BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0020.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772437.1| hypothetical protein blr5797 [Bradyrhizobium ja...   194   3e-48
ref|YP_577805.1| hypothetical protein Nham_2563 [Nitrobacter ham...   168   2e-40
ref|ZP_01046624.1| hypothetical protein NB311A_18386 [Nitrobacte...   156   9e-37
ref|YP_001993371.1| hypothetical protein Rpal_4400 [Rhodopseudom...   155   2e-36
ref|YP_318769.1| hypothetical protein Nwi_2163 [Nitrobacter wino...   155   3e-36

>ref|NP_772437.1| hypothetical protein blr5797 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51062.1| blr5797 [Bradyrhizobium japonicum USDA 110]
          Length = 159

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 118/155 (76%), Gaps = 2/155 (1%)

Query: 1   LSIRSTLPAALIALATVFVAAPAHADPCVDIAKQLAGQIDGLKVNFSAANITYLTHPAAK 60
           L++R  +  A      V +A+PA AD C DIAKQLA  ID LKVNF AANI YLTHPAAK
Sbjct: 5   LNVRGAILVAAAITGLVTLASPARADQCDDIAKQLASGIDRLKVNFKAANIIYLTHPAAK 64

Query: 61  ELSLGCR--GKDYSIELYAKTDRKMKPEFFNLVGSATALIFTVPKDDAVTGTSRCLKRMG 118
           ELSLGCR  G++YS ELYAK DRK  P+F++LV SA A+IFTVPKDD   G +RCLKRMG
Sbjct: 65  ELSLGCRAQGQNYSNELYAKGDRKPTPQFYDLVASAAAIIFTVPKDDTAKGATRCLKRMG 124

Query: 119 ILRGNTITMRYRRLNLECTRNKTDASITVRRGNNE 153
           +LRG+ ++MR++RLN++C+R KT+ASI + R  +E
Sbjct: 125 LLRGDKVSMRFKRLNMDCSRTKTEASIAITRPKDE 159


>ref|YP_577805.1| hypothetical protein Nham_2563 [Nitrobacter hamburgensis X14]
 gb|ABE63345.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 156

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 111/154 (72%), Gaps = 2/154 (1%)

Query: 2   SIRSTLPAAL-IALATVFVAAPAHADPCVDIAKQLAGQIDGLKVNFSAANITYLTHPAAK 60
           S+R+ L A+L +A A     +PA AD C D+A QL   IDGL V  +AAN  +L+HPAA+
Sbjct: 3   SLRACLAASLCLATAIALAPSPARADRCDDLAAQLKRHIDGLHVGKTAANAIFLSHPAAR 62

Query: 61  ELSLGCRGKDYSIELYAKTD-RKMKPEFFNLVGSATALIFTVPKDDAVTGTSRCLKRMGI 119
           +L LGC  + ++ EL A TD RK KPEF++LV  A+A+IFT+PK D + G +RC+KRMG+
Sbjct: 63  QLILGCPNRKFTNELIAGTDSRKPKPEFYDLVAQASAIIFTIPKADTLRGVTRCIKRMGL 122

Query: 120 LRGNTITMRYRRLNLECTRNKTDASITVRRGNNE 153
           LRG+ + MRYRRLN+ CTR KT A+I V RGN+E
Sbjct: 123 LRGDDVRMRYRRLNMHCTRTKTSAAIAVSRGNDE 156


>ref|ZP_01046624.1| hypothetical protein NB311A_18386 [Nitrobacter sp. Nb-311A]
 gb|EAQ35460.1| hypothetical protein NB311A_18386 [Nitrobacter sp. Nb-311A]
          Length = 156

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 2/154 (1%)

Query: 2   SIRSTLPAAL-IALATVFVAAPAHADPCVDIAKQLAGQIDGLKVNFSAANITYLTHPAAK 60
           S+R  L A+  +A AT+  ++PA AD C D+A QL  QIDGL V  +AAN  +L+HPA  
Sbjct: 3   SLRRRLTASFYLAAATMLASSPALADRCDDLAAQLRSQIDGLHVGKTAANAIFLSHPATT 62

Query: 61  ELSLGCRGKDYSIELYAKTD-RKMKPEFFNLVGSATALIFTVPKDDAVTGTSRCLKRMGI 119
           +L LGC  + ++ EL A  D RK KPEF++LV  A+A+IFT+P  D + G +RC+KRMG+
Sbjct: 63  QLILGCSNRKFTNELIAGADSRKPKPEFYDLVARASAIIFTIPIADTLRGVTRCIKRMGL 122

Query: 120 LRGNTITMRYRRLNLECTRNKTDASITVRRGNNE 153
           L G+ +  RYRRLN+ CTR KT A+I V RG +E
Sbjct: 123 LHGDDVQTRYRRLNMHCTRTKTSAAIAVSRGRDE 156


>ref|YP_001993371.1| hypothetical protein Rpal_4400 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02896.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 164

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 97/140 (69%), Gaps = 1/140 (0%)

Query: 15  ATVFVAAPAHADPCVDIAKQLAGQIDGLKVNFSAANITYLTHPAAKELSLGCRGKDYSIE 74
           A  F A+PA AD C D+AKQL  QIDG+ +  +AAN+ YL+HPAAK L LGC  +    E
Sbjct: 25  AVTFTASPARADRCDDLAKQLKAQIDGIGIGKTAANMIYLSHPAAKALRLGCPSRTVKNE 84

Query: 75  LYAKTD-RKMKPEFFNLVGSATALIFTVPKDDAVTGTSRCLKRMGILRGNTITMRYRRLN 133
           +Y +   RK  PEF +L+ SA A++FT+PK D + G  RC  R+GILRGN I  R+RRL+
Sbjct: 85  IYGQVSARKPSPEFQDLIASAAAIVFTIPKPDTLRGVKRCFGRVGILRGNDIKTRFRRLD 144

Query: 134 LECTRNKTDASITVRRGNNE 153
           + CTR KTDASI++ R ++E
Sbjct: 145 MRCTRTKTDASISITRDSSE 164


>ref|YP_318769.1| hypothetical protein Nwi_2163 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05417.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 156

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 2/154 (1%)

Query: 2   SIRSTLPAAL-IALATVFVAAPAHADPCVDIAKQLAGQIDGLKVNFSAANITYLTHPAAK 60
           S R  L A+L +A A +  + PA AD C D+A QL  QIDGL +  +AAN+ YL+HPA  
Sbjct: 3   SPRRCLTASLCVAAAAMLASPPALADRCDDLAAQLKSQIDGLNIGKTAANVIYLSHPATT 62

Query: 61  ELSLGCRGKDYSIELYAKTD-RKMKPEFFNLVGSATALIFTVPKDDAVTGTSRCLKRMGI 119
           +L LGC  + ++ EL A TD RK  PEF++LV  A+A+IFT+P  D + G +RC+KRMG+
Sbjct: 63  QLILGCSNRKFTNELIAGTDTRKPNPEFYDLVARASAIIFTIPIADTLRGATRCMKRMGL 122

Query: 120 LRGNTITMRYRRLNLECTRNKTDASITVRRGNNE 153
           LRG+ +  R+RRLN+ CTR KT ++I V RG +E
Sbjct: 123 LRGDDVQTRFRRLNMHCTRTKTSSAIAVSRGIDE 156