BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0056.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57579.1| hypothetical protein [Bradyrhizobium elkanii]         355   1e-96
ref|NP_768430.1| hypothetical protein bll1790 [Bradyrhizobium ja...   263   5e-69
ref|YP_534221.1| hypothetical protein RPC_4379 [Rhodopseudomonas...   184   5e-45
ref|YP_578431.1| hypothetical protein Nham_3236 [Nitrobacter ham...   179   9e-44
ref|NP_769131.1| hypothetical protein bll2491 [Bradyrhizobium ja...   179   1e-43

>emb|CAQ57579.1| hypothetical protein [Bradyrhizobium elkanii]
          Length = 251

 Score =  355 bits (911), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 60
           VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL
Sbjct: 83  VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 142

Query: 61  VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 120
           VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW
Sbjct: 143 VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 202

Query: 121 IRRNYTMLRDLESSVMQRGSYRSRATNIESLRGTRATVGPVHYPFRYQR 169
           IRRNYTMLRDLESSVMQRGSYRSRATNIESLRGTRATVGPVHYPFRYQR
Sbjct: 203 IRRNYTMLRDLESSVMQRGSYRSRATNIESLRGTRATVGPVHYPFRYQR 251


>ref|NP_768430.1| hypothetical protein bll1790 [Bradyrhizobium japonicum USDA 110]
 gb|AAG60774.1|AF322012_79 ID170 [Bradyrhizobium japonicum]
 dbj|BAC47055.1| bll1790 [Bradyrhizobium japonicum USDA 110]
          Length = 239

 Score =  263 bits (673), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 139/157 (88%)

Query: 1   VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 60
           VIDLGFHAFDEFFKMCEEIGF+KETARCCV PV+LFVAGADR SFRGY+MLRR+IPPA+L
Sbjct: 83  VIDLGFHAFDEFFKMCEEIGFVKETARCCVTPVVLFVAGADRISFRGYEMLRRRIPPASL 142

Query: 61  VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 120
           V +HNEF LR GLP+AMD +RV+RISALPLFLKRYIDRL FSFTGYLR+EKDW+TELHQW
Sbjct: 143 VIIHNEFALRGGLPEAMDGDRVIRISALPLFLKRYIDRLGFSFTGYLRNEKDWSTELHQW 202

Query: 121 IRRNYTMLRDLESSVMQRGSYRSRATNIESLRGTRAT 157
           IRRNY M RDL+SSV  R   R R T+I SLR TRAT
Sbjct: 203 IRRNYGMFRDLDSSVTLRRWDRPRGTDIGSLRCTRAT 239


>ref|YP_534221.1| hypothetical protein RPC_4379 [Rhodopseudomonas palustris BisB18]
 gb|ABD89902.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 219

 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 101/132 (76%)

Query: 1   VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 60
           V+DLGFHAFDEFFKM EEIG++KE AR  VAP ILFVA  DR S RGY ML+ QIPP AL
Sbjct: 83  VVDLGFHAFDEFFKMSEEIGYLKEAARRQVAPQILFVADTDRGSLRGYDMLQAQIPPRAL 142

Query: 61  VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 120
           VTV N++ LR  +P      RVL I ALP FLK YIDRL+FSFTGYLR EKD +TELHQW
Sbjct: 143 VTVANDYALRGEMPAVFARGRVLPIDALPTFLKTYIDRLNFSFTGYLRTEKDSSTELHQW 202

Query: 121 IRRNYTMLRDLE 132
           IR+NY   RDLE
Sbjct: 203 IRKNYFSFRDLE 214


>ref|YP_578431.1| hypothetical protein Nham_3236 [Nitrobacter hamburgensis X14]
 gb|ABE63971.1| hypothetical protein Nham_3236 [Nitrobacter hamburgensis X14]
          Length = 225

 Score =  179 bits (455), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 103/138 (74%)

Query: 1   VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 60
           VIDLG+HAFDEFF M EEIGF+KE AR  VAPV+LF+A +DR S RGYQ LR  +PP A+
Sbjct: 86  VIDLGYHAFDEFFGMIEEIGFVKEAARRGVAPVVLFIADSDRVSARGYQTLRATLPPGAV 145

Query: 61  VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 120
           V V NEFVLR  LP+     RV+ I+ALP FLK YIDRL+FSFT YLR EKD +TELHQW
Sbjct: 146 VIVDNEFVLRGELPETFIHSRVMHIAALPAFLKSYIDRLTFSFTDYLRTEKDTSTELHQW 205

Query: 121 IRRNYTMLRDLESSVMQR 138
            R NY   R++E  + Q+
Sbjct: 206 TRNNYFSFREIELQLAQQ 223


>ref|NP_769131.1| hypothetical protein bll2491 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47756.1| bll2491 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 105/140 (75%), Gaps = 1/140 (0%)

Query: 1   VIDLGFHAFDEFFKMCEEIGFIKETARCCVAPVILFVAGADRHSFRGYQMLRRQIPPAAL 60
           VIDLGFHAFDEFFKM +EIG +KE AR  VAP ILFVA  DR S R ++MLR QIP   L
Sbjct: 84  VIDLGFHAFDEFFKMADEIGLLKEAARRHVAPQILFVADTDRVSARAHEMLREQIPRMNL 143

Query: 61  VTVHNEFVLREGLPDAMDCERVLRISALPLFLKRYIDRLSFSFTGYLRDEKDWTTELHQW 120
           +TV NE+V+R  LP AM   R+ R+ ALP FLK YIDRL+FSFTGYLR EKD +TELHQW
Sbjct: 144 ITVDNEYVVRGELPAAMAGGRLFRLPALPGFLKTYIDRLNFSFTGYLRQEKDASTELHQW 203

Query: 121 IRRNYTMLRDLE-SSVMQRG 139
            RRNY   R+LE S ++QR 
Sbjct: 204 TRRNYLAFRELELSLILQRS 223