BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0011.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004107824.1| import inner membrane translocase subunit Ti... 336 4e-90 ref|NP_949218.1| import inner membrane translocase subunit Tim44... 335 4e-90 ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacte... 335 7e-90 ref|YP_001993375.1| import inner membrane translocase subunit Ti... 334 9e-90 ref|YP_577809.1| import inner membrane translocase, subunit Tim4... 331 1e-88 >ref|YP_004107824.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gb|ADU43091.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 358 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 210/360 (58%), Positives = 248/360 (68%), Gaps = 42/360 (11%) Query: 1 MNFSQRTRGIVRAIAVAMALALPVMMTVS-AADARVGGGGS---RGSRTFSAPPSTNTAP 56 MNF RTRG++ A+AV MALALP+ M +S AADAR G GS RGSR+F+APPST TAP Sbjct: 1 MNFLHRTRGVIAALAVTMALALPMAMVLSSAADARAGRSGSMGSRGSRSFAAPPSTTTAP 60 Query: 57 GSVAPMNRTFSQPGSPNMGAPAA--ANSGGLFGRGGMGRGLLGGLAAGFLGAGLFGMLFG 114 G+ P+NRT+SQPGSP M APAA AN GG F R GMG +LGGLAAGFLGAGL GMLFG Sbjct: 61 GAAQPLNRTYSQPGSPGMNAPAAGAANKGGFFNRPGMG--MLGGLAAGFLGAGLLGMLFG 118 Query: 115 GGLFSGLGGLSSMLGLLLHIGLIVLVVRLAMSWWQRRNT----------------PAAAY 158 GG SGLG +S++GL+L + L+V++ RLA WWQRRN P A Sbjct: 119 GGFLSGLGSFASIIGLILQVALVVILARLAWGWWQRRNNQQAAYAAGPAAGQGPRPDGAD 178 Query: 159 AGGP------------------DVGPGPQANARSGFGFGLSGGSNAPVEIAPGDYETFER 200 A GP Q+ RSGFGFG ++ P+EI P DYE FER Sbjct: 179 ATGPMGRATHAMDQSAAQGTAQGTAQASQSGYRSGFGFGGGARNDRPLEIKPDDYEAFER 238 Query: 201 LLGDIQTAWSNEDIAKLHTLATPEMVSYFSKDLEENKARNVTNKVTNVKLLQGDLAEAWR 260 LLG++Q AWSNEDI +L LATPEM SYF+KDLEENKA N NKV++VKLLQGDLAEAW Sbjct: 239 LLGEVQAAWSNEDIDRLRELATPEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWT 298 Query: 261 EGDSEYATVAMRYSLVDTVLERGTGRQVGGSTQPEEVTEVWTFVRQRGGNWELSAIQQTN 320 EG++++ATVAMR+SLVD LERGT R V GS P E TE+WTF R+ G +WEL+AIQQTN Sbjct: 299 EGETDFATVAMRFSLVDKTLERGTDRLVAGSETPIEATEIWTFTRRPGASWELAAIQQTN 358 >ref|NP_949218.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] emb|CAE29322.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 337 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 217/339 (64%), Positives = 251/339 (74%), Gaps = 21/339 (6%) Query: 1 MNFSQRTRGIVRAIAVAMALALPVMMTV-SAADARVGGGGSRGSR---TFSAPPSTNTAP 56 MNF RTRG V A+AVAM+LA+P+ + V SAADAR+GGG S GSR TFSAPPST+TAP Sbjct: 1 MNFFHRTRGFVTALAVAMSLAMPLSLAVTSAADARIGGGSSSGSRGSRTFSAPPSTSTAP 60 Query: 57 GSVAPMNRTFSQPGSPNMGAPAAANSGG---LFGRGGMGRGLLGGLAAGFLGAGLFGMLF 113 G+ P NRT+SQPGSP M PAA + F R GMG +LGGLAAGFLGAGL GMLF Sbjct: 61 GAAQPFNRTYSQPGSPGMSGPAAGAAANKGGFFNRPGMG--MLGGLAAGFLGAGLLGMLF 118 Query: 114 GGGLFSGLGGLSSMLGLLLHIGLIVLVVRLAMSWWQRRNTPAAAYAGGPDVG-------- 165 GGG SGLG +S++GL+L + L+V++ RLA WWQRRN P AYA G G Sbjct: 119 GGGFLSGLGSFASIIGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQ 178 Query: 166 ----PGPQANARSGFGFGLSGGSNAPVEIAPGDYETFERLLGDIQTAWSNEDIAKLHTLA 221 PGPQA R+GFGFG ++ P+EI P DYE FERLLGDIQ AWSNEDI +L LA Sbjct: 179 GPQSPGPQAAYRTGFGFGGGASNDRPLEIKPEDYEAFERLLGDIQAAWSNEDIDRLRQLA 238 Query: 222 TPEMVSYFSKDLEENKARNVTNKVTNVKLLQGDLAEAWREGDSEYATVAMRYSLVDTVLE 281 TPEM SYF+KDLEENKA N NKV++VKLLQGDLAEAWREG+S+YATVAMR+SLVD LE Sbjct: 239 TPEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLE 298 Query: 282 RGTGRQVGGSTQPEEVTEVWTFVRQRGGNWELSAIQQTN 320 RGT R V GS P EVTE+WTF R+ G +WEL+AIQQTN Sbjct: 299 RGTNRLVAGSETPIEVTEIWTFTRRPGASWELAAIQQTN 337 >ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] gb|EAQ35457.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] Length = 330 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 208/326 (63%), Positives = 247/326 (75%), Gaps = 16/326 (4%) Query: 1 MNFSQRTRGIVRAIAVAMALALPVMMTVSAADARVGGG---GSRGSRTFSAPPSTNTAPG 57 M ++R G+++A A+ ++LALP+M S ADAR+GGG GSRG+RTFSAPP T+TAP Sbjct: 14 MKLAKRASGMMKAFALVLSLALPLMFAASVADARIGGGKSYGSRGARTFSAPPVTSTAPN 73 Query: 58 SVAPMNRTFSQPGSPNMGAPAAANSGGLFGRGGMGRGLLGGLAAGFLGAGLFGMLFGGGL 117 + P++RT +QPG G A G F R GMG +LGGLAAGFLGAGL G+LFGGGL Sbjct: 74 AARPLDRTMAQPGRLAAGGAAT----GRFNRPGMG--MLGGLAAGFLGAGLLGLLFGGGL 127 Query: 118 FSGLGGLSSMLGLLLHIGLIVLVVRLAMSWWQRRNTPAAAYAG---GPDVGPGP-QANAR 173 F GLGGLSS++GL+L IGLI L+VR AMSWWQRRN PA YAG GP GP Q NAR Sbjct: 128 FGGLGGLSSIIGLVLQIGLIYLLVRFAMSWWQRRNAPA--YAGPTPGPTSGPAAAQTNAR 185 Query: 174 SGFGFGLSGGSNAPVEIAPGDYETFERLLGDIQTAWSNEDIAKLHTLATPEMVSYFSKDL 233 SG GFG S + AP+EI DYE FERLLG+IQTAWSNED+ LH LATPEMVSYF++DL Sbjct: 186 SGLGFG-SMANAAPLEITQEDYEAFERLLGEIQTAWSNEDVNTLHALATPEMVSYFTEDL 244 Query: 234 EENKARNVTNKVTNVKLLQGDLAEAWREGDSEYATVAMRYSLVDTVLERGTGRQVGGSTQ 293 + N AR V NKV++VKLLQGDLAEAWREG ++YATVA+RYSL+D +ER GR V GS Q Sbjct: 245 QANDARGVVNKVSDVKLLQGDLAEAWREGMTDYATVALRYSLIDKTIERAGGRIVEGSDQ 304 Query: 294 PEEVTEVWTFVRQRGGNWELSAIQQT 319 P+E T+VWTF R+ GG WELSAIQQT Sbjct: 305 PQEATDVWTFARRGGGKWELSAIQQT 330 >ref|YP_001993375.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gb|ACF02900.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 337 Score = 334 bits (857), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 216/339 (63%), Positives = 251/339 (74%), Gaps = 21/339 (6%) Query: 1 MNFSQRTRGIVRAIAVAMALALPVMMTV-SAADARVGGGGSRGSR---TFSAPPSTNTAP 56 MNF RTRG V A+AVAM+LA+P+ + + SAADAR+GGG S GSR TFSAPPST+TAP Sbjct: 1 MNFFHRTRGFVTALAVAMSLAMPLSLALTSAADARIGGGSSSGSRGSRTFSAPPSTSTAP 60 Query: 57 GSVAPMNRTFSQPGSPNMGAPAAANSGG---LFGRGGMGRGLLGGLAAGFLGAGLFGMLF 113 G+ P NRT+SQPGSP M PAA + F R GMG +LGGLAAGFLGAGL GMLF Sbjct: 61 GAAQPFNRTYSQPGSPGMSGPAAGAAANKGGFFNRPGMG--MLGGLAAGFLGAGLLGMLF 118 Query: 114 GGGLFSGLGGLSSMLGLLLHIGLIVLVVRLAMSWWQRRNTPAAAYAGGPDVG-------- 165 GGG SGLG +S++GL+L + L+V++ RLA WWQRRN P AYA G G Sbjct: 119 GGGFLSGLGSFASIIGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQ 178 Query: 166 ----PGPQANARSGFGFGLSGGSNAPVEIAPGDYETFERLLGDIQTAWSNEDIAKLHTLA 221 PGPQA R+GFGFG ++ P+EI P DYE FERLLGDIQ AWSNEDI +L LA Sbjct: 179 GPQSPGPQAAYRTGFGFGGGASNDRPLEIKPEDYEAFERLLGDIQAAWSNEDIDRLRQLA 238 Query: 222 TPEMVSYFSKDLEENKARNVTNKVTNVKLLQGDLAEAWREGDSEYATVAMRYSLVDTVLE 281 TPEM SYF+KDLEENKA N NKV++VKLLQGDLAEAWREG+S+YATVAMR+SLVD LE Sbjct: 239 TPEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLE 298 Query: 282 RGTGRQVGGSTQPEEVTEVWTFVRQRGGNWELSAIQQTN 320 RGT R V GS P EVTE+WTF R+ G +WEL+AIQQTN Sbjct: 299 RGTNRLVAGSETPIEVTEIWTFTRRPGASWELAAIQQTN 337 >ref|YP_577809.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gb|ABE63349.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 312 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 246/322 (76%), Gaps = 13/322 (4%) Query: 1 MNFSQRTRGIVRAIAVAMALALPVMMTVSAADARVGGG---GSRGSRTFSAPPSTNTAPG 57 M QR G+++A A+ ++LALP+M VSAADAR+GGG GSRGSRTFSAPP TNTAP Sbjct: 1 MKLIQRASGVMKAFAIVLSLALPLMFAVSAADARIGGGKSFGSRGSRTFSAPPVTNTAPN 60 Query: 58 SVAPMNRTFSQPGSPNMGAPAAANSGGLFGRGGMGRGLLGGLAAGFLGAGLFGMLFGGGL 117 + P++R+ +QPG P A A + G F R GMG +LGGLAAGFLGAGL GMLFGGGL Sbjct: 61 AARPLDRSMAQPGRPG----AGAAATGGFKRPGMG--MLGGLAAGFLGAGLLGMLFGGGL 114 Query: 118 FSGLGGLSSMLGLLLHIGLIVLVVRLAMSWWQRRNTPAAAYAGGPDVGPGPQANARSGFG 177 F GLGGLSSM+GLLL IGLIVLVVR AMSWW+RRN PA A A QA+ RSGFG Sbjct: 115 FGGLGGLSSMIGLLLQIGLIVLVVRFAMSWWRRRNAPAYAGAAPGPAA---QASPRSGFG 171 Query: 178 FGLSGGSNAPVEIAPGDYETFERLLGDIQTAWSNEDIAKLHTLATPEMVSYFSKDLEENK 237 F S + P+EI P DYE FERLLG+IQTAWSNED+ LHTLATPEMVSYF++DL N Sbjct: 172 FA-SASNAPPLEITPSDYEAFERLLGEIQTAWSNEDVNTLHTLATPEMVSYFTEDLRAND 230 Query: 238 ARNVTNKVTNVKLLQGDLAEAWREGDSEYATVAMRYSLVDTVLERGTGRQVGGSTQPEEV 297 AR V NKV++VKLLQGDLAEAWREG ++YATVA+RYSL+D ER +GR V GS QP+EV Sbjct: 231 ARGVVNKVSDVKLLQGDLAEAWREGTTDYATVALRYSLIDKTTERASGRVVEGSDQPQEV 290 Query: 298 TEVWTFVRQRGGNWELSAIQQT 319 T+VWTF R GG WELSAIQQT Sbjct: 291 TDVWTFARLGGGKWELSAIQQT 312