVLKLAERL 63 A A+PV IG++LR+WRQRRHLSQLDLA+DAEISARHLSFVETGR+APSRDMV++LAERL Sbjct: 11 AAGAQPVRIGDYLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVMRLAERL 70 Query: 64 DVPLRERNVLLVAAGFAPAFPQRSLDDPALKSAREAINLVLKAHEPNPALAYDRHWNLVS 123 DVPLRERNVLLVAAGFAPAFPQR+LDDPAL +AR A++ VL AHEPNPALA DRHWNLVS Sbjct: 71 DVPLRERNVLLVAAGFAPAFPQRTLDDPALHAARAAVDQVLTAHEPNPALAVDRHWNLVS 130 Query: 124 ANRMVAPLLEGVPQRLLGQPFNILRLAFHPEGLAPRTVNFAEWAAHLLERLHRQCEATAD 183 ANRMV PLL+G+ LL P N+LRL+FHPEGLA RT N EW AHLLERLHRQCEATAD Sbjct: 131 ANRMVMPLLDGIAPDLLAPPLNVLRLSFHPEGLAARTANLGEWCAHLLERLHRQCEATAD 190 Query: 184 PELLKLYQDLKSYPIPARSAPITTDNNVALPFKLRLNGEILSFISTTMVFGTPVDITLQE 243 P+L+ LYQ+LK+YP+PAR+API D VA+PF+LRL GE+LSFISTTMVFGTPVD+TL E Sbjct: 191 PKLIALYQELKTYPVPARAAPIAPD-AVAVPFRLRLGGEVLSFISTTMVFGTPVDVTLSE 249 Query: 244 LALETFFPADELTAERMRQMAASM 267 +A+ETFF ADE T+ R+R MAA + Sbjct: 250 IAIETFFAADEATSARLRSMAAGL 273 >ref|YP_568853.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] gb|ABE38952.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 273 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/261 (75%), Positives = 231/261 (88%), Gaps = 1/261 (0%) Query: 7 AKPVPIGEHLREWRQRRHLSQLDLAVDAEISARHLSFVETGRSAPSRDMVLKLAERLDVP 66 A+PV +G++LR+WRQRRHLSQLDLAVDAEISARHLSFVETGR+APSRDMV++LAERLDVP Sbjct: 14 AQPVRVGDYLRQWRQRRHLSQLDLAVDAEISARHLSFVETGRAAPSRDMVMRLAERLDVP 73 Query: 67 LRERNVLLVAAGFAPAFPQRSLDDPALKSAREAINLVLKAHEPNPALAYDRHWNLVSANR 126 LRERNVLLVAAGFAPAFPQR+LDDPAL +AR A++ VLKAHEP+PALA D HWNLVSANR Sbjct: 74 LRERNVLLVAAGFAPAFPQRTLDDPALTAARAAVDQVLKAHEPSPALAVDLHWNLVSANR 133 Query: 127 MVAPLLEGVPQRLLGQPFNILRLAFHPEGLAPRTVNFAEWAAHLLERLHRQCEATADPEL 186 MV P+L+G+ LL P N+LRL+FHP+GL RT N EW AHLLERLHRQCEATADP+L Sbjct: 134 MVMPILDGIAPHLLAPPLNVLRLSFHPDGLGARTANLGEWCAHLLERLHRQCEATADPQL 193 Query: 187 LKLYQDLKSYPIPARSAPITTDNNVALPFKLRLNGEILSFISTTMVFGTPVDITLQELAL 246 L LYQ+LK+YP+PAR+API+ D VA+PFKL+ GE+LSFISTTMVFGTP+D+TL E+A+ Sbjct: 194 LALYQELKTYPVPARAAPISAD-AVAVPFKLKRGGEVLSFISTTMVFGTPIDVTLSEIAI 252 Query: 247 ETFFPADELTAERMRQMAASM 267 ETFF AD+ TA R+R MAAS+ Sbjct: 253 ETFFAADDATAARLRSMAASL 273