BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0014.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774261.1| hypothetical protein blr7621 [Bradyrhizobium ja...   162   2e-38
ref|YP_576518.1| hypothetical protein Nham_1230 [Nitrobacter ham...   155   1e-36
ref|YP_317612.1| hypothetical protein Nwi_0998 [Nitrobacter wino...   153   1e-35
ref|ZP_01047068.1| hypothetical protein NB311A_10950 [Nitrobacte...   150   8e-35
ref|YP_001023061.1| hypothetical protein Mpe_B0047 [Methylibium ...    67   6e-10

>ref|NP_774261.1| hypothetical protein blr7621 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52886.1| blr7621 [Bradyrhizobium japonicum USDA 110]
          Length = 131

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 99/109 (90%)

Query: 1   MADSKKKRGAADRALIALSESYEVAYWSKKFKVTPAKLKAAVKKVGHSAKKVEAHFKEQR 60
           MAD+K KRG ADRALIAL+E YEVAYWSKKFKVTPAKLK AVKKVGHSAKKVEA+ K Q+
Sbjct: 1   MADNKAKRGGADRALIALTEKYEVAYWSKKFKVTPAKLKYAVKKVGHSAKKVEAYIKLQK 60

Query: 61  HKAADRARIAISEPYEVRYWSKKFKVTPARLKTAVAAVGHSSKKVEAYF 109
           H+A+D++RIA+SE YEVRYWSKKFK+TPA+LK AVAA GHS+KKVEAY 
Sbjct: 61  HRASDKSRIALSEAYEVRYWSKKFKITPAKLKAAVAAAGHSAKKVEAYL 109


>ref|YP_576518.1| hypothetical protein Nham_1230 [Nitrobacter hamburgensis X14]
 gb|ABE62058.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 157

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%)

Query: 1   MADSKKKRGAADRALIALSESYEVAYWSKKFKVTPAKLKAAVKKVGHSAKKVEAHFKEQR 60
           MAD+K KRG +DR LIALSE+YEV YWS+KFKVTP KLKAAVK  G SA+KVEA+ K Q+
Sbjct: 1   MADNKAKRGGSDRGLIALSEAYEVRYWSRKFKVTPLKLKAAVKAAGRSARKVEAYLKLQK 60

Query: 61  HKAADRARIAISEPYEVRYWSKKFKVTPARLKTAVAAVGHSSKKVEAYFA 110
            K  DRA IA+S+PYEV YWSK+FKVTPARL+ AV AVG SSKKV  Y +
Sbjct: 61  LKPEDRALIALSQPYEVSYWSKRFKVTPARLRAAVKAVGRSSKKVGVYLS 110


>ref|YP_317612.1| hypothetical protein Nwi_0998 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04260.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 155

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 1   MADSKKKRGAADRALIALSESYEVAYWSKKFKVTPAKLKAAVKKVGHSAKKVEAHFKEQR 60
           MAD K KRG +D  LIAL E+YEV YWSKKF VTP+KLKAAVK VG SAK VE + K Q+
Sbjct: 1   MADDKAKRGGSDGRLIALREAYEVRYWSKKFNVTPSKLKAAVKAVGRSAKTVEGYLKLQK 60

Query: 61  HKAADRARIAISEPYEVRYWSKKFKVTPARLKTAVAAVGHSSKKVEAYFAAK 112
               DRA IA+++PYEVRYW+KKFKVTPARL+TAV  VG S+KKV A+ AA+
Sbjct: 61  RATNDRALIALTQPYEVRYWAKKFKVTPARLRTAVGEVGRSAKKVGAFLAAR 112


>ref|ZP_01047068.1| hypothetical protein NB311A_10950 [Nitrobacter sp. Nb-311A]
 gb|EAQ34973.1| hypothetical protein NB311A_10950 [Nitrobacter sp. Nb-311A]
          Length = 154

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 84/109 (77%)

Query: 1   MADSKKKRGAADRALIALSESYEVAYWSKKFKVTPAKLKAAVKKVGHSAKKVEAHFKEQR 60
           MAD K KRG +D  LIAL E+YEV YWSKKFKVTP KLKAAVK VG SA+ VEA+ K Q+
Sbjct: 1   MADDKAKRGGSDGRLIALREAYEVRYWSKKFKVTPLKLKAAVKAVGRSARTVEAYLKLQK 60

Query: 61  HKAADRARIAISEPYEVRYWSKKFKVTPARLKTAVAAVGHSSKKVEAYF 109
               DRA IA+++PYEVRYWSKKFKVTPARL+ AV  VG SSK V A+ 
Sbjct: 61  RGTNDRALIALTQPYEVRYWSKKFKVTPARLRAAVGEVGRSSKNVGAFL 109


>ref|YP_001023061.1| hypothetical protein Mpe_B0047 [Methylibium petroleiphilum PM1]
 gb|ABM96826.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 68

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 40/57 (70%)

Query: 1  MADSKKKRGAADRALIALSESYEVAYWSKKFKVTPAKLKAAVKKVGHSAKKVEAHFK 57
          MAD K K G  DR LI +++ YE+  W+KKF V+P +LK AV  VG+SAK VEAH K
Sbjct: 1  MADDKTKSGGRDRELIDVNQDYELRDWAKKFGVSPEELKKAVAAVGNSAKNVEAHLK 57



 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 65  DRARIAISEPYEVRYWSKKFKVTPARLKTAVAAVGHSSKKVEAYF 109
           DR  I +++ YE+R W+KKF V+P  LK AVAAVG+S+K VEA+ 
Sbjct: 12  DRELIDVNQDYELRDWAKKFGVSPEELKKAVAAVGNSAKNVEAHL 56