BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0055.p (610 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] 1212 0.0 ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii N... 597 e-168 emb|CCC55885.1| putative NopM [Sinorhizobium fredii] 537 e-150 ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium ja... 531 e-148 gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] 531 e-148 >emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] Length = 610 Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 610/610 (100%), Positives = 610/610 (100%) Query: 1 MNTEQLGSGTPSGTSDSETSEPASPAATQWGEALTDALASAGEASSSQLEVLSTWAAEGG 60 MNTEQLGSGTPSGTSDSETSEPASPAATQWGEALTDALASAGEASSSQLEVLSTWAAEGG Sbjct: 1 MNTEQLGSGTPSGTSDSETSEPASPAATQWGEALTDALASAGEASSSQLEVLSTWAAEGG 60 Query: 61 QGQHEDRREAVSRTRAWQDRGDVNEALDLSSLSLTGLPASTLAGLRRLNVDDNQLNSLPG 120 QGQHEDRREAVSRTRAWQDRGDVNEALDLSSLSLTGLPASTLAGLRRLNVDDNQLNSLPG Sbjct: 61 QGQHEDRREAVSRTRAWQDRGDVNEALDLSSLSLTGLPASTLAGLRRLNVDDNQLNSLPG 120 Query: 121 NLPVSLQWLSASNNRLTGLPELPNGLLQLDVISNGLTNLPAQLPPGLLRLRVDNNQLTSL 180 NLPVSLQWLSASNNRLTGLPELPNGLLQLDVISNGLTNLPAQLPPGLLRLRVDNNQLTSL Sbjct: 121 NLPVSLQWLSASNNRLTGLPELPNGLLQLDVISNGLTNLPAQLPPGLLRLRVDNNQLTSL 180 Query: 181 PDRLPATLEELDASGNRLTNLPDLPSRLQRLNVDHNQLTDLPEPLPGGLQWLSASHNELT 240 PDRLPATLEELDASGNRLTNLPDLPSRLQRLNVDHNQLTDLPEPLPGGLQWLSASHNELT Sbjct: 181 PDRLPATLEELDASGNRLTNLPDLPSRLQRLNVDHNQLTDLPEPLPGGLQWLSASHNELT 240 Query: 241 SLPETALPDLIWLGASNNQLTSVPETLLTQLSGYSSVNLENNPLPDLVQAGLTATIHAAG 300 SLPETALPDLIWLGASNNQLTSVPETLLTQLSGYSSVNLENNPLPDLVQAGLTATIHAAG Sbjct: 241 SLPETALPDLIWLGASNNQLTSVPETLLTQLSGYSSVNLENNPLPDLVQAGLTATIHAAG 300 Query: 301 YAGPQVFLSTAEGALEVQPRSLQEVVAHWLEAEPSVMATWQRFAQEPGAQDYARFLDRLG 360 YAGPQVFLSTAEGALEVQPRSLQEVVAHWLEAEPSVMATWQRFAQEPGAQDYARFLDRLG Sbjct: 301 YAGPQVFLSTAEGALEVQPRSLQEVVAHWLEAEPSVMATWQRFAQEPGAQDYARFLDRLG 360 Query: 361 GTVNYGNEAFRQAVVEDLRQAAVRPRLREQFFQLASGASERCEDRVTLTWNGMQSARLNA 420 GTVNYGNEAFRQAVVEDLRQAAVRPRLREQFFQLASGASERCEDRVTLTWNGMQSARLNA Sbjct: 361 GTVNYGNEAFRQAVVEDLRQAAVRPRLREQFFQLASGASERCEDRVTLTWNGMQSARLNA 420 Query: 421 DVEDGVYDGRLTELLQQGRVLFRLEALDRIARETVNSLRRADPDADVDEIEVYLAYQTQL 480 DVEDGVYDGRLTELLQQGRVLFRLEALDRIARETVNSLRRADPDADVDEIEVYLAYQTQL Sbjct: 421 DVEDGVYDGRLTELLQQGRVLFRLEALDRIARETVNSLRRADPDADVDEIEVYLAYQTQL 480 Query: 481 RNPLQLLHIAPDMRFLNVSNVTEDDIVRAEASVRNQEAAEFPDYLATRWHPWESVLRRIA 540 RNPLQLLHIAPDMRFLNVSNVTEDDIVRAEASVRNQEAAEFPDYLATRWHPWESVLRRIA Sbjct: 481 RNPLQLLHIAPDMRFLNVSNVTEDDIVRAEASVRNQEAAEFPDYLATRWHPWESVLRRIA 540 Query: 541 PEDHVAMERRLVDAMGDEFQARLDRRLAENGLTGDADAERVLGAQIRKEIALEIKGPVMH 600 PEDHVAMERRLVDAMGDEFQARLDRRLAENGLTGDADAERVLGAQIRKEIALEIKGPVMH Sbjct: 541 PEDHVAMERRLVDAMGDEFQARLDRRLAENGLTGDADAERVLGAQIRKEIALEIKGPVMH 600 Query: 601 QVLERFGLEL 610 QVLERFGLEL Sbjct: 601 QVLERFGLEL 610 >ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii NGR234] sp|P55456.1|Y4FR_RHISN RecName: Full=Probable E3 ubiquitin-protein ligase NGR_a03640 gb|AAB91674.1| nodulation outer protein NopM; probable type III effector [Sinorhizobium fredii NGR234] Length = 546 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 305/462 (66%), Positives = 361/462 (78%), Gaps = 2/462 (0%) Query: 149 LDVISNGLTNLPAQLPPGLLRLRVDNNQLTSLPDRLPATLEELDASGNRLTNLPDLPSRL 208 LD+ LT L L GL RL V+NNQL LPD LP TL EL+AS NRLT LPDLP+ L Sbjct: 87 LDLSFLSLTPLSIPLVSGLRRLNVNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGL 146 Query: 209 QRLNVDHNQLTDLPEPLPGGLQWLSASHNELTSLPETALPDLIWLGASNNQLTSVPETLL 268 QRLNV++N+LT+LPEPLP L+WL A +N+LT LPE P+LIWLGA NNQLTSVPE+LL Sbjct: 147 QRLNVENNRLTNLPEPLPAALEWLGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPESLL 206 Query: 269 TQLSGYSSVNLENNPLPDLVQAGLTATIHAAGYAGPQVFLSTAEGALEVQPRSLQEVVAH 328 TQL +SS++LENNPLP VQ L +HAAGYAGPQ+FL G +E+ R L EVVA Sbjct: 207 TQLGQWSSIDLENNPLPHGVQTNLVTAMHAAGYAGPQIFLPM--GPVELARRPLHEVVAD 264 Query: 329 WLEAEPSVMATWQRFAQEPGAQDYARFLDRLGGTVNYGNEAFRQAVVEDLRQAAVRPRLR 388 WLE + +A W+ FA E GA+DYA FLDRL TVNYGN+AFRQAV LRQA RP+LR Sbjct: 265 WLEGDLETVAAWRGFANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVARPQLR 324 Query: 389 EQFFQLASGASERCEDRVTLTWNGMQSARLNADVEDGVYDGRLTELLQQGRVLFRLEALD 448 Q+F+ ASGAS+ CEDR+TLTWNGMQ+A L ADVEDGVYDG L +LLQ GRV+FRLEALD Sbjct: 325 AQYFEQASGASDSCEDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALD 384 Query: 449 RIARETVNSLRRADPDADVDEIEVYLAYQTQLRNPLQLLHIAPDMRFLNVSNVTEDDIVR 508 IARETVNSLRR DPDAD+DEIEVYLAYQTQLR+ L+L H+APDMRFLNVS+VTE+D+ R Sbjct: 385 GIARETVNSLRRTDPDADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVAR 444 Query: 509 AEASVRNQEAAEFPDYLATRWHPWESVLRRIAPEDHVAMERRLVDAMGDEFQARLDRRLA 568 A +SVR EA F +Y+ATRW PWE V+RRIAP H AM+ +L++AMG+EF++RLD +LA Sbjct: 445 AASSVRELEARGFGEYVATRWQPWERVMRRIAPASHAAMQEQLIEAMGEEFRSRLDEKLA 504 Query: 569 ENGLTGDADAERVLGAQIRKEIALEIKGPVMHQVLERFGLEL 610 E+GLTGDADAERV GA+I +IA IKG M +VL GLEL Sbjct: 505 EHGLTGDADAERVFGAEILNDIARRIKGETMEKVLRGRGLEL 546 >emb|CCC55885.1| putative NopM [Sinorhizobium fredii] Length = 581 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 319/609 (52%), Positives = 400/609 (65%), Gaps = 48/609 (7%) Query: 16 DSETSEPASPAATQWGEA-------------LTDALASAGEASSSQLEVLSTWAAEGGQG 62 D++ S +SPA ++ GE L +A+ +S++ ++L W AE GQG Sbjct: 5 DAQQSAGSSPATSEEGEQESYLSGFARAVADLVEAMTGYRTPASARAQILDNWVAEEGQG 64 Query: 63 QHEDRREAVSRTRAWQDRGDVNEALDLSSLSLTGLPASTLAGLRRLNVDDNQLNSLPGNL 122 + E+RR+ +R R + G + L SSLSLT LPA+ L L N+L+SLP + Sbjct: 65 EAENRRQGRTRIRGSDNTGSHSLDL--SSLSLTALPAALPPRLLELRARHNELSSLPASF 122 Query: 123 PVSLQWLSASNNRLTGLPE-LPNGLLQLDVISNGLTNLPAQLPPGLLRLRVDNNQLTSLP 181 P LQ L S+NRLT LP+ LP L +L+V N LT+LPA LP GL L +N+LTSLP Sbjct: 123 PPGLQHLLISHNRLTSLPDALPATLSRLEVADNSLTSLPANLPAGLEILNASDNRLTSLP 182 Query: 182 DRLPATLEELDASGNRLTNLPD-LPSRLQRLNVDHNQLTDLPEPLPGGLQWLSASHNELT 240 D LP+ L L SGN+LT+LPD LPS L L+V NQL +LP+PLP LQ L+ S N LT Sbjct: 183 DALPSRLTSLAVSGNQLTDLPDSLPSGLIELDVSSNQLANLPDPLPSTLQSLNLSGNRLT 242 Query: 241 SLPETALPDLIWLGASNNQLTSVPETLLTQLSGYSSVNLENNPLPDLVQAGLTATIHAAG 300 LPE L G N S P ++ +NPLPD V A L A Sbjct: 243 GLPEDLLE-----GRVPNLSLSYPH--------LENLEFGDNPLPDDVLANLAA------ 283 Query: 301 YAGPQVFLSTAEGALEVQPRSLQEVVAHWLEAEPSVMATWQRFAQEPGAQDYARFLDRLG 360 AE ++ +SL E AHWL +P+ +A WQ FA EPGAQDYA+FL+RL Sbjct: 284 ----------AEAPPQLAQQSLYEAAAHWLADDPATLAEWQHFADEPGAQDYAQFLERLR 333 Query: 361 GTVNYGNEAFRQAVVEDLRQAAVRPRLREQFFQLASGASERCEDRVTLTWNGMQSARLNA 420 GTVNYGN+ FRQ V +DLRQ A PRLREQFF AS A+ CEDRVTL WNGMQ+ARLNA Sbjct: 334 GTVNYGNDEFRQRVADDLRQTAANPRLREQFFAQASDANASCEDRVTLHWNGMQTARLNA 393 Query: 421 DVEDGVYDGRLTELLQQGRVLFRLEALDRIARETVNSLRRADPDADVDEIEVYLAYQTQL 480 DVE GVYD RL EL+Q+GRV FRLEALD IAR+ VNSL DP ++D++EVYLAYQ +L Sbjct: 394 DVEGGVYDDRLGELIQRGRVAFRLEALDEIARDRVNSLLSLDP--NIDDVEVYLAYQHRL 451 Query: 481 RNPLQLLHIAPDMRFLNVSNVTEDDIVRAEASVRNQEAAEFPDYLATRWHPWESVLRRIA 540 R PL+L H+APDMRFL VS+V+EDD A +R +EA +F DY+ATRW PWE+VLRRIA Sbjct: 452 REPLELSHVAPDMRFLAVSHVSEDDATEALDLIREREANQFTDYMATRWQPWETVLRRIA 511 Query: 541 PEDHVAMERRLVDAMGDEFQARLDRRLAENGLTGDADAERVLGAQIRKEIALEIKGPVMH 600 P++H AM+ RLV+AMG+EFQ+RLD+RLAE+GL GD DAERVLGAQ+R +IA EIKG VM+ Sbjct: 512 PDEHAAMQDRLVEAMGEEFQSRLDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEVMN 571 Query: 601 QVLERFGLE 609 ++L GLE Sbjct: 572 RLLSERGLE 580 >ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium japonicum USDA 110] dbj|BAC47169.1| blr1904 [Bradyrhizobium japonicum USDA 110] Length = 585 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 312/578 (53%), Positives = 390/578 (67%), Gaps = 35/578 (6%) Query: 34 LTDALASAGEASSSQLEVLSTWAAEGGQGQHEDRREAVSRTRAWQDRGDVNEALDLSSLS 93 L +A+ +S++ ++L WAAE GQG+ E+RR+ +R R + G + L SSLS Sbjct: 40 LLEAMTGYRTPASARAQLLDNWAAEEGQGEAENRRQGRARIRGADNTGSHSLDL--SSLS 97 Query: 94 LTGLPASTLAGLRRLNVDDNQLNSLPGNLPVSLQWLSASNNRLTGLPE-LPNGLLQLDVI 152 LT LPA+ L L N+L+SLP + P LQ L S+NRL LP+ LP L +L+V Sbjct: 98 LTALPAALPPRLLELRARHNELSSLPASFPPGLQHLLISHNRLISLPDALPATLSRLEVA 157 Query: 153 SNGLTNLPAQLPPGLLRLRVDNNQLTSLPDRLPATLEELDASGNRLTNLPD-LPSRLQRL 211 N LT+LPA LP GL L +N+LTSLPD LP+ L L SGN+LT+LPD LPS L L Sbjct: 158 DNSLTSLPANLPAGLEILNASDNRLTSLPDALPSRLTSLAVSGNQLTDLPDYLPSGLIEL 217 Query: 212 NVDHNQLTDLPEPLPGGLQWLSASHNELTSLPETALPDLIWLGASNNQLTSVPETLLTQL 271 +V NQL DLP PLP LQ L+ S N LTSLPE L G N S P Sbjct: 218 DVSSNQLADLPAPLPSTLQSLNLSGNRLTSLPEDLLE-----GRVPNLSLSYPH------ 266 Query: 272 SGYSSVNLENNPLPDLVQAGLTATIHAAGYAGPQVFLSTAEGALEVQPRSLQEVVAHWLE 331 ++ +NPLPD V A L +TAE ++ +SL E A WL Sbjct: 267 --LENLEFGDNPLPDDVLANL----------------ATAEAPPQLAQQSLYEAAAQWLA 308 Query: 332 AEPSVMATWQRFAQEPGAQDYARFLDRLGGTVNYGNEAFRQAVVEDLRQAAVRPRLREQF 391 +P+ +A WQ FA EPGAQDYA+FL+RL TVNYGN+ FRQAV +DL+QAA P LREQF Sbjct: 309 DDPATLAKWQHFADEPGAQDYAQFLERLRETVNYGNDEFRQAVADDLQQAAANPTLREQF 368 Query: 392 FQLASGASERCEDRVTLTWNGMQSARLNADVEDGVYDGRLTELLQQGRVLFRLEALDRIA 451 F AS A+ CEDRVTL WNGMQ+ARLNADVEDGVYD RL +L+Q+GRV FRLEALD IA Sbjct: 369 FAQASEANASCEDRVTLHWNGMQTARLNADVEDGVYDDRLGDLIQRGRVAFRLEALDEIA 428 Query: 452 RETVNSLRRADPDADVDEIEVYLAYQTQLRNPLQLLHIAPDMRFLNVSNVTEDDIVRAEA 511 R+ +NSL +P +VD+IEVYLAYQ +LR PL+L H+APDMRFL VS+V+EDD A Sbjct: 429 RDRINSLASGNP--NVDDIEVYLAYQHRLREPLELSHVAPDMRFLAVSHVSEDDATEALD 486 Query: 512 SVRNQEAAEFPDYLATRWHPWESVLRRIAPEDHVAMERRLVDAMGDEFQARLDRRLAENG 571 VR +EA++F D++A+RW PWE+VLRRIAP++H AM+ RLV+AMG+EFQ+RLD+RLAE+G Sbjct: 487 LVREREASQFTDFMASRWQPWETVLRRIAPDEHAAMQDRLVEAMGEEFQSRLDQRLAEHG 546 Query: 572 LTGDADAERVLGAQIRKEIALEIKGPVMHQVLERFGLE 609 L GD DAERVLGAQ+R +IA EIKG VMH++L GLE Sbjct: 547 LVGDVDAERVLGAQVRNQIAGEIKGEVMHRLLAERGLE 584 >gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] Length = 581 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 312/578 (53%), Positives = 390/578 (67%), Gaps = 35/578 (6%) Query: 34 LTDALASAGEASSSQLEVLSTWAAEGGQGQHEDRREAVSRTRAWQDRGDVNEALDLSSLS 93 L +A+ +S++ ++L WAAE GQG+ E+RR+ +R R + G + L SSLS Sbjct: 36 LLEAMTGYRTPASARAQLLDNWAAEEGQGEAENRRQGRARIRGADNTGSHSLDL--SSLS 93 Query: 94 LTGLPASTLAGLRRLNVDDNQLNSLPGNLPVSLQWLSASNNRLTGLPE-LPNGLLQLDVI 152 LT LPA+ L L N+L+SLP + P LQ L S+NRL LP+ LP L +L+V Sbjct: 94 LTALPAALPPRLLELRARHNELSSLPASFPPGLQHLLISHNRLISLPDALPATLSRLEVA 153 Query: 153 SNGLTNLPAQLPPGLLRLRVDNNQLTSLPDRLPATLEELDASGNRLTNLPD-LPSRLQRL 211 N LT+LPA LP GL L +N+LTSLPD LP+ L L SGN+LT+LPD LPS L L Sbjct: 154 DNSLTSLPANLPAGLEILNASDNRLTSLPDALPSRLTSLAVSGNQLTDLPDYLPSGLIEL 213 Query: 212 NVDHNQLTDLPEPLPGGLQWLSASHNELTSLPETALPDLIWLGASNNQLTSVPETLLTQL 271 +V NQL DLP PLP LQ L+ S N LTSLPE L G N S P Sbjct: 214 DVSSNQLADLPAPLPSTLQSLNLSGNRLTSLPEDLLE-----GRVPNLSLSYPH------ 262 Query: 272 SGYSSVNLENNPLPDLVQAGLTATIHAAGYAGPQVFLSTAEGALEVQPRSLQEVVAHWLE 331 ++ +NPLPD V A L +TAE ++ +SL E A WL Sbjct: 263 --LENLEFGDNPLPDDVLANL----------------ATAEAPPQLAQQSLYEAAAQWLA 304 Query: 332 AEPSVMATWQRFAQEPGAQDYARFLDRLGGTVNYGNEAFRQAVVEDLRQAAVRPRLREQF 391 +P+ +A WQ FA EPGAQDYA+FL+RL TVNYGN+ FRQAV +DL+QAA P LREQF Sbjct: 305 DDPATLAKWQHFADEPGAQDYAQFLERLRETVNYGNDEFRQAVADDLQQAAANPTLREQF 364 Query: 392 FQLASGASERCEDRVTLTWNGMQSARLNADVEDGVYDGRLTELLQQGRVLFRLEALDRIA 451 F AS A+ CEDRVTL WNGMQ+ARLNADVEDGVYD RL +L+Q+GRV FRLEALD IA Sbjct: 365 FAQASEANASCEDRVTLHWNGMQTARLNADVEDGVYDDRLGDLIQRGRVAFRLEALDEIA 424 Query: 452 RETVNSLRRADPDADVDEIEVYLAYQTQLRNPLQLLHIAPDMRFLNVSNVTEDDIVRAEA 511 R+ +NSL +P +VD+IEVYLAYQ +LR PL+L H+APDMRFL VS+V+EDD A Sbjct: 425 RDRINSLASGNP--NVDDIEVYLAYQHRLREPLELSHVAPDMRFLAVSHVSEDDATEALD 482 Query: 512 SVRNQEAAEFPDYLATRWHPWESVLRRIAPEDHVAMERRLVDAMGDEFQARLDRRLAENG 571 VR +EA++F D++A+RW PWE+VLRRIAP++H AM+ RLV+AMG+EFQ+RLD+RLAE+G Sbjct: 483 LVREREASQFTDFMASRWQPWETVLRRIAPDEHAAMQDRLVEAMGEEFQSRLDQRLAEHG 542 Query: 572 LTGDADAERVLGAQIRKEIALEIKGPVMHQVLERFGLE 609 L GD DAERVLGAQ+R +IA EIKG VMH++L GLE Sbjct: 543 LVGDVDAERVLGAQVRNQIAGEIKGEVMHRLLAERGLE 580