BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0006.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_317750.1| flagellar biosynthesis protein FliR [Nitrobacte... 410 e-113 ref|YP_001241361.1| flagellar biosynthesis protein FliR [Bradyrh... 403 e-110 ref|YP_531402.1| flagellar biosynthesis protein FliR [Rhodopseud... 396 e-108 ref|ZP_01047516.1| flagellar biosynthesis protein [Nitrobacter s... 385 e-105 ref|YP_487378.2| flagellar biosynthesis protein FliR [Rhodopseud... 381 e-104 >ref|YP_317750.1| flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] gb|ABA04398.1| Flagellar biosynthesis protein FliR [Nitrobacter winogradskyi Nb-255] Length = 256 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/256 (79%), Positives = 233/256 (91%) Query: 1 MRIDVSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNA 60 MRID+SLLPAL A F+LVFARVGAMVMLLPGFGE IP RVKL+IALLLT IILPLHR A Sbjct: 1 MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAA 60 Query: 61 YHVDLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQG 120 YHVD+ S++ L VL+VHE+IIG+VLGATARVTL+AL+VAGSVIAQQLGLGFVT+VDPTQG Sbjct: 61 YHVDMQSVAPLAVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQG 120 Query: 121 QQGQIIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAA 180 QQG ++GNFLT+LG+ LLFATD+HYLVIAAL++SY+IFSPGE+MP+GDVAALAT AF+ A Sbjct: 121 QQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGA 180 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNT 240 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSI +GF+IF VLA+MM T Sbjct: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT 240 Query: 241 YLDYFLGVMRQLAPMN 256 Y+DY +GVM+ L N Sbjct: 241 YMDYLIGVMQDLTSSN 256 >ref|YP_001241361.1| flagellar biosynthesis protein FliR [Bradyrhizobium sp. BTAi1] gb|ABQ37455.1| Flagellar biosynthetic protein fliR [Bradyrhizobium sp. BTAi1] Length = 255 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/254 (78%), Positives = 233/254 (91%) Query: 1 MRIDVSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNA 60 MRID+S LP LAA+F+L FAR+GAMVMLLPG GE NIP R+KL+ ALLLT+I+LPLHR A Sbjct: 1 MRIDISFLPTLAAVFMLAFARIGAMVMLLPGLGEVNIPVRIKLATALLLTMIVLPLHRQA 60 Query: 61 YHVDLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQG 120 Y VDL ++S L V+MVHE++IGIVLGATARVTLSAL VAGSVIAQQ+GLGFVTAVDPTQG Sbjct: 61 YQVDLQALSPLLVMMVHEIVIGIVLGATARVTLSALQVAGSVIAQQMGLGFVTAVDPTQG 120 Query: 121 QQGQIIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAA 180 QQG +IGNFLT+LG+TLLF+TDSH+LVIAALS+SY+IF+PGE++P+GDVA+LAT AF+AA Sbjct: 121 QQGVLIGNFLTMLGVTLLFSTDSHHLVIAALSDSYKIFAPGEVIPSGDVASLATRAFAAA 180 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNT 240 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVG PLSI++GFLIFG+VLAAMM T Sbjct: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGAPLSILIGFLIFGLVLAAMMGT 240 Query: 241 YLDYFLGVMRQLAP 254 +L YF GV+ ++ P Sbjct: 241 FLGYFEGVIHEMMP 254 >ref|YP_531402.1| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris BisB18] gb|ABD87083.1| flagellar biosynthetic protein FliR [Rhodopseudomonas palustris BisB18] Length = 256 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/254 (80%), Positives = 234/254 (92%) Query: 1 MRIDVSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNA 60 MRID+S LPALAA F+LVFAR+ AMVML+PGFGE+NIP R+KL+IAL+LTL+ILPLHR+ Sbjct: 1 MRIDISFLPALAAAFMLVFARIAAMVMLMPGFGETNIPVRIKLAIALVLTLVILPLHRSD 60 Query: 61 YHVDLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQG 120 Y VD+TS++ L VLM+HE++IGIVLGATARVTLSAL VAGSVIAQQLGLGFVT+VDPTQG Sbjct: 61 YQVDMTSLTPLIVLMLHEIVIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTSVDPTQG 120 Query: 121 QQGQIIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAA 180 QQG +IGNFLT+LGLTLLFATD+H+LVIAAL+ESYRIFSPGE M +GDVA+LAT AF+AA Sbjct: 121 QQGAVIGNFLTLLGLTLLFATDTHHLVIAALNESYRIFSPGEFMSSGDVASLATRAFAAA 180 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNT 240 FKIG+QLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSI GFLIFG VLA MM+T Sbjct: 181 FKIGMQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFAGFLIFGAVLATMMHT 240 Query: 241 YLDYFLGVMRQLAP 254 +LDYF+ VM QL P Sbjct: 241 FLDYFIAVMHQLIP 254 >ref|ZP_01047516.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gb|EAQ34435.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 256 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/256 (79%), Positives = 234/256 (91%) Query: 1 MRIDVSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNA 60 MRID+SLLPAL A F+LVFAR+GAMVMLLPGFGE IP RVKL+IALLLTLIILPLHR A Sbjct: 1 MRIDISLLPALGAAFMLVFARIGAMVMLLPGFGEGFIPVRVKLAIALLLTLIILPLHRTA 60 Query: 61 YHVDLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQG 120 YHVD SI+ L VL+VHE+IIG+VLGATARVTL+AL+VAGS+IAQQLGLGFVT+VDPTQG Sbjct: 61 YHVDTQSIAPLTVLLVHEIIIGVVLGATARVTLAALHVAGSIIAQQLGLGFVTSVDPTQG 120 Query: 121 QQGQIIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAA 180 QQG ++GNFLT+LG+ LLFATD+HYLVIAAL++SY+IFSPGE+MP+GDVAALAT AF+ A Sbjct: 121 QQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGA 180 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNT 240 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSI++GF+IF VLA+MM T Sbjct: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSILIGFMIFAAVLASMMGT 240 Query: 241 YLDYFLGVMRQLAPMN 256 Y+DY +GVM L +N Sbjct: 241 YMDYLVGVMHDLTSLN 256 >ref|YP_487378.2| flagellar biosynthesis protein FliR [Rhodopseudomonas palustris HaA2] Length = 255 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/254 (79%), Positives = 230/254 (90%) Query: 1 MRIDVSLLPALAAIFVLVFARVGAMVMLLPGFGESNIPARVKLSIALLLTLIILPLHRNA 60 MRID+S LPAL A F+LVFARVGAMVMLLP GESNIP R+KLSIAL LTLIILPLHRNA Sbjct: 1 MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNA 60 Query: 61 YHVDLTSISSLGVLMVHELIIGIVLGATARVTLSALNVAGSVIAQQLGLGFVTAVDPTQG 120 Y VD++S++ L VLM+ E+IIGIVLGATARVTLSAL VAGSVIAQQLGLGFVTAVDPTQG Sbjct: 61 YQVDMSSLTPLLVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQG 120 Query: 121 QQGQIIGNFLTILGLTLLFATDSHYLVIAALSESYRIFSPGEIMPTGDVAALATSAFSAA 180 QQG +IGNFLTILG+T+LFATDSH+LVI ALS+SY+IF+PGE++ +GDVAALAT AF+A+ Sbjct: 121 QQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAAS 180 Query: 181 FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIMVGFLIFGVVLAAMMNT 240 FKIG+QL+APFLVFGLVFNIGLG+LARLMPQMQVYFVGVPLSIM+GF+IF VL MM T Sbjct: 181 FKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT 240 Query: 241 YLDYFLGVMRQLAP 254 +L YF GVM++L P Sbjct: 241 FLAYFGGVMQELTP 254