BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0008.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrh...   247   3e-64
ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrh...   245   2e-63
ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizo...   244   3e-63
ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseud...   241   2e-62
ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacte...   237   4e-61

>ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS 278]
 emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS 278]
          Length = 359

 Score =  247 bits (631), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/134 (88%), Positives = 124/134 (92%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MSLQEMKEEFKQSEGDPHVKGRI+Q+R QR KKRMMA VPKASVIITNPTHYSVAL+Y+R
Sbjct: 223 MSLQEMKEEFKQSEGDPHVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSYER 282

Query: 61  SMSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            M AP+CVAKGVD IAFKIRE+AK HDIPIVENVPLARALYATVEID EIPVEHYHAVAE
Sbjct: 283 GMQAPVCVAKGVDNIAFKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAE 342

Query: 121 IIGYVMRLRRGLSG 134
           IIGYVM LRR LSG
Sbjct: 343 IIGYVMGLRRNLSG 356


>ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1]
 gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1]
          Length = 359

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/134 (88%), Positives = 124/134 (92%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MS+QEMKEEFKQSEGDPHVKGRI+Q+R QR KKRMMA VPKASVIITNPTHYSVALAY+R
Sbjct: 223 MSVQEMKEEFKQSEGDPHVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAYER 282

Query: 61  SMSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            MSAP+CVAKGVD IAFKIRE+AK HDIPIVENVPLARALYATVEID EIPVEHYHAVAE
Sbjct: 283 GMSAPVCVAKGVDNIAFKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAE 342

Query: 121 IIGYVMRLRRGLSG 134
           II YVM LRR LSG
Sbjct: 343 IISYVMGLRRTLSG 356


>ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 359

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/136 (83%), Positives = 126/136 (92%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MSLQE+KEEFKQSEGDPH+KG+I+QLR QRAKKRMMA VPKASVIITNPTH+SVAL+Y+R
Sbjct: 223 MSLQEIKEEFKQSEGDPHIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSYER 282

Query: 61  SMSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            M APICVAKGVD +AFKIRE+A+EHDIPIVENVPLARALYATVEID+EIP EHYHAVAE
Sbjct: 283 GMQAPICVAKGVDNLAFKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAE 342

Query: 121 IIGYVMRLRRGLSGLR 136
           +IGYVMRL+RG    R
Sbjct: 343 VIGYVMRLKRGFGAGR 358


>ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           CGA009]
 ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           TIE-1]
 emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas
           palustris CGA009]
 gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           TIE-1]
          Length = 357

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 123/134 (91%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MSLQE+KEEFKQSEGDPH+KGR++QLR QR KKRMMA+VP ASV+ITNPTH+SVAL Y+R
Sbjct: 221 MSLQEIKEEFKQSEGDPHIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKYER 280

Query: 61  SMSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            MSAPICVAKGVD +AFKIREVAKEHD+PIVENVPLARALYATVEID EIPVEHY AVAE
Sbjct: 281 GMSAPICVAKGVDAVAFKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAE 340

Query: 121 IIGYVMRLRRGLSG 134
           +IGYVM L+R  SG
Sbjct: 341 VIGYVMNLKRAWSG 354


>ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi
           Nb-255]
          Length = 359

 Score =  237 bits (605), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 124/136 (91%)

Query: 1   MSLQEMKEEFKQSEGDPHVKGRIKQLRVQRAKKRMMAQVPKASVIITNPTHYSVALAYDR 60
           MSL+EMKEEFKQSEGDPH+K RI+QLR  R KKRMMA VP+ASVIITNPTHYSVAL+Y+R
Sbjct: 223 MSLREMKEEFKQSEGDPHIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYER 282

Query: 61  SMSAPICVAKGVDIIAFKIREVAKEHDIPIVENVPLARALYATVEIDREIPVEHYHAVAE 120
            MSAP+CVAKGVD IA KIRE+A+EHDIP+VENVPLARALYA VEID E+PVEHYHAVAE
Sbjct: 283 GMSAPVCVAKGVDNIALKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAE 342

Query: 121 IIGYVMRLRRGLSGLR 136
           IIGYVM L+RGLSG R
Sbjct: 343 IIGYVMGLKRGLSGRR 358