BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0029.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772429.1| transcriptional regulator [Bradyrhizobium japon... 280 6e-74 ref|YP_001241345.1| TetR family transcriptional regulator [Brady... 266 1e-69 ref|YP_001206923.1| TetR family transcriptional regulator [Brady... 255 2e-66 ref|ZP_08630620.1| transcriptional regulator, TetR family [Brady... 209 1e-52 ref|YP_780506.1| TetR family transcriptional regulator [Rhodopse... 187 1e-45 >ref|NP_772429.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51054.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 246 Score = 280 bits (717), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 141/182 (77%), Positives = 156/182 (85%) Query: 1 LKAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAIGFRQFGLAMAA 60 L+AAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAA+GFRQF AMA+ Sbjct: 55 LQAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAVGFRQFNAAMAS 114 Query: 61 ADASAATTPEKGVASAKAYVAYAQAHPGMYGLMFRSERLDHSRPSLHEASEASFAGLTRG 120 A +A T + +A KAYVAYAQAHPGMYG+MFR+ERLD+SRPSLHEA+EASFAGL Sbjct: 115 ACDTATTPLARALARPKAYVAYAQAHPGMYGIMFRTERLDYSRPSLHEAAEASFAGLANA 174 Query: 121 VGASRHEQISKEQLTLDQAAAIASAWSLVHGFTMLLLDGRLKAILDRSPEGTSAETLLTA 180 +GA R EQIS + LTLDQ AAIA AWS+VHGFT LLLDGRLK IL+R PEGT+AE LL Sbjct: 175 IGAMRQEQISGDALTLDQGAAIARAWSMVHGFTTLLLDGRLKDILERLPEGTTAERLLEV 234 Query: 181 ML 182 ML Sbjct: 235 ML 236 >ref|YP_001241345.1| TetR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37439.1| transcriptional regulator, TetR family [Bradyrhizobium sp. BTAi1] Length = 240 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 137/183 (74%), Positives = 153/183 (83%) Query: 1 LKAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAIGFRQFGLAMAA 60 L+AAERVLERDGLAGLTLRAVAREAGVSHAAPTHHF DLTGL+SELAAIGF +F AM A Sbjct: 48 LEAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFKDLTGLVSELAAIGFTRFNAAMKA 107 Query: 61 ADASAATTPEKGVASAKAYVAYAQAHPGMYGLMFRSERLDHSRPSLHEASEASFAGLTRG 120 A T E+ +A A AYVAYAQA+PGMYGLMFR+ERLD+SRPSLHEA+EASFAGL Sbjct: 108 AGEGPGTPIERAMARAHAYVAYAQANPGMYGLMFRTERLDYSRPSLHEAAEASFAGLAGS 167 Query: 121 VGASRHEQISKEQLTLDQAAAIASAWSLVHGFTMLLLDGRLKAILDRSPEGTSAETLLTA 180 V A +Q+ E+LT+DQAAAIA AWSLVHG+TMLLLDGRL IL RSP GT+AE+LL A Sbjct: 168 VAARSGDQVGNEELTIDQAAAIARAWSLVHGYTMLLLDGRLADILRRSPPGTNAESLLEA 227 Query: 181 MLR 183 MLR Sbjct: 228 MLR 230 >ref|YP_001206923.1| TetR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL78706.1| putative Transcriptional regulatory protein, TetR family [Bradyrhizobium sp. ORS 278] Length = 236 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/188 (71%), Positives = 151/188 (80%) Query: 1 LKAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAIGFRQFGLAMAA 60 L+AAERVLERDGLAGLTLRAVAREAGVSHAAPTHHF DLTGL+SELAAIGF +F AM A Sbjct: 44 LEAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFKDLTGLVSELAAIGFTRFNAAMKA 103 Query: 61 ADASAATTPEKGVASAKAYVAYAQAHPGMYGLMFRSERLDHSRPSLHEASEASFAGLTRG 120 A S T +K +A A AYVAYAQA+PGMYGLMFR+ERLD+SRPSLH+A+EASFAGL Sbjct: 104 AGESPGTPIDKAMARAHAYVAYAQANPGMYGLMFRTERLDYSRPSLHDAAEASFAGLAGS 163 Query: 121 VGASRHEQISKEQLTLDQAAAIASAWSLVHGFTMLLLDGRLKAILDRSPEGTSAETLLTA 180 V A Q E L++DQAAAIA AWSLVHG+TMLLLDGRL IL R P GT A++LL A Sbjct: 164 VAARGEGQAGGEDLSIDQAAAIARAWSLVHGYTMLLLDGRLTDILRRLPPGTDADSLLDA 223 Query: 181 MLRLSAGR 188 MLR + R Sbjct: 224 MLRATVPR 231 >ref|ZP_08630620.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06999.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] Length = 247 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/185 (61%), Positives = 138/185 (74%), Gaps = 4/185 (2%) Query: 1 LKAAERVLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAIGFRQF--GLAM 58 L+AA+RV ER+G+ GLTLRAVAREAGVSHAAP HHFGD+TGLLSELAAIGF++F L + Sbjct: 59 LQAAKRVAEREGINGLTLRAVAREAGVSHAAPAHHFGDVTGLLSELAAIGFQKFSAALGL 118 Query: 59 AAADASAATTPEKGVASAKAYVAYAQAHPGMYGLMFRSERLDHSRPSLHEASEASFAGLT 118 AA +A A A AYVA+A+ +P M+ LMFR+ERLDHSRP L+EAS A+FA L Sbjct: 119 AACEAGPDMM-SAARARANAYVAFARDNPCMFQLMFRAERLDHSRPMLNEASRAAFAKLA 177 Query: 119 RGVGASRHEQISKEQLTLDQAAAIASAWSLVHGFTMLLLDGRLKAILDRSPEGTSAETLL 178 V A RHE + + LT++QAA +A WS VHGF ML LDGRL+ ILD +P G +AE LL Sbjct: 178 GIVAAQRHENLELDHLTIEQAADVARIWSQVHGFAMLYLDGRLQHILDATP-GVTAEELL 236 Query: 179 TAMLR 183 AML+ Sbjct: 237 AAMLK 241 >ref|YP_780506.1| TetR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ05526.1| putative transcriptional regulator, TetR family [Rhodopseudomonas palustris BisA53] Length = 235 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/183 (63%), Positives = 137/183 (74%), Gaps = 1/183 (0%) Query: 7 VLERDGLAGLTLRAVAREAGVSHAAPTHHFGDLTGLLSELAAIGFRQFGLAMAAADASAA 66 VLERDGL GLTLRA AREAGVSHAAPTHHFGDLTGL+SELAA GFR F AMA A Sbjct: 52 VLERDGLPGLTLRAAAREAGVSHAAPTHHFGDLTGLVSELAATGFRHFNAAMADAAEIDG 111 Query: 67 TTPEKGVASAKAYVAYAQAHPGMYGLMFRSERLDHSRPSLHEASEASFAGLTRGVGASRH 126 K A A+AY+AYA+AHP MY LMFR+ERLD +RP+L EA+ A+FAG+ +G+ R Sbjct: 112 PPLLKAAARARAYLAYARAHPAMYLLMFRTERLDMTRPALREAANAAFAGIAGAIGSIRG 171 Query: 127 EQISKEQLTLDQAAAIASAWSLVHGFTMLLLDGRLKAILDRSPEGTSAETLLTAMLRLSA 186 E + + L+LDQAA I AWSLVHG+TMLL+DGRL I++R P GT AETL AML +S Sbjct: 172 EAVPAQTLSLDQAAEIVRAWSLVHGYTMLLIDGRLTDIIERLPAGTDAETLFGAML-MSM 230 Query: 187 GRS 189 GR Sbjct: 231 GRP 233