BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0033.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [...   188   2e-46
ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Par...   166   1e-39
ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035] ...   158   3e-37
ref|ZP_05787108.1| putative transcriptional regulator [Silicibac...   153   7e-36
ref|ZP_01036685.1| Putative transcriptional regulator [Roseovari...   148   2e-34

>ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 145

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 109/143 (76%), Gaps = 6/143 (4%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRLTSFTDF LRALM LAG+P+R F T EIA  F ISRNHL KV+R+LA AG + TQRGA
Sbjct: 1   MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
           GGGF LAR A+ ITLGE+VR LE  SALVECFR DGG C L P CRLK KL AAREAF+ 
Sbjct: 61  GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120

Query: 121 ELDGTTLAECAY------LPRPV 137
           ELD TTLAECAY       P+PV
Sbjct: 121 ELDRTTLAECAYPASGKAPPKPV 143


>ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 145

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 101/132 (76%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRL +FTD+ LR LMRLAG P++  +T +IA EF IS++HLAKVV DL   GF+ ++RG 
Sbjct: 1   MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
            GG  L RPA  ITLG+VVR LE   A+VECFR DGG+C+L PRCRL+ +L+AAREAFM 
Sbjct: 61  SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120

Query: 121 ELDGTTLAECAY 132
           ELD TTL +CA+
Sbjct: 121 ELDRTTLEDCAW 132


>ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035]
 gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035]
          Length = 148

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 103/136 (75%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRLTSFTDF LR LMR+A  PDR+F+++E+AAEF++SR+HLAK+++ L++AG I T+RG 
Sbjct: 1   MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
           GGG  LARP   I LG+V+R LE G ALV CF  D G+C L  RCRLKA+L AA  AF+ 
Sbjct: 61  GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120

Query: 121 ELDGTTLAECAYLPRP 136
           +LD +TLA+ A   RP
Sbjct: 121 DLDRSTLADIALDQRP 136


>ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 142

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 97/134 (72%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRLT+FTDF LR LMR+AG P+R+F+T+E+A EF++SR HLAKV+  LA AG++ T+RG 
Sbjct: 1   MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
           GGG  LARP E I LG+VV  LE G A+VECF  DG  C L P C LK +L  A   F+ 
Sbjct: 61  GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120

Query: 121 ELDGTTLAECAYLP 134
           +L+ +TLA+C Y P
Sbjct: 121 DLNRSTLADCIYRP 134


>ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217]
 gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217]
          Length = 138

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 104/144 (72%), Gaps = 6/144 (4%)

Query: 1   MRLTSFTDFALRALMRLAGEPDRSFATSEIAAEFEISRNHLAKVVRDLAEAGFIATQRGA 60
           MRLTSFTD+ LR LMR+A EP+R+++++E+A EF +SRNHLAK+++ L+  G I T+RG 
Sbjct: 1   MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60

Query: 61  GGGFSLARPAETITLGEVVRALEGGSALVECFRDDGGDCLLLPRCRLKAKLAAAREAFMR 120
           GGG  LA+PA  + LG +VR LE G  LVECF  D GDC +  +CRLKA+L +A  AF+ 
Sbjct: 61  GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120

Query: 121 ELDGTTLAECAYLPRPVRHPARAS 144
           +L+G+TLA  A       +PARA+
Sbjct: 121 DLEGSTLAAIAL------NPARAA 138